Rmu_sc0006550.1_g000019

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_multiflora
Rmu_sc0006550.1
OG0000253
Physical Location & Seq
Reverse (-)
94793 .. 99373
4581 bp
Loading structure...
UTR
Exon/CDS
Intron
Rmu_sc0006550.1_g000019.1.cds

Sequence Viewer

Length: 609 bp
atgctggagggggcggatcagacattggctactactaggatccttgagcagaatactaccatggatattgaactcgaggagtgtatgaaatccaagataacttttgagtctcaactcgcaagatcttccaaagagttagaagccttgaaaactacgaaatctaacatcatagcaaatgaacagcgagttcagaaaaggcgattagaatatgatgttaagaggcaatctcttgaagacactctgcaggttctgaagaactcctttaaagagcaagatgaaaaagggcaaaagtttcaagaagacaagtttgcttatatggcagagaaactctcggagattgagcaggttacaacttcatacaagttggaaacagaggtagggctcaggaggcttaatcgcagaacggtgctgcagcaattggaggctgagaatcatggaagggccagtaaggtggcatttgagcatgtgcttgcccagattgctgatgaaagggtggaattccagggtcatgtgatgtggattctaccctttgtgacattgttcagcattctgttcatattgccattgcagctgctgatgcttctttttcattctctgaaacttgtgtga
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

202

Amino Acids

23.56

Weight (kDa)

5.91

Isoelectric Point (pI)

59.85

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
Loading...
Style Settings
Image
Tree File
Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0000253)

Species Orthologous Gene IDs
fragaria_vesca FvH4_1g28912 FvH4_3g31370 FvH4_3g31371 FvH4_4g10340 FvH4_4g10340 FvH4_4g10340 FvH4_4g10340 FvH4_4g10340 FvH4_4g10340 FvH4_4g10340 FvH4_6g28991 FvH4_7g16740 FvH4_7g18610 FvH4_7g18610 FvH4_7g18610 FvH4_7g18610 FvH4_7g18610
malus_domestica MD10G1126100.v1.1 MD10G1312700.v1.1
rosa_chinensis RchiOBHm_Chr6g0276621
rosa_laevigata RLG00000023327 RLG00000023328
rosa_multiflora Rmu_co8195922.1_g000001 Rmu_co8303105.1_g000001 Rmu_co8385689.1_g000001 Rmu_sc0000385.1_g000010 Rmu_sc0000594.1_g000002 Rmu_sc0000857.1_g000010 Rmu_sc0001016.1_g000053 Rmu_sc0001468.1_g000028 Rmu_sc0001548.1_g000047 Rmu_sc0001548.1_g000048 Rmu_sc0002281.1_g000026 Rmu_sc0002281.1_g000027 Rmu_sc0002281.1_g000028 Rmu_sc0002478.1_g000001 Rmu_sc0002513.1_g000014 Rmu_sc0002662.1_g000017 Rmu_sc0003936.1_g000040 Rmu_sc0004084.1_g000047 Rmu_sc0005529.1_g000005 Rmu_sc0005529.1_g000006 Rmu_sc0005728.1_g000010 Rmu_sc0005747.1_g000017 Rmu_sc0005747.1_g000018 Rmu_sc0006385.1_g000001 Rmu_sc0006550.1_g000019 Rmu_sc0006803.1_g000033 Rmu_sc0007102.1_g000011 Rmu_sc0011018.1_g000001 Rmu_sc0011452.1_g000014 Rmu_sc0011805.1_g000001 Rmu_sc0011805.1_g000002 Rmu_sc0012566.1_g000001 Rmu_sc0013807.1_g000007 Rmu_sc0015817.1_g000001 Rmu_sc0015930.1_g000011 Rmu_sc0018873.1_g000003 Rmu_sc0020929.1_g000001
rosa_roxburghii Rroxscaffold_2G00081310 Rroxscaffold_2G00111790 Rroxscaffold_5G00349530 Rroxscaffold_5G00356270 Rroxscaffold_5G00356280 Rroxscaffold_5G00356290
rosa_rugosa Rorug01G0056400 Rorug01G0056500 Rorug02G0247000 Rorug03G0271700 Rorug04G0157900 Rorug05G0221700 Rorug05G0251400 Rorug05G0251400 Rorug06G0087300 Rorug07G0221900 Rorug07G0221900
rosa_samantha Rh1AG073200 Rh1AG073300 Rh1AG124600 Rh1AG124700 Rh1BG091900 Rh1CG031600 Rh1CG072100 Rh1CG072200 Rh1CG118800 Rh1CG276600 Rh1CG276700 Rh1DG077300 Rh2BG192000 Rh2BG330900 Rh2BG331000 Rh2BG517700 Rh2BG517800 Rh2CG188300 Rh2DG120800 Rh2DG323900 Rh2DG420700 Rh2DG433000 Rh2DG529400 Rh2DG529500 Rh3DG358100 Rh3DG358200 Rh4BG129700 Rh4BG129800 Rh4BG129900 Rh4BG166400 Rh4CG032000 Rh4DG024800 Rh4DG039500 Rh5AG223400 Rh5BG244500 Rh5BG244600 Rh5BG244700 Rh5CG363000 Rh5CG366900 Rh6AG117500 Rh6AG188600 Rh6AG188700 Rh6AG188800 Rh6BG111400 Rh6BG140800 Rh6BG178800 Rh6DG124100 Rh6DG210000 Rh7AG441200 Rh7BG296800 Rh7BG413900 Rh7BG414000 Rh7BG452400 Rh7DG234000 Rh7DG234100
rosa_wichuraiana Rw2G019410 Rw5G042140 Rw7G019590

