Rmu_sc0011805.1_g000001

Plant mobile domain

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_multiflora
Rmu_sc0011805.1
OG0000253
Physical Location & Seq
Forward (+)
341 .. 1543
1203 bp
Loading structure...
UTR
Exon/CDS
Intron
Rmu_sc0011805.1_g000001.1.cds

Sequence Viewer

Length: 1203 bp
atggcaaaaggagttaaagtttccattgcaccaacaactttaggatatatttatcaccgtcttggagaaattgcttctcatccggtaggggatgttccccccaaagtgtgcttacccatacattatgtacttggctggcttggggaatattttccacagttgtgtaaacgacgagcggacagtgagtttccagcagattatccgcgtctagcgaggtatgcttatgttgcaagtaaagatttgtcaattacttgtgccagaatggtctttcgggataacaagtctgtaatctatcgtccccatgcttttctcgaaactgagggctgttttttgttagacgatgagactctgtcagatgagagatttgagtttctttttggcatacgctctgcatgccttcctgtgagagttgatggtcagctcattttagagccgtattatcctaacagatttgcacgtcaattcggctatgatcagagtgttccctctaaccgcctctcttttagtgtgtcgaagaggaagcagtgttttgttgaagatttagcgagagcccaatttattctttacaggaggaatacaacagctcagttttatatcccgagatcgacacgtgaaggagaatgcacttggtggtactgcaagtggtggttgaaagcttgtataccatatttggggctttctgtatcgaagactttcaagactttcactcagaaatctcctgagcccgatcatcgtgtctttatagtgaacaaacttgctgaagtttctgcggatttgagaaaagaagttcagatttcatctttacagaggccagagagtcagattcttcaaacgagccctagcaaggttgggccagatggcgataaccttatcagcagtgagcatattaaccatgataagatggcgacccttaaagggacagtatccagagaggtgagtcttcctaagacaggatctggcactcaaaaggcactcaagaggaaacctgacagtttacatccttctaatccttcagcagctattcaaaatgtccaacaaacagaaagtggatttagctctaatactgatccttctagagcggaaattgtagctcgaacttctaaaaggcaacctgtagagcgtcagagcaatgggcgtcctcaaagggctcaaactactattgatcaaggtgtgaagaaaacagttgtgcctcagaaagcctga
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
PMD

Protein Analysis

400

Amino Acids

45.3

Weight (kDa)

9.46

Isoelectric Point (pI)

55.22

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0000253)

