Basic Information

Type: gene

Biological Identity

Species

fragaria_vesca

Chromosome

Fvb1

Orthogroup ID

OG0000314

Physical Location & Seq

Genomic Coordinates Forward (+)

1235303 .. 1237700

Gene Structure 2398 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

FvH4_1g02272.t1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 504 bp

ATGCACTACGATATGATAGTTGGTAACAAGGCTGATCTCTACTCCATACCTTCCGCAAAGGTGCAATTGAAGATTATGCTTCGCCAAATGACAAAGATGCATGGGGGGCTAAGAGACTTGCCCTACGAGCAGCGTTTTCTAAATTTTCAAGTGAGTGACACAAAGCATCTCTGCTCAACACTTGGAAGTTCTCGCAAGAGAGAGTCTCATGCCGCGAATGTCAACATGTCAAGGCTTCGAGTGAAGCATTGGTGGCCTCCCCCGTGGCCAAACGAAGGAACGGCGGCGCTAGTGTGTTGCGTGACAGAGATCAGAGATCGGCTTGCATTGCCGACACCTTTGGTTTTGATGGTTAGAGATCGGAGCTCCACTGCTCGACGCGACCGCGTTGGTGAAGAAGCATCGACGAAGATTGTGCTGGGGTCGGCAGATCTGAGAACTTTGCTGATGGATCTGAGAATGTTGCAGGCAACCTCAACCTCGTCAGTGGCGGAGGCGCGTTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003676 GO:0003723 GO:0003824 GO:0004652 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005829 GO:0006139 GO:0006276 GO:0006378 GO:0006396 GO:0006397 GO:0006725 GO:0006807 GO:0008150 GO:0008152 GO:0009451 GO:0009987 GO:0010467 GO:0016070 GO:0016071 GO:0016740 GO:0016772 GO:0016779 GO:0031123 GO:0031124 GO:0034641 GO:0043170 GO:0043412 GO:0043631 GO:0044237 GO:0044238 GO:0044424 GO:0044444 GO:0044464 GO:0046483 GO:0070566 GO:0071704 GO:0090304 GO:0097159 GO:1901360 GO:1901363

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

PolyA_pol PolyA_pol_RNAbd

Protein Analysis

168

Amino Acids

18.9

Weight (kDa)

9.95

Isoelectric Point (pI)

49.52

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0000314)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_1g02272 FvH4_1g22661 FvH4_2g10242 FvH4_2g34051 FvH4_3g19221 FvH4_3g29651 FvH4_3g30891 FvH4_4g11061 FvH4_5g09250 FvH4_5g15302 FvH4_5g15303 FvH4_5g15304 FvH4_5g28521 FvH4_6g23591 FvH4_7g05710 FvH4_7g19520
pyrus_communis	pycom07g06330
rosa_chinensis	RchiOBHm_Chr5g0027301 RchiOBHm_Chr6g0251451 RchiOBHm_Chr6g0274861
rosa_laevigata	RLG00000007850
rosa_multiflora	Rmu_co8230721.1_g000001 Rmu_sc0000271.1_g000027 Rmu_sc0000303.1_g000024 Rmu_sc0000368.1_g000024 Rmu_sc0000621.1_g000037 Rmu_sc0000693.1_g000081 Rmu_sc0001229.1_g000006 Rmu_sc0001373.1_g000003 Rmu_sc0001459.1_g000001 Rmu_sc0001744.1_g000002 Rmu_sc0001909.1_g000002 Rmu_sc0002053.1_g000012 Rmu_sc0002060.1_g000015 Rmu_sc0002119.1_g000036 Rmu_sc0002177.1_g000007 Rmu_sc0002822.1_g000024 Rmu_sc0002965.1_g000015 Rmu_sc0003363.1_g000051 Rmu_sc0003500.1_g000013 Rmu_sc0004191.1_g000020 Rmu_sc0004904.1_g000032 Rmu_sc0005325.1_g000008 Rmu_sc0005947.1_g000040 Rmu_sc0006475.1_g000001 Rmu_sc0006522.1_g000019 Rmu_sc0007102.1_g000005 Rmu_sc0007810.1_g000003 Rmu_sc0008339.1_g000025 Rmu_sc0008698.1_g000004 Rmu_sc0009313.1_g000006 Rmu_sc0009850.1_g000006 Rmu_sc0010598.1_g000003 Rmu_sc0011162.1_g000002 Rmu_sc0011824.1_g000004 Rmu_sc0011900.1_g000010 Rmu_sc0012291.1_g000006 Rmu_sc0012619.1_g000003 Rmu_sc0014679.1_g000001 Rmu_sc0019053.1_g000001 Rmu_sc0021462.1_g000003 Rmu_sc0024172.1_g000001 Rmu_sc0024173.1_g000001 Rmu_ssc0000052.1_g000016 Rmu_ssc0000392.1_g000010 Rmu_ssc0000421.1_g000062 Rmu_ssc0000479.1_g000006
rosa_roxburghii	Rroxscaffold_153G00436600 Rroxscaffold_1G00008580 Rroxscaffold_1G00016770 Rroxscaffold_1G00029550 Rroxscaffold_1G00036450 Rroxscaffold_1G00040410 Rroxscaffold_1G00047110 Rroxscaffold_1G00060570 Rroxscaffold_2G00081500 Rroxscaffold_2G00081510 Rroxscaffold_2G00086080 Rroxscaffold_2G00099620 Rroxscaffold_2G00099630 Rroxscaffold_2G00099640 Rroxscaffold_2G00109170 Rroxscaffold_2G00127750 Rroxscaffold_2G00128590 Rroxscaffold_2G00130780 Rroxscaffold_2G00131040 Rroxscaffold_2G00143160 Rroxscaffold_3G00229280 Rroxscaffold_3G00229290 Rroxscaffold_3G00229970 Rroxscaffold_3G00242860 Rroxscaffold_3G00242890 Rroxscaffold_3G00242900 Rroxscaffold_3G00248200 Rroxscaffold_4G00284550 Rroxscaffold_4G00288780 Rroxscaffold_4G00298620 Rroxscaffold_4G00298630 Rroxscaffold_4G00312420 Rroxscaffold_4G00320310 Rroxscaffold_4G00322220 Rroxscaffold_4G00323600 Rroxscaffold_4G00331830 Rroxscaffold_4G00332010 Rroxscaffold_4G00332020 Rroxscaffold_5G00344470 Rroxscaffold_5G00345310 Rroxscaffold_5G00356120 Rroxscaffold_5G00368700 Rroxscaffold_5G00379820 Rroxscaffold_5G00382480 Rroxscaffold_6G00395080 Rroxscaffold_6G00405520 Rroxscaffold_6G00428210 Rroxscaffold_7G00193460
rosa_samantha	Rh7CG413200 Rh7DG284900

