Basic Information

Type: gene

Biological Identity

Species

rosa_roxburghii

Chromosome

GWHEROQ00000006

Orthogroup ID

OG0000314

Physical Location & Seq

Genomic Coordinates Forward (+)

27958721 .. 27961744

Gene Structure 3024 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rroxscaffold_6G00405520.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 501 bp

ATGAACGAGAATGCTCGAAAGCTAAAGAGTAAAGGGAGCAGCGTGCTAGAGAAGCCGAATAGCCCGATCGAGAGCTTACCCGGTGGAGGAAGCGTAAAGACCAAGAGTGGAGAAAACAATATCAGCATATCCCTGGACCGTATAGCGACCCGGCACAAGATTGCATCGGAGTTCATGACCTTGCACAAGGAAGATTCCGTCTTGGCTACTCAAGTGAGTTCGCATCAAGACAAATTGGAAAGTCAAGAATCTGCACGCAAAGAGGAATACAAGTCCTTTGAAGCTCTTGATATGGAGAATTTAGACCAACAAGCGGTCAAATGTAAAAGCCAATATGTGGCTAATTCTGAAGATATCATGTTCCATGACATGGTAGTTGGCGACAAAGCCAATCTTGGGACATTATTATCTCCAAAATTGCAATTGAAGATCATGCTTCGTCAACCAAAAAAGATACTTGGGGGCCAATGTTACTCCTCCTTCGAGCCAAATTTCTCCTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003676 GO:0003723 GO:0003824 GO:0004652 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005829 GO:0006139 GO:0006276 GO:0006378 GO:0006396 GO:0006397 GO:0006725 GO:0006807 GO:0008150 GO:0008152 GO:0009451 GO:0009987 GO:0010467 GO:0016070 GO:0016071 GO:0016740 GO:0016772 GO:0016779 GO:0031123 GO:0031124 GO:0034641 GO:0043170 GO:0043412 GO:0043631 GO:0044237 GO:0044238 GO:0044424 GO:0044444 GO:0044464 GO:0046483 GO:0070566 GO:0071704 GO:0090304 GO:0097159 GO:1901360 GO:1901363

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

PolyA_pol PolyA_pol_RNAbd

Protein Analysis

166

Amino Acids

18.45

Weight (kDa)

7.75

Isoelectric Point (pI)