Species Orthologous Gene IDs
fragaria_vesca FvH4_1g28912 FvH4_3g31370 FvH4_3g31371 FvH4_4g10340 FvH4_4g10340 FvH4_4g10340 FvH4_4g10340 FvH4_4g10340 FvH4_4g10340 FvH4_4g10340 FvH4_6g28991 FvH4_7g16740 FvH4_7g18610 FvH4_7g18610 FvH4_7g18610 FvH4_7g18610 FvH4_7g18610
malus_domestica MD10G1126100.v1.1 MD10G1312700.v1.1
rosa_chinensis RchiOBHm_Chr6g0276621
rosa_laevigata RLG00000023327 RLG00000023328
rosa_multiflora Rmu_co8195922.1_g000001 Rmu_co8303105.1_g000001 Rmu_co8385689.1_g000001 Rmu_sc0000385.1_g000010 Rmu_sc0000594.1_g000002 Rmu_sc0000857.1_g000010 Rmu_sc0001016.1_g000053 Rmu_sc0001468.1_g000028 Rmu_sc0001548.1_g000047 Rmu_sc0001548.1_g000048 Rmu_sc0002281.1_g000026 Rmu_sc0002281.1_g000027 Rmu_sc0002281.1_g000028 Rmu_sc0002478.1_g000001 Rmu_sc0002513.1_g000014 Rmu_sc0002662.1_g000017 Rmu_sc0003936.1_g000040 Rmu_sc0004084.1_g000047 Rmu_sc0005529.1_g000005 Rmu_sc0005529.1_g000006 Rmu_sc0005728.1_g000010 Rmu_sc0005747.1_g000017 Rmu_sc0005747.1_g000018 Rmu_sc0006385.1_g000001 Rmu_sc0006550.1_g000019 Rmu_sc0006803.1_g000033 Rmu_sc0007102.1_g000011 Rmu_sc0011018.1_g000001 Rmu_sc0011452.1_g000014 Rmu_sc0011805.1_g000001 Rmu_sc0011805.1_g000002 Rmu_sc0012566.1_g000001 Rmu_sc0013807.1_g000007 Rmu_sc0015817.1_g000001 Rmu_sc0015930.1_g000011 Rmu_sc0018873.1_g000003 Rmu_sc0020929.1_g000001
rosa_roxburghii Rroxscaffold_2G00081310 Rroxscaffold_2G00111790 Rroxscaffold_5G00349530 Rroxscaffold_5G00356270 Rroxscaffold_5G00356280 Rroxscaffold_5G00356290
rosa_rugosa Rorug01G0056400 Rorug01G0056500 Rorug02G0247000 Rorug03G0271700 Rorug04G0157900 Rorug05G0221700 Rorug05G0251400 Rorug05G0251400 Rorug06G0087300 Rorug07G0221900 Rorug07G0221900
rosa_samantha Rh1AG073200 Rh1AG073300 Rh1AG124600 Rh1AG124700 Rh1BG091900 Rh1CG031600 Rh1CG072100 Rh1CG072200 Rh1CG118800 Rh1CG276600 Rh1CG276700 Rh1DG077300 Rh2BG192000 Rh2BG330900 Rh2BG331000 Rh2BG517700 Rh2BG517800 Rh2CG188300 Rh2DG120800 Rh2DG323900 Rh2DG420700 Rh2DG433000 Rh2DG529400 Rh2DG529500 Rh3DG358100 Rh3DG358200 Rh4BG129700 Rh4BG129800 Rh4BG129900 Rh4BG166400 Rh4CG032000 Rh4DG024800 Rh4DG039500 Rh5AG223400 Rh5BG244500 Rh5BG244600 Rh5BG244700 Rh5CG363000 Rh5CG366900 Rh6AG117500 Rh6AG188600 Rh6AG188700 Rh6AG188800 Rh6BG111400 Rh6BG140800 Rh6BG178800 Rh6DG124100 Rh6DG210000 Rh7AG441200 Rh7BG296800 Rh7BG413900 Rh7BG414000 Rh7BG452400 Rh7DG234000 Rh7DG234100
rosa_wichuraiana Rw2G019410 Rw5G042140 Rw7G019590