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccII	CGCG	4 cut(s)	215, 381, 387, 499
AciI	CCGC	5 cut(s)	54, 213, 284, 385, 491
AclWI	GGATC	1 cut(s)	459
AcoI	YGGCCR	1 cut(s)	266
AcsI	RAATTY	1 cut(s)	142
AfiI	CCNNNNNNNGG	1 cut(s)	275
AflIII	ACRYGT	1 cut(s)	225
AgsI	TTSAA	2 cut(s)	70, 149
AluBI	AGCT	1 cut(s)	366
AluI	AGCT	1 cut(s)	366
Alw21I	GWGCWC	1 cut(s)	368
Alw26I	GTCTC	2 cut(s)	108, 210
AlwI	GGATC	1 cut(s)	459
AoxI	GGCC	2 cut(s)	254, 266
ApeKI	GCWGC	1 cut(s)	130
ApoI	RAATTY	1 cut(s)	142
AspLEI	GCGC	2 cut(s)	289, 499
AsuHPI	GGTGA	1 cut(s)	404
BalI	TGGCCA	1 cut(s)	268
BanII	GRGCYC	1 cut(s)	368
Bbv12I	GWGCWC	1 cut(s)	368
BbvI	GCAGC	1 cut(s)	142
BccI	CCATC	2 cut(s)	343, 442
BceAI	ACGGC	1 cut(s)	297
BcgI	CGANNNNNNTGC	2 cut(s)	397, 431
BcoDI	GTCTC	2 cut(s)	108, 210
BfaI	CTAG	1 cut(s)	290
BfoI	RGCGCY	1 cut(s)	290
BglII	AGATCT	1 cut(s)	430
BisI	GCNGC	3 cut(s)	131, 213, 285
BlsI	GCNGC	3 cut(s)	132, 214, 286
BmsI	GCATC	3 cut(s)	87, 175, 410
BplI	GAGNNNNNCTC	2 cut(s)	190, 222
BsaJI	CCNNGG	1 cut(s)	263
Bsc4I	CCNNNNNNNGG	1 cut(s)	275
Bse3DI	GCAATG	1 cut(s)	326
BseDI	CCNNGG	1 cut(s)	263
BseLI	CCNNNNNNNGG	1 cut(s)	275
BseMI	GCAATG	1 cut(s)	326
BseMII	CTCAG	2 cut(s)	425, 446
BseXI	GCAGC	1 cut(s)	142
BseYI	CCCAGC	1 cut(s)	418
Bsh1236I	CGCG	4 cut(s)	215, 381, 387, 499
Bsh1285I	CGRYCG	1 cut(s)	385
BshFI	GGCC	2 cut(s)	256, 268
BsiEI	CGRYCG	1 cut(s)	385
BsiHKAI	GWGCWC	1 cut(s)	368
BslI	CCNNNNNNNGG	1 cut(s)	275
BsmAI	GTCTC	2 cut(s)	108, 210
BsnI	GGCC	2 cut(s)	256, 268
Bsp1286I	GDGCHC	1 cut(s)	368
Bsp143I	GATC	6 cut(s)	34, 309, 316, 358, 430, 451
BspACI	CCGC	5 cut(s)	54, 213, 284, 385, 491
BspANI	GGCC	2 cut(s)	256, 268
BspCNI	CTCAG	2 cut(s)	426, 447
BspFNI	CGCG	4 cut(s)	215, 381, 387, 499
BspPI	GGATC	1 cut(s)	459
BsrDI	GCAATG	1 cut(s)	326
BssECI	CCNNGG	1 cut(s)	263
BssMI	GATC	6 cut(s)	34, 309, 316, 358, 430, 451
BstC8I	GCNNGC	2 cut(s)	324, 468
BstDEI	CTNAG	3 cut(s)	110, 434, 455
BstDSI	CCRYGG	1 cut(s)	263
BstFNI	CGCG	4 cut(s)	215, 381, 387, 499