44.97

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0000314)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_1g02272 FvH4_1g22661 FvH4_2g10242 FvH4_2g34051 FvH4_3g19221 FvH4_3g29651 FvH4_3g30891 FvH4_4g11061 FvH4_5g09250 FvH4_5g15302 FvH4_5g15303 FvH4_5g15304 FvH4_5g28521 FvH4_6g23591 FvH4_7g05710 FvH4_7g19520
pyrus_communis	pycom07g06330
rosa_chinensis	RchiOBHm_Chr5g0027301 RchiOBHm_Chr6g0251451 RchiOBHm_Chr6g0274861
rosa_laevigata	RLG00000007850
rosa_multiflora	Rmu_co8230721.1_g000001 Rmu_sc0000271.1_g000027 Rmu_sc0000303.1_g000024 Rmu_sc0000368.1_g000024 Rmu_sc0000621.1_g000037 Rmu_sc0000693.1_g000081 Rmu_sc0001229.1_g000006 Rmu_sc0001373.1_g000003 Rmu_sc0001459.1_g000001 Rmu_sc0001744.1_g000002 Rmu_sc0001909.1_g000002 Rmu_sc0002053.1_g000012 Rmu_sc0002060.1_g000015 Rmu_sc0002119.1_g000036 Rmu_sc0002177.1_g000007 Rmu_sc0002822.1_g000024 Rmu_sc0002965.1_g000015 Rmu_sc0003363.1_g000051 Rmu_sc0003500.1_g000013 Rmu_sc0004191.1_g000020 Rmu_sc0004904.1_g000032 Rmu_sc0005325.1_g000008 Rmu_sc0005947.1_g000040 Rmu_sc0006475.1_g000001 Rmu_sc0006522.1_g000019 Rmu_sc0007102.1_g000005 Rmu_sc0007810.1_g000003 Rmu_sc0008339.1_g000025 Rmu_sc0008698.1_g000004 Rmu_sc0009313.1_g000006 Rmu_sc0009850.1_g000006 Rmu_sc0010598.1_g000003 Rmu_sc0011162.1_g000002 Rmu_sc0011824.1_g000004 Rmu_sc0011900.1_g000010 Rmu_sc0012291.1_g000006 Rmu_sc0012619.1_g000003 Rmu_sc0014679.1_g000001 Rmu_sc0019053.1_g000001 Rmu_sc0021462.1_g000003 Rmu_sc0024172.1_g000001 Rmu_sc0024173.1_g000001 Rmu_ssc0000052.1_g000016 Rmu_ssc0000392.1_g000010 Rmu_ssc0000421.1_g000062 Rmu_ssc0000479.1_g000006
rosa_roxburghii	Rroxscaffold_153G00436600 Rroxscaffold_1G00008580 Rroxscaffold_1G00016770 Rroxscaffold_1G00029550 Rroxscaffold_1G00036450 Rroxscaffold_1G00040410 Rroxscaffold_1G00047110 Rroxscaffold_1G00060570 Rroxscaffold_2G00081500 Rroxscaffold_2G00081510 Rroxscaffold_2G00086080 Rroxscaffold_2G00099620 Rroxscaffold_2G00099630 Rroxscaffold_2G00099640 Rroxscaffold_2G00109170 Rroxscaffold_2G00127750 Rroxscaffold_2G00128590 Rroxscaffold_2G00130780 Rroxscaffold_2G00131040 Rroxscaffold_2G00143160 Rroxscaffold_3G00229280 Rroxscaffold_3G00229290 Rroxscaffold_3G00229970 Rroxscaffold_3G00242860 Rroxscaffold_3G00242890 Rroxscaffold_3G00242900 Rroxscaffold_3G00248200 Rroxscaffold_4G00284550 Rroxscaffold_4G00288780 Rroxscaffold_4G00298620 Rroxscaffold_4G00298630 Rroxscaffold_4G00312420 Rroxscaffold_4G00320310 Rroxscaffold_4G00322220 Rroxscaffold_4G00323600 Rroxscaffold_4G00331830 Rroxscaffold_4G00332010 Rroxscaffold_4G00332020 Rroxscaffold_5G00344470 Rroxscaffold_5G00345310 Rroxscaffold_5G00356120 Rroxscaffold_5G00368700 Rroxscaffold_5G00379820 Rroxscaffold_5G00382480 Rroxscaffold_6G00395080 Rroxscaffold_6G00405520 Rroxscaffold_6G00428210 Rroxscaffold_7G00193460
rosa_samantha	Rh7CG413200 Rh7DG284900