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccBSI CCGCTC 2 cut(s) 176, 1079
AccI GTMKAC 1 cut(s) 661
AccII CGCG 1 cut(s) 205
AciI CCGC 5 cut(s) 176, 203, 493, 770, 1079
AclWI GGATC 2 cut(s) 961, 1061
AcuI CTGAAG 2 cut(s) 780, 996
AcvI CACGTG 1 cut(s) 611
AcyI GRCGYC 1 cut(s) 1135
AdeI CACNNNGTG 1 cut(s) 630
AfaI GTAC 2 cut(s) 129, 635
AfiI CCNNNNNNNGG 4 cut(s) 671, 844, 915, 950
AflIII ACRYGT 1 cut(s) 608
AgsI TTSAA 5 cut(s) 536, 652, 697, 830, 1025
AjiI CACGTC 1 cut(s) 458
AleI CACNNNNGTG 1 cut(s) 160
AluBI AGCT 6 cut(s) 421, 584, 656, 1019, 1056, 1091
AluI AGCT 6 cut(s) 421, 584, 656, 1019, 1056, 1091
Alw26I GTCTC 1 cut(s) 338
AlwI GGATC 2 cut(s) 961, 1061
AlwNI CAGNNNCTG 1 cut(s) 956
Ama87I CYCGRG 1 cut(s) 598
AoxI GGCC 2 cut(s) 809, 851
ApeKI GCWGC 1 cut(s) 1016
Asp700I GAANNNNTTC 2 cut(s) 150, 692
AspS9I GGNCC 1 cut(s) 851
AsuHPI GGTGA 2 cut(s) 47, 946
AvaI CYCGRG 1 cut(s) 598
BanII GRGCYC 4 cut(s) 553, 726, 839, 1150
BbrPI CACGTG 1 cut(s) 611
BbsI GAAGAC 2 cut(s) 695, 932
BbvI GCAGC 1 cut(s) 1028
BccI CCATC 3 cut(s) 407, 851, 895
BceAI ACGGC 1 cut(s) 418
BciVI GTATCC 1 cut(s) 934
BclI TGATCA 2 cut(s) 472, 1162
BcoDI GTCTC 1 cut(s) 338
BfaI CTAG 3 cut(s) 209, 840, 1074
BfmI CTRYAG 1 cut(s) 1113
BfuI GTATCC 1 cut(s) 934
BisI GCNGC 1 cut(s) 1017
BlsI GCNGC 1 cut(s) 1018
BmeT110I CYCGRG 1 cut(s) 598
BmgBI CACGTC 1 cut(s) 458
BmgT120I GGNCC 1 cut(s) 851
BpiI GAAGAC 2 cut(s) 695, 932
Bpu10I CCTNAGC 1 cut(s) 720
BpuEI CTTGAG 1 cut(s) 959
BsaAI YACGTR 1 cut(s) 611
BsaHI GRCGYC 1 cut(s) 1135
BsaWI WCCGGW 1 cut(s) 82
BsaXI ACNNNNNCTCC 1 cut(s) 33
Bsc4I CCNNNNNNNGG 4 cut(s) 671, 844, 915, 950
Bse3DI GCAATG 2 cut(s) 24, 1135
BseGI GGATG 3 cut(s) 79, 97, 997
BseLI CCNNNNNNNGG 4 cut(s) 671, 844, 915, 950
BseMI GCAATG 2 cut(s) 24, 1135
BseMII CTCAG 4 cut(s) 309, 599, 711, 722
BseXI GCAGC 1 cut(s) 1028
Bsh1236I CGCG 1 cut(s) 205
BshFI GGCC 2 cut(s) 811, 853
BsiHKCI CYCGRG 1 cut(s) 598
BsiSI CCGG 1 cut(s) 83
BslFI GGGAC 2 cut(s) 282, 931
BslI CCNNNNNNNGG 4 cut(s) 671, 844, 915, 950
BsmAI GTCTC 1 cut(s) 338
BsmFI GGGAC 2 cut(s) 282, 931
BsmI GAATGC 1 cut(s) 626
BsnI GGCC 2 cut(s) 811, 853
BsoBI CYCGRG 1 cut(s) 598
Bsp1286I GDGCHC 4 cut(s) 553, 726, 839, 1150
Bsp143I GATC 6 cut(s) 472, 602, 727, 953, 1066, 1162
BspACI CCGC 5 cut(s) 176, 203, 493, 770, 1079
BspANI GGCC 2 cut(s) 811, 853
BspCNI CTCAG 4 cut(s) 310, 598, 712, 721
BspFNI CGCG 1 cut(s) 205
BspPI GGATC 2 cut(s) 961, 1061
BsrBI CCGCTC 2 cut(s) 176, 1079
BsrDI GCAATG 2 cut(s) 24, 1135
BssMI GATC 6 cut(s) 472, 602, 727, 953, 1066, 1162
BssNAI GTATAC 1 cut(s) 662
BssNI GRCGYC 1 cut(s) 1135
Bst1107I GTATAC 1 cut(s) 662
Bst4CI ACNGT 6 cut(s) 59, 159, 182, 922, 992, 1183