BstH2I	RGCGCY	1 cut(s)	290
BstHHI	GCGC	2 cut(s)	289, 499
BstKTI	GATC	6 cut(s)	37, 312, 319, 361, 433, 454
BstMAI	GTCTC	2 cut(s)	108, 210
BstMBI	GATC	6 cut(s)	34, 309, 316, 358, 430, 451
BstMCI	CGRYCG	1 cut(s)	385
BstMWI	GCNNNNNNNGC	4 cut(s)	106, 127, 253, 328
BstNSI	RCATGY	1 cut(s)	229
BstUI	CGCG	4 cut(s)	215, 381, 387, 499
BstV1I	GCAGC	1 cut(s)	142
BstX2I	RGATCY	2 cut(s)	430, 451
BstYI	RGATCY	2 cut(s)	430, 451
BsuRI	GGCC	2 cut(s)	256, 268
BtgI	CCRYGG	1 cut(s)	263
BtsI	GCAGTG	1 cut(s)	369
BtsIMutI	CAGTG	2 cut(s)	369, 492
Cac8I	GCNNGC	2 cut(s)	324, 468
CfoI	GCGC	2 cut(s)	289, 499
CseI	GACGC	1 cut(s)	387
CviAII	CATG	3 cut(s)	101, 209, 226
CviJI	RGCY	7 cut(s)	32, 109, 235, 256, 268, 322, 366
CviKI_1	RGCY	7 cut(s)	32, 109, 235, 256, 268, 322, 366
DdeI	CTNAG	3 cut(s)	110, 434, 455
DpnI	GATC	6 cut(s)	36, 311, 318, 360, 432, 453
DpnII	GATC	6 cut(s)	34, 309, 316, 358, 430, 451
EaeI	YGGCCR	1 cut(s)	266
Ecl136II	GAGCTC	1 cut(s)	366
Eco24I	GRGCYC	1 cut(s)	368
Eco53kI	GAGCTC	1 cut(s)	366
EcoICRI	GAGCTC	1 cut(s)	366
EcoT22I	ATGCAT	1 cut(s)	102
EcoT38I	GRGCYC	1 cut(s)	368
FaeI	CATG	3 cut(s)	104, 212, 229
FaiI	YATR	6 cut(s)	14, 47, 77, 102, 210, 227
FatI	CATG	3 cut(s)	100, 208, 225
Fnu4HI	GCNGC	3 cut(s)	131, 213, 285
FriOI	GRGCYC	1 cut(s)	368
Fsp4HI	GCNGC	3 cut(s)	131, 213, 285
FspBI	CTAG	1 cut(s)	290
GlaI	GCGC	2 cut(s)	288, 498
GluI	GCNGC	3 cut(s)	131, 213, 285
GsaI	CCCAGC	1 cut(s)	422
HaeII	RGCGCY	1 cut(s)	290
HaeIII	GGCC	2 cut(s)	256, 268
HgaI	GACGC	1 cut(s)	387
HhaI	GCGC	2 cut(s)	289, 499
Hin1II	CATG	3 cut(s)	104, 212, 229
Hin6I	GCGC	2 cut(s)	287, 497
HinP1I	GCGC	2 cut(s)	287, 497
HincII	GTYRAC	1 cut(s)	223
HindII	GTYRAC	1 cut(s)	223
HinfI	GANTC	1 cut(s)	203
HphI	GGTGA	1 cut(s)	404
Hpy166II	GTNNAC	1 cut(s)	223
Hpy188I	TCNGA	4 cut(s)	314, 363, 435, 456
Hpy8I	GTNNAC	1 cut(s)	223
Hpy99I	CGWCG	2 cut(s)	381, 409
HpyAV	CCTTC	2 cut(s)	60, 269
HpyCH4V	TGCA	5 cut(s)	4, 64, 100, 326, 466
HpyF10VI	GCNNNNNNNGC	4 cut(s)	106, 127, 253, 328
HpyF3I	CTNAG	3 cut(s)	110, 434, 455