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB7I	CCANNNNNTGG	2 cut(s)	337, 370
AciI	CCGC	1 cut(s)	314
AcsI	RAATTY	2 cut(s)	298, 490
AcuI	CTGAAG	1 cut(s)	369
AfiI	CCNNNNNNNGG	5 cut(s)	86, 313, 337, 370, 396
AgsI	TTSAA	2 cut(s)	281, 427
AjnI	CCWGG	1 cut(s)	132
AluBI	AGCT	3 cut(s)	22, 75, 284
AluI	AGCT	3 cut(s)	22, 75, 284
AoxI	GGCC	1 cut(s)	463
ApeKI	GCWGC	1 cut(s)	39
ApoI	RAATTY	2 cut(s)	298, 490
AspS9I	GGNCC	2 cut(s)	136, 463
AsuC2I	CCSGG	2 cut(s)	81, 151
AvaII	GGWCC	1 cut(s)	136
BbvI	GCAGC	1 cut(s)	51
BciT130I	CCWGG	1 cut(s)	134
BcnI	CCSGG	2 cut(s)	81, 151
BfaI	CTAG	1 cut(s)	47
BisI	GCNGC	1 cut(s)	40
BlsI	GCNGC	1 cut(s)	41
Bme1390I	CCNGG	3 cut(s)	81, 134, 151
Bme18I	GGWCC	1 cut(s)	136
BmgT120I	GGNCC	2 cut(s)	136, 463
BmiI	GGNNCC	1 cut(s)	464
BmrFI	CCNGG	3 cut(s)	81, 134, 151
BmsI	GCATC	2 cut(s)	173, 232
BpuEI	CTTGAG	1 cut(s)	195
BpuMI	CCSGG	2 cut(s)	81, 151
BsaJI	CCNNGG	1 cut(s)	132
BsaXI	ACNNNNNCTCC	2 cut(s)	78, 108
Bsc4I	CCNNNNNNNGG	5 cut(s)	86, 313, 337, 370, 396
BseBI	CCWGG	1 cut(s)	134
BseDI	CCNNGG	1 cut(s)	132
BseLI	CCNNNNNNNGG	5 cut(s)	86, 313, 337, 370, 396
BseRI	GAGGAG	1 cut(s)	466
BseXI	GCAGC	1 cut(s)	51
BsgI	GTGCAG	1 cut(s)	237
Bsh1285I	CGRYCG	1 cut(s)	69
BshFI	GGCC	1 cut(s)	465
BsiEI	CGRYCG	1 cut(s)	69
BsiSI	CCGG	2 cut(s)	81, 151
BslFI	GGGAC	1 cut(s)	412
BslI	CCNNNNNNNGG	5 cut(s)	86, 313, 337, 370, 396
BsmFI	GGGAC	1 cut(s)	412
BsmI	GAATGC	1 cut(s)	16
BsnI	GGCC	1 cut(s)	465
Bsp143I	GATC	2 cut(s)	66, 429
BspACI	CCGC	1 cut(s)	314
BspANI	GGCC	1 cut(s)	465
BspHI	TCATGA	1 cut(s)	174
BspLI	GGNNCC	1 cut(s)	464
BssECI	CCNNGG	1 cut(s)	132
BssMI	GATC	2 cut(s)	66, 429
Bst2UI	CCWGG	1 cut(s)	134
Bst4CI	ACNGT	1 cut(s)	140
BstC8I	GCNNGC	2 cut(s)	44, 256
BstKTI	GATC	2 cut(s)	69, 432
BstMBI	GATC	2 cut(s)	66, 429
BstMCI	CGRYCG	1 cut(s)	69
BstMWI	GCNNNNNNNGC	1 cut(s)	52
BstNI	CCWGG	1 cut(s)	134
BstSCI	CCNGG	3 cut(s)	79, 132, 149
BstV1I	GCAGC	1 cut(s)	51
BsuRI	GGCC	1 cut(s)	465
Cac8I	GCNNGC	2 cut(s)	44, 256
CciI	TCATGA	1 cut(s)	174
Cfr13I	GGNCC	2 cut(s)	136, 463
CviAII	CATG	5 cut(s)	175, 358, 365, 370, 433
DpnI	GATC	2 cut(s)	68, 431
DpnII	GATC	2 cut(s)	66, 429
Eco32I	GATATC	1 cut(s)	355
Eco47I	GGWCC	1 cut(s)	136
Eco57I	CTGAAG	1 cut(s)	369
EcoRII	CCWGG	1 cut(s)	132
EcoRV	GATATC	1 cut(s)	355
FaeI	CATG	5 cut(s)	178, 361, 368, 373, 436
FaiI	YATR	9 cut(s)	128, 143, 176, 293, 336, 359, 366, 371, 434
FalI	AAGNNNNNCTT	2 cut(s)	378, 410
FaqI	GGGAC	1 cut(s)	412