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc36I ACCTGC 2 cut(s) 235, 334
AciI CCGC 1 cut(s) 14
AclWI GGATC 3 cut(s) 24, 34, 47
AcsI RAATTY 1 cut(s) 497
AcuI CTGAAG 1 cut(s) 272
AgsI TTSAA 4 cut(s) 71, 148, 233, 296
AjnI CCWGG 1 cut(s) 501
AluBI AGCT 1 cut(s) 571
AluI AGCT 1 cut(s) 571
Alw26I GTCTC 1 cut(s) 114
AlwI GGATC 3 cut(s) 24, 34, 47
AlwNI CAGNNNCTG 2 cut(s) 250, 574
Ama87I CYCGRG 1 cut(s) 74
AoxI GGCC 1 cut(s) 441
ApeKI GCWGC 4 cut(s) 409, 412, 568, 571
ApoI RAATTY 1 cut(s) 497
AspS9I GGNCC 1 cut(s) 441
AvaI CYCGRG 1 cut(s) 74
BamHI GGATCC 1 cut(s) 39
BanII GRGCYC 1 cut(s) 384
BbsI GAAGAC 2 cut(s) 240, 306
BbvI GCAGC 4 cut(s) 396, 424, 558, 580
BciT130I CCWGG 1 cut(s) 503
BcoDI GTCTC 1 cut(s) 114
BfaI CTAG 1 cut(s) 36
BfmI CTRYAG 2 cut(s) 242, 410
BfuAI ACCTGC 2 cut(s) 235, 334
BglII AGATCT 1 cut(s) 122
BisI GCNGC 4 cut(s) 410, 413, 569, 572
BlsI GCNGC 4 cut(s) 411, 414, 570, 573
Bme1390I CCNGG 1 cut(s) 503
BmeT110I CYCGRG 1 cut(s) 74
BmgT120I GGNCC 1 cut(s) 441
BmiI GGNNCC 1 cut(s) 41
BmrFI CCNGG 1 cut(s) 503
BmsI GCATC 1 cut(s) 567
BpiI GAAGAC 2 cut(s) 240, 306
BplI GAGNNNNNCTC 4 cut(s) 211, 243, 314, 346
BpmI CTGGAG 1 cut(s) 26
Bpu10I CCTNAGC 1 cut(s) 383
BpuEI CTTGAG 1 cut(s) 65
BsaJI CCNNGG 2 cut(s) 60, 502
Bse1I ACTGG 1 cut(s) 444
Bse3DI GCAATG 1 cut(s) 563
BseBI CCWGG 1 cut(s) 503
BseDI CCNNGG 2 cut(s) 60, 502
BseMI GCAATG 1 cut(s) 563
BseMII CTCAG 2 cut(s) 397, 417
BseNI ACTGG 1 cut(s) 444
BseRI GAGGAG 1 cut(s) 92
BseXI GCAGC 4 cut(s) 396, 424, 558, 580
BshFI GGCC 1 cut(s) 443
BsiHKCI CYCGRG 1 cut(s) 74
BsmAI GTCTC 1 cut(s) 114
BsmI GAATGC 1 cut(s) 546
BsnI GGCC 1 cut(s) 443
BsoBI CYCGRG 1 cut(s) 74
Bsp1286I GDGCHC 1 cut(s) 384
Bsp143I GATC 3 cut(s) 16, 39, 122
Bsp19I CCATGG 1 cut(s) 60
BspACI CCGC 1 cut(s) 14
BspANI GGCC 1 cut(s) 443
BspCNI CTCAG 2 cut(s) 396, 418
BspLI GGNNCC 1 cut(s) 41
BspMAI CTGCAG 2 cut(s) 246, 414
BspMI ACCTGC 2 cut(s) 235, 334
BspPI GGATC 3 cut(s) 24, 34, 47
BsrDI GCAATG 1 cut(s) 563
BsrI ACTGG 1 cut(s) 444
BssECI CCNNGG 2 cut(s) 60, 502
BssMI GATC 3 cut(s) 16, 39, 122
BssT1I CCWWGG 1 cut(s) 60
Bst2UI CCWGG 1 cut(s) 503