Hsp92II	CATG	3 cut(s)	104, 212, 229
HspAI	GCGC	2 cut(s)	287, 497
Kzo9I	GATC	6 cut(s)	34, 309, 316, 358, 430, 451
LmnI	GCTCC	2 cut(s)	363, 371
LpnPI	CCDG	2 cut(s)	404, 452
Lsp1109I	GCAGC	1 cut(s)	142
LweI	GCATC	3 cut(s)	87, 175, 410
MaeI	CTAG	1 cut(s)	290
MaeIII	GTNAC	3 cut(s)	23, 155, 301
MalI	GATC	6 cut(s)	36, 311, 318, 360, 432, 453
MboI	GATC	6 cut(s)	34, 309, 316, 358, 430, 451
MboII	GAAGA	3 cut(s)	82, 407, 421
MfeI	CAATTG	1 cut(s)	65
MflI	RGATCY	2 cut(s)	430, 451
MhlI	GDGCHC	1 cut(s)	368
MlsI	TGGCCA	1 cut(s)	268
MluCI	AATT	2 cut(s)	65, 142
MluNI	TGGCCA	1 cut(s)	268
MlyI	GAGTC	1 cut(s)	212
MnlI	CCTC	4 cut(s)	267, 484, 487, 490
Mox20I	TGGCCA	1 cut(s)	268
Mph1103I	ATGCAT	1 cut(s)	102
MscI	TGGCCA	1 cut(s)	268
Msp20I	TGGCCA	1 cut(s)	268
MunI	CAATTG	1 cut(s)	65
MvnI	CGCG	4 cut(s)	215, 381, 387, 499
MwoI	GCNNNNNNNGC	4 cut(s)	106, 127, 253, 328
NdeII	GATC	6 cut(s)	34, 309, 316, 358, 430, 451
NlaIII	CATG	3 cut(s)	104, 212, 229
NmuCI	GTSAC	2 cut(s)	155, 301
NsiI	ATGCAT	1 cut(s)	102
NspI	RCATGY	1 cut(s)	229
PciI	ACATGT	1 cut(s)	225
PkrI	GCNGC	3 cut(s)	132, 214, 286
PleI	GAGTC	1 cut(s)	211
PpsI	GAGTC	1 cut(s)	211
PscI	ACATGT	1 cut(s)	225
Psp124BI	GAGCTC	1 cut(s)	368
PspFI	CCCAGC	1 cut(s)	418
PsuI	RGATCY	2 cut(s)	430, 451
SacI	GAGCTC	1 cut(s)	368
SatI	GCNGC	3 cut(s)	131, 213, 285
Sau3AI	GATC	6 cut(s)	34, 309, 316, 358, 430, 451
SchI	GAGTC	1 cut(s)	212
SduI	GDGCHC	1 cut(s)	368
SetI	ASST	6 cut(s)	52, 63, 340, 368, 476, 482
SfaNI	GCATC	3 cut(s)	87, 175, 410
Sse9I	AATT	2 cut(s)	65, 142
SsiI	CCGC	5 cut(s)	54, 213, 284, 385, 491
SspMI	CTAG	1 cut(s)	290
SstI	GAGCTC	1 cut(s)	368
TaqI	TCGA	3 cut(s)	238, 376, 404
TasI	AATT	2 cut(s)	65, 142
TauI	GCSGC	2 cut(s)	215, 287
TscAI	CASTG	2 cut(s)	376, 492
TseFI	GTSAC	2 cut(s)	155, 301
TseI	GCWGC	1 cut(s)	130
Tsp45I	GTSAC	2 cut(s)	155, 301
TspRI	CASTG	2 cut(s)	376, 492
XapI	RAATTY	1 cut(s)	142
XceI	RCATGY	1 cut(s)	229
XspI	CTAG	1 cut(s)	290
Zsp2I	ATGCAT	1 cut(s)	102

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.