Bst6I CTCTTC 1 cut(s) 509
BstACI GRCGYC 1 cut(s) 1135
BstBAI YACGTR 1 cut(s) 611
BstC8I GCNNGC 2 cut(s) 137, 394
BstDEI CTNAG 6 cut(s) 318, 585, 708, 720, 945, 1191
BstENI CCTNNNNNAGG 1 cut(s) 948
BstF5I GGATG 3 cut(s) 79, 97, 997
BstFNI CGCG 1 cut(s) 205
BstKTI GATC 6 cut(s) 475, 605, 730, 956, 1069, 1165
BstMAI GTCTC 1 cut(s) 338
BstMBI GATC 6 cut(s) 472, 602, 727, 953, 1066, 1162
BstMWI GCNNNNNNNGC 3 cut(s) 218, 227, 393
BstNSI RCATGY 1 cut(s) 396
BstSFI CTRYAG 1 cut(s) 1113
BstUI CGCG 1 cut(s) 205
BstV1I GCAGC 1 cut(s) 1028
BstV2I GAAGAC 2 cut(s) 695, 932
BstX2I RGATCY 1 cut(s) 953
BstYI RGATCY 1 cut(s) 953
BstZ17I GTATAC 1 cut(s) 662
BsuI GTATCC 1 cut(s) 934
BsuRI GGCC 2 cut(s) 811, 853
BtrI CACGTC 1 cut(s) 458
BtsCI GGATG 3 cut(s) 79, 97, 997
BtsI GCAGTG 2 cut(s) 530, 883
BtsIMutI CAGTG 3 cut(s) 187, 530, 883
Cac8I GCNNGC 2 cut(s) 137, 394
CaiI CAGNNNCTG 1 cut(s) 956
Cfr13I GGNCC 1 cut(s) 851
CseI GACGC 3 cut(s) 194, 1109, 1124
Csp6I GTAC 2 cut(s) 128, 634
CviAII CATG 3 cut(s) 302, 393, 893
CviQI GTAC 2 cut(s) 128, 634
DdeI CTNAG 6 cut(s) 318, 585, 708, 720, 945, 1191
DpnI GATC 6 cut(s) 474, 604, 729, 955, 1068, 1164
DpnII GATC 6 cut(s) 472, 602, 727, 953, 1066, 1162
DraIII CACNNNGTG 1 cut(s) 630
Eam1104I CTCTTC 1 cut(s) 509
EarI CTCTTC 1 cut(s) 509
Eco24I GRGCYC 4 cut(s) 553, 726, 839, 1150
Eco57I CTGAAG 2 cut(s) 780, 996
Eco72I CACGTG 1 cut(s) 611
Eco88I CYCGRG 1 cut(s) 598
EcoNI CCTNNNNNAGG 1 cut(s) 948
EcoT38I GRGCYC 4 cut(s) 553, 726, 839, 1150
FaeI CATG 3 cut(s) 305, 396, 896
FaqI GGGAC 2 cut(s) 282, 931
FatI CATG 3 cut(s) 301, 392, 892
FbaI TGATCA 2 cut(s) 472, 1162
FblI GTMKAC 1 cut(s) 661
Fnu4HI GCNGC 1 cut(s) 1017
FokI GGATG 3 cut(s) 66, 104, 984
FriOI GRGCYC 4 cut(s) 553, 726, 839, 1150
Fsp4HI GCNGC 1 cut(s) 1017
FspBI CTAG 3 cut(s) 209, 840, 1074
GluI GCNGC 1 cut(s) 1017
HaeIII GGCC 2 cut(s) 811, 853
HapII CCGG 1 cut(s) 83
HgaI GACGC 3 cut(s) 194, 1109, 1124
Hin1I GRCGYC 1 cut(s) 1135
Hin1II CATG 3 cut(s) 305, 396, 896
HindIII AAGCTT 1 cut(s) 654
HinfI GANTC 4 cut(s) 346, 817, 823, 937
HpaII CCGG 1 cut(s) 83
HphI GGTGA 2 cut(s) 47, 946
Hpy166II GTNNAC 4 cut(s) 167, 662, 748, 995
Hpy188I TCNGA 7 cut(s) 355, 477, 711, 792, 822, 1125, 1194
Hpy188III TCNNGA 8 cut(s) 272, 311, 598, 697, 719, 927, 976, 1074
Hpy8I GTNNAC 4 cut(s) 167, 662, 748, 995
Hpy99I CGWCG 1 cut(s) 174
HpyAV CCTTC 5 cut(s) 407, 608, 1011, 1020, 1080
HpyCH4III ACNGT 6 cut(s) 59, 159, 182, 922, 992, 1183
HpyCH4IV ACGT 2 cut(s) 457, 610
HpyCH4V TGCA 6 cut(s) 29, 230, 392, 455, 624, 639
HpyF10VI GCNNNNNNNGC 3 cut(s) 218, 227, 393
HpyF3I CTNAG 6 cut(s) 318, 585, 708, 720, 945, 1191
HpySE526I ACGT 2 cut(s) 457, 610