Bst4CI ACNGT 1 cut(s) 406
BstC8I GCNNGC 1 cut(s) 471
BstDEI CTNAG 2 cut(s) 383, 426
BstDSI CCRYGG 1 cut(s) 60
BstKTI GATC 3 cut(s) 19, 42, 125
BstMAI GTCTC 1 cut(s) 114
BstMBI GATC 3 cut(s) 16, 39, 122
BstMWI GCNNNNNNNGC 5 cut(s) 317, 388, 479, 568, 577
BstNI CCWGG 1 cut(s) 503
BstNSI RCATGY 1 cut(s) 467
BstSCI CCNGG 1 cut(s) 501
BstSFI CTRYAG 2 cut(s) 242, 410
BstV1I GCAGC 4 cut(s) 396, 424, 558, 580
BstV2I GAAGAC 2 cut(s) 240, 306
BstX2I RGATCY 2 cut(s) 39, 122
BstXI CCANNNNNNTGG 1 cut(s) 451
BstYI RGATCY 2 cut(s) 39, 122
BsuRI GGCC 1 cut(s) 443
BtgI CCRYGG 1 cut(s) 60
BveI ACCTGC 2 cut(s) 235, 334
Cac8I GCNNGC 1 cut(s) 471
CaiI CAGNNNCTG 2 cut(s) 250, 574
Cfr13I GGNCC 1 cut(s) 441
CviAII CATG 4 cut(s) 61, 434, 464, 509
CviJI RGCY 7 cut(s) 29, 143, 382, 391, 425, 443, 571
CviKI_1 RGCY 7 cut(s) 29, 143, 382, 391, 425, 443, 571
DdeI CTNAG 2 cut(s) 383, 426
DpnI GATC 3 cut(s) 18, 41, 124
DpnII GATC 3 cut(s) 16, 39, 122
DraI TTTAAA 1 cut(s) 265
EciI GGCGGA 1 cut(s) 29
Eco130I CCWWGG 1 cut(s) 60
Eco24I GRGCYC 1 cut(s) 384
Eco57I CTGAAG 1 cut(s) 272
Eco88I CYCGRG 1 cut(s) 74
EcoRI GAATTC 1 cut(s) 497
EcoRII CCWGG 1 cut(s) 501
EcoT14I CCWWGG 1 cut(s) 60
EcoT38I GRGCYC 1 cut(s) 384
ErhI CCWWGG 1 cut(s) 60
FaeI CATG 4 cut(s) 64, 437, 467, 512
FalI AAGNNNNNCTT 2 cut(s) 245, 277
FatI CATG 4 cut(s) 60, 433, 463, 508
Fnu4HI GCNGC 4 cut(s) 410, 413, 569, 572
FriOI GRGCYC 1 cut(s) 384
Fsp4HI GCNGC 4 cut(s) 410, 413, 569, 572
FspBI CTAG 1 cut(s) 36
GluI GCNGC 4 cut(s) 410, 413, 569, 572
GsuI CTGGAG 1 cut(s) 26
HaeIII GGCC 1 cut(s) 443
Hin1II CATG 4 cut(s) 64, 437, 467, 512
HinfI GANTC 3 cut(s) 107, 430, 520
Hpy188I TCNGA 5 cut(s) 21, 192, 252, 334, 597
Hpy188III TCNNGA 3 cut(s) 230, 296, 385
HpyAV CCTTC 1 cut(s) 432
HpyCH4III ACNGT 1 cut(s) 406
HpyCH4V TGCA 3 cut(s) 244, 412, 568
HpyF10VI GCNNNNNNNGC 5 cut(s) 317, 388, 479, 568, 577
HpyF3I CTNAG 2 cut(s) 383, 426
Hsp92II CATG 4 cut(s) 64, 437, 467, 512
Kzo9I GATC 3 cut(s) 16, 39, 122
LpnPI CCDG 7 cut(s) 230, 329, 370, 457, 488, 488, 515
Lsp1109I GCAGC 4 cut(s) 396, 424, 558, 580
LweI GCATC 1 cut(s) 567
MaeI CTAG 1 cut(s) 36
MaeIII GTNAC 2 cut(s) 346, 532