FatI	CATG	5 cut(s)	174, 357, 364, 369, 432
Fnu4HI	GCNGC	1 cut(s)	40
Fsp4HI	GCNGC	1 cut(s)	40
FspBI	CTAG	1 cut(s)	47
GluI	GCNGC	1 cut(s)	40
HaeIII	GGCC	1 cut(s)	465
HapII	CCGG	2 cut(s)	81, 151
Hin1II	CATG	5 cut(s)	178, 361, 368, 373, 436
HincII	GTYRAC	1 cut(s)	443
HindII	GTYRAC	1 cut(s)	443
HinfI	GANTC	2 cut(s)	194, 248
HpaII	CCGG	2 cut(s)	81, 151
Hpy166II	GTNNAC	1 cut(s)	443
Hpy188I	TCNGA	2 cut(s)	169, 349
Hpy188III	TCNNGA	5 cut(s)	70, 175, 227, 245, 287
Hpy8I	GTNNAC	1 cut(s)	443
HpyAV	CCTTC	1 cut(s)	490
HpyCH4III	ACNGT	1 cut(s)	140
HpyCH4V	TGCA	4 cut(s)	164, 184, 254, 421
HpyF10VI	GCNNNNNNNGC	1 cut(s)	52
Hsp92II	CATG	5 cut(s)	178, 361, 368, 373, 436
Kzo9I	GATC	2 cut(s)	66, 429
LmnI	GCTCC	1 cut(s)	36
LpnPI	CCDG	4 cut(s)	94, 119, 146, 164
Lsp1109I	GCAGC	1 cut(s)	51
LweI	GCATC	2 cut(s)	173, 232
MaeI	CTAG	1 cut(s)	47
MaeIII	GTNAC	1 cut(s)	470
MalI	GATC	2 cut(s)	68, 431
MboI	GATC	2 cut(s)	66, 429
MboII	GAAGA	3 cut(s)	203, 362, 439
MfeI	CAATTG	1 cut(s)	422
MluCI	AATT	6 cut(s)	233, 298, 343, 416, 422, 490
MnlI	CCTC	3 cut(s)	80, 256, 487
MspI	CCGG	2 cut(s)	81, 151
MspR9I	CCNGG	3 cut(s)	81, 134, 151
MunI	CAATTG	1 cut(s)	422
Mva1269I	GAATGC	1 cut(s)	16
MvaI	CCWGG	1 cut(s)	134
MwoI	GCNNNNNNNGC	1 cut(s)	52
NciI	CCSGG	2 cut(s)	81, 151
NdeII	GATC	2 cut(s)	66, 429
NlaIII	CATG	5 cut(s)	178, 361, 368, 373, 436
NlaIV	GGNNCC	1 cut(s)	464
PagI	TCATGA	1 cut(s)	174
PctI	GAATGC	1 cut(s)	16
PfeI	GAWTC	2 cut(s)	194, 248
PflMI	CCANNNNNTGG	2 cut(s)	337, 370
PkrI	GCNGC	1 cut(s)	41
Ple19I	CGATCG	1 cut(s)	69
Psp6I	CCWGG	1 cut(s)	132
PspGI	CCWGG	1 cut(s)	132
PspN4I	GGNNCC	1 cut(s)	464
PspPI	GGNCC	2 cut(s)	136, 463
PvuI	CGATCG	1 cut(s)	69
SatI	GCNGC	1 cut(s)	40
Sau3AI	GATC	2 cut(s)	66, 429
Sau96I	GGNCC	2 cut(s)	136, 463
ScrFI	CCNGG	3 cut(s)	81, 134, 151
SetI	ASST	4 cut(s)	24, 77, 182, 286
SfaNI	GCATC	2 cut(s)	173, 232
SinI	GGWCC	1 cut(s)	136
SmlI	CTYRAG	1 cut(s)	210
SmoI	CTYRAG	1 cut(s)	210
Sse9I	AATT	6 cut(s)	233, 298, 343, 416, 422, 490
SsiI	CCGC	1 cut(s)	314
SspMI	CTAG	1 cut(s)	47
StyD4I	CCNGG	3 cut(s)	79, 132, 149
TaaI	ACNGT	1 cut(s)	140
TaqI	TCGA	3 cut(s)	16, 69, 483
TasI	AATT	6 cut(s)	233, 298, 343, 416, 422, 490
TfiI	GAWTC	2 cut(s)	194, 248
TseI	GCWGC	1 cut(s)	39
TspDTI	ATGAA	2 cut(s)	17, 163
TspGWI	ACGGA	1 cut(s)	187
Van91I	CCANNNNNTGG	2 cut(s)	337, 370
VpaK11BI	GGWCC	1 cut(s)	136
XapI	RAATTY	2 cut(s)	298, 490
XspI	CTAG	1 cut(s)	47

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.