Hsp92I GRCGYC 1 cut(s) 1135
Hsp92II CATG 3 cut(s) 305, 396, 896
Ksp22I TGATCA 2 cut(s) 472, 1162
Kzo9I GATC 6 cut(s) 472, 602, 727, 953, 1066, 1162
Lsp1109I GCAGC 1 cut(s) 1028
MaeI CTAG 3 cut(s) 209, 840, 1074
MaeII ACGT 2 cut(s) 457, 610
MalI GATC 6 cut(s) 474, 604, 729, 955, 1068, 1164
MbiI CCGCTC 2 cut(s) 176, 1079
MboI GATC 6 cut(s) 472, 602, 727, 953, 1066, 1162
MboII GAAGA 6 cut(s) 526, 548, 700, 818, 932, 1186
MflI RGATCY 1 cut(s) 953
MhlI GDGCHC 4 cut(s) 553, 726, 839, 1150
MluCI AATT 5 cut(s) 69, 246, 461, 554, 1083
MlyI GAGTC 3 cut(s) 340, 826, 946
MmeI TCCRAC 1 cut(s) 1057
MroXI GAANNNNTTC 2 cut(s) 150, 692
MseI TTAA 3 cut(s) 15, 888, 912
MslI CAYNNNNRTG 1 cut(s) 160
MspI CCGG 1 cut(s) 83
Mva1269I GAATGC 1 cut(s) 626
MvnI CGCG 1 cut(s) 205
MwoI GCNNNNNNNGC 3 cut(s) 218, 227, 393
NdeII GATC 6 cut(s) 472, 602, 727, 953, 1066, 1162
NlaIII CATG 3 cut(s) 305, 396, 896
NspI RCATGY 1 cut(s) 396
OliI CACNNNNGTG 1 cut(s) 160
PaeI GCATGC 1 cut(s) 396
PctI GAATGC 1 cut(s) 626
PdmI GAANNNNTTC 2 cut(s) 150, 692
PfeI GAWTC 1 cut(s) 823
PflFI GACNNNGTC 1 cut(s) 349
PkrI GCNGC 1 cut(s) 1018
PleI GAGTC 3 cut(s) 340, 825, 945
PmaCI CACGTG 1 cut(s) 611
PmlI CACGTG 1 cut(s) 611
PpsI GAGTC 3 cut(s) 340, 825, 945
Ppu21I YACGTR 1 cut(s) 611
PspCI CACGTG 1 cut(s) 611
PspPI GGNCC 1 cut(s) 851
PsrI GAACNNNNNNTAC 2 cut(s) 78, 110
PstNI CAGNNNCTG 1 cut(s) 956
PsuI RGATCY 1 cut(s) 953
PsyI GACNNNGTC 1 cut(s) 349
RsaI GTAC 2 cut(s) 129, 635
RsaNI GTAC 2 cut(s) 128, 634
RseI CAYNNNNRTG 1 cut(s) 160
SaqAI TTAA 3 cut(s) 15, 888, 912
SatI GCNGC 1 cut(s) 1017
Sau3AI GATC 6 cut(s) 472, 602, 727, 953, 1066, 1162
Sau96I GGNCC 1 cut(s) 851
SchI GAGTC 3 cut(s) 340, 826, 946
SduI GDGCHC 4 cut(s) 553, 726, 839, 1150
SfcI CTRYAG 1 cut(s) 1113
SmiMI CAYNNNNRTG 1 cut(s) 160
SmlI CTYRAG 1 cut(s) 974
SmoI CTYRAG 1 cut(s) 974
SphI GCATGC 1 cut(s) 396
Sse9I AATT 5 cut(s) 69, 246, 461, 554, 1083
SsiI CCGC 5 cut(s) 176, 203, 493, 770, 1079
SspI AATATT 1 cut(s) 149
SspMI CTAG 3 cut(s) 209, 840, 1074
TaaI ACNGT 6 cut(s) 59, 159, 182, 922, 992, 1183
TaiI ACGT 2 cut(s) 460, 613
TaqI TCGA 5 cut(s) 312, 512, 605, 686, 1093
TasI AATT 5 cut(s) 69, 246, 461, 554, 1083
TatI WGTACW 1 cut(s) 127
TfiI GAWTC 1 cut(s) 823
Tru1I TTAA 3 cut(s) 15, 888, 912
Tru9I TTAA 3 cut(s) 15, 888, 912
TscAI CASTG 3 cut(s) 187, 530, 883
TseI GCWGC 1 cut(s) 1016
TspDTI ATGAA 1 cut(s) 786
TspRI CASTG 3 cut(s) 187, 530, 883
Tth111I GACNNNGTC 1 cut(s) 349
XagI CCTNNNNNAGG 1 cut(s) 948
XbaI TCTAGA 1 cut(s) 1073
XceI RCATGY 1 cut(s) 396
XmiI GTMKAC 1 cut(s) 661
XmnI GAANNNNTTC 2 cut(s) 150, 692
XspI CTAG 3 cut(s) 209, 840, 1074
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.