Rmu_sc0009313.1_g000006

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_multiflora
Rmu_sc0009313.1
OG0000314
Physical Location & Seq
Reverse (-)
17914 .. 18984
1071 bp
Loading structure...
UTR
Exon/CDS
Intron
Rmu_sc0009313.1_g000006.1.cds

Sequence Viewer

Length: 1071 bp
atggccaatgttgccacaaatggcgacactacgacaagagaggctttcgttgagaagcctattccagagggagcgaccttcgaggaaaaacttgcgatcatcatggaaaatatcgagaaccatcgcaaaaagatggacgctgatttttccagggaaaccgccaaggcgaatcggctcacacgcgaactggacgagaatgctcagaaagctaaagagcaaagggagcggcgcgatcgagaagctgaacaacgcaatcgagagcttacccagcgggggaaacaggaagaccaagagtgggaaagacaatatcagcatatcctggattgtatagcgaccttgcgcaaggaaggtcccagcttgactactcaagtcggttcacagctaggcgaattggaaagccaaaaatcttctagcgaagaggttgtttctgaggttgaattgcctacaggtggaaataaacctaaatgcctcattgatgagtcacggccttacatagaggctttgcatggagaagatggtcaacaagattgttcctctgacaatataattgtctcagaacaaatatatgatttttccactgatcaagccaaatacgtggctattgatcagatgcatggggggcaagatgaagcccaggttcacccccttgatagccagaagcagctgtatgatcaatttaattatggttatgctactggacgtcatcatgaccaaggtaatcaaagccacaatcaacttaattatgaattaagttgttatatggctgctggacgtcctcatcatgcagaaggtcaagagtgtggtccccttaattatcaattaaggcatgggccacttgattatcaattatgttttggtcttgagaagccaatctgtggctttattaatcaattcaatttgaagatcttcatatatgtttcaaggccagtcagtggctttgaaatttgtaaagaaggatttggtgaccccaagtccagtcttgacacagagccaatctatgatgaatatgatgataattacaatttaattattggttccaaaaatcatatgcaggagtacaagtccttttaa
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

356

Amino Acids

40.76

Weight (kDa)

4.91

Isoelectric Point (pI)

48.12

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0000314)