MalI GATC 3 cut(s) 18, 41, 124
MboI GATC 3 cut(s) 16, 39, 122
MboII GAAGA 4 cut(s) 117, 245, 265, 311
MfeI CAATTG 1 cut(s) 416
MflI RGATCY 2 cut(s) 39, 122
MhlI GDGCHC 1 cut(s) 384
MluCI AATT 2 cut(s) 416, 497
MlyI GAGTC 1 cut(s) 116
MmeI TCCRAC 1 cut(s) 345
MnlI CCTC 5 cut(s) 70, 213, 367, 381, 415
MseI TTAA 3 cut(s) 216, 264, 393
MspA1I CMGCKG 1 cut(s) 571
MspR9I CCNGG 1 cut(s) 503
MunI CAATTG 1 cut(s) 416
Mva1269I GAATGC 1 cut(s) 546
MvaI CCWGG 1 cut(s) 503
MwoI GCNNNNNNNGC 5 cut(s) 317, 388, 479, 568, 577
NcoI CCATGG 1 cut(s) 60
NdeII GATC 3 cut(s) 16, 39, 122
NlaIII CATG 4 cut(s) 64, 437, 467, 512
NlaIV GGNNCC 1 cut(s) 41
NmuCI GTSAC 1 cut(s) 532
NspI RCATGY 1 cut(s) 467
PaeR7I CTCGAG 1 cut(s) 74
PctI GAATGC 1 cut(s) 546
PfeI GAWTC 2 cut(s) 430, 520
PkrI GCNGC 4 cut(s) 411, 414, 570, 573
PleI GAGTC 1 cut(s) 115
PpsI GAGTC 1 cut(s) 115
Psp6I CCWGG 1 cut(s) 501
PspGI CCWGG 1 cut(s) 501
PspN4I GGNNCC 1 cut(s) 41
PspPI GGNCC 1 cut(s) 441
PspXI VCTCGAGB 1 cut(s) 74
PstI CTGCAG 2 cut(s) 246, 414
PstNI CAGNNNCTG 2 cut(s) 250, 574
PsuI RGATCY 2 cut(s) 39, 122
PvuII CAGCTG 1 cut(s) 571
SaqAI TTAA 3 cut(s) 216, 264, 393
SatI GCNGC 4 cut(s) 410, 413, 569, 572
Sau3AI GATC 3 cut(s) 16, 39, 122
Sau96I GGNCC 1 cut(s) 441
SchI GAGTC 1 cut(s) 116
ScrFI CCNGG 1 cut(s) 503
SduI GDGCHC 1 cut(s) 384
SetI ASST 5 cut(s) 249, 348, 378, 453, 573
SfaNI GCATC 1 cut(s) 567
SfcI CTRYAG 2 cut(s) 242, 410
Sfr274I CTCGAG 1 cut(s) 74
SlaI CTCGAG 1 cut(s) 74
SmlI CTYRAG 2 cut(s) 44, 74
SmoI CTYRAG 2 cut(s) 44, 74
Sse9I AATT 2 cut(s) 416, 497
SsiI CCGC 1 cut(s) 14
SspMI CTAG 1 cut(s) 36
StyD4I CCNGG 1 cut(s) 501
StyI CCWWGG 1 cut(s) 60
TaaI ACNGT 1 cut(s) 406
TaqI TCGA 1 cut(s) 75
TasI AATT 2 cut(s) 416, 497
TfiI GAWTC 2 cut(s) 430, 520
Tru1I TTAA 3 cut(s) 216, 264, 393
Tru9I TTAA 3 cut(s) 216, 264, 393
TseFI GTSAC 1 cut(s) 532
TseI GCWGC 4 cut(s) 409, 412, 568, 571
Tsp45I GTSAC 1 cut(s) 532
TspDTI ATGAA 7 cut(s) 101, 192, 291, 345, 501, 544, 578
XapI RAATTY 1 cut(s) 497
XceI RCATGY 1 cut(s) 467
XhoI CTCGAG 1 cut(s) 74
XspI CTAG 1 cut(s) 36
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.