Species Orthologous Gene IDs
fragaria_vesca FvH4_1g02272 FvH4_1g22661 FvH4_2g10242 FvH4_2g34051 FvH4_3g19221 FvH4_3g29651 FvH4_3g30891 FvH4_4g11061 FvH4_5g09250 FvH4_5g15302 FvH4_5g15303 FvH4_5g15304 FvH4_5g28521 FvH4_6g23591 FvH4_7g05710 FvH4_7g19520
pyrus_communis pycom07g06330
rosa_chinensis RchiOBHm_Chr5g0027301 RchiOBHm_Chr6g0251451 RchiOBHm_Chr6g0274861
rosa_laevigata RLG00000007850
rosa_multiflora Rmu_co8230721.1_g000001 Rmu_sc0000271.1_g000027 Rmu_sc0000303.1_g000024 Rmu_sc0000368.1_g000024 Rmu_sc0000621.1_g000037 Rmu_sc0000693.1_g000081 Rmu_sc0001229.1_g000006 Rmu_sc0001373.1_g000003 Rmu_sc0001459.1_g000001 Rmu_sc0001744.1_g000002 Rmu_sc0001909.1_g000002 Rmu_sc0002053.1_g000012 Rmu_sc0002060.1_g000015 Rmu_sc0002119.1_g000036 Rmu_sc0002177.1_g000007 Rmu_sc0002822.1_g000024 Rmu_sc0002965.1_g000015 Rmu_sc0003363.1_g000051 Rmu_sc0003500.1_g000013 Rmu_sc0004191.1_g000020 Rmu_sc0004904.1_g000032 Rmu_sc0005325.1_g000008 Rmu_sc0005947.1_g000040 Rmu_sc0006475.1_g000001 Rmu_sc0006522.1_g000019 Rmu_sc0007102.1_g000005 Rmu_sc0007810.1_g000003 Rmu_sc0008339.1_g000025 Rmu_sc0008698.1_g000004 Rmu_sc0009313.1_g000006 Rmu_sc0009850.1_g000006 Rmu_sc0010598.1_g000003 Rmu_sc0011162.1_g000002 Rmu_sc0011824.1_g000004 Rmu_sc0011900.1_g000010 Rmu_sc0012291.1_g000006 Rmu_sc0012619.1_g000003 Rmu_sc0014679.1_g000001 Rmu_sc0019053.1_g000001 Rmu_sc0021462.1_g000003 Rmu_sc0024172.1_g000001 Rmu_sc0024173.1_g000001 Rmu_ssc0000052.1_g000016 Rmu_ssc0000392.1_g000010 Rmu_ssc0000421.1_g000062 Rmu_ssc0000479.1_g000006
rosa_roxburghii Rroxscaffold_153G00436600 Rroxscaffold_1G00008580 Rroxscaffold_1G00016770 Rroxscaffold_1G00029550 Rroxscaffold_1G00036450 Rroxscaffold_1G00040410 Rroxscaffold_1G00047110 Rroxscaffold_1G00060570 Rroxscaffold_2G00081500 Rroxscaffold_2G00081510 Rroxscaffold_2G00086080 Rroxscaffold_2G00099620 Rroxscaffold_2G00099630 Rroxscaffold_2G00099640 Rroxscaffold_2G00109170 Rroxscaffold_2G00127750 Rroxscaffold_2G00128590 Rroxscaffold_2G00130780 Rroxscaffold_2G00131040 Rroxscaffold_2G00143160 Rroxscaffold_3G00229280 Rroxscaffold_3G00229290 Rroxscaffold_3G00229970 Rroxscaffold_3G00242860 Rroxscaffold_3G00242890 Rroxscaffold_3G00242900 Rroxscaffold_3G00248200 Rroxscaffold_4G00284550 Rroxscaffold_4G00288780 Rroxscaffold_4G00298620 Rroxscaffold_4G00298630 Rroxscaffold_4G00312420 Rroxscaffold_4G00320310 Rroxscaffold_4G00322220 Rroxscaffold_4G00323600 Rroxscaffold_4G00331830 Rroxscaffold_4G00332010 Rroxscaffold_4G00332020 Rroxscaffold_5G00344470 Rroxscaffold_5G00345310 Rroxscaffold_5G00356120 Rroxscaffold_5G00368700 Rroxscaffold_5G00379820 Rroxscaffold_5G00382480 Rroxscaffold_6G00395080 Rroxscaffold_6G00405520 Rroxscaffold_6G00428210 Rroxscaffold_7G00193460
rosa_samantha Rh7CG413200 Rh7DG284900

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AatII GACGTC 2 cut(s) 703, 775
Acc16I TGCGCA 1 cut(s) 341
AccB7I CCANNNNNTGG 2 cut(s) 875, 932
AccBSI CCGCTC 1 cut(s) 226
AccII CGCG 2 cut(s) 183, 231
AciI CCGC 3 cut(s) 159, 226, 271
AcoI YGGCCR 1 cut(s) 3
AcsI RAATTY 1 cut(s) 942
AcyI GRCGYC 2 cut(s) 700, 772
AfaI GTAC 1 cut(s) 1058
AfiI CCNNNNNNNGG 5 cut(s) 273, 295, 449, 875, 932
AgsI TTSAA 5 cut(s) 437, 895, 901, 921, 941
AhdI GACNNNNNGTC 1 cut(s) 970
AjnI CCWGG 3 cut(s) 149, 318, 633
AluBI AGCT 6 cut(s) 209, 242, 262, 357, 382, 664
AluI AGCT 6 cut(s) 209, 242, 262, 357, 382, 664
Alw26I GTCTC 1 cut(s) 556
AoxI GGCC 4 cut(s) 3, 485, 830, 923
ApeKI GCWGC 2 cut(s) 661, 764
ApoI RAATTY 1 cut(s) 942
AseI ATTAAT 1 cut(s) 885
Asp700I GAANNNNTTC 1 cut(s) 905
AspLEI GCGC 2 cut(s) 231, 342
AspS9I GGNCC 3 cut(s) 350, 803, 830
AsuHPI GGTGA 2 cut(s) 632, 974
AvaII GGWCC 2 cut(s) 350, 803
BalI TGGCCA 1 cut(s) 5
BbsI GAAGAC 1 cut(s) 291
BbvI GCAGC 2 cut(s) 673, 751
BccI CCATC 3 cut(s) 127, 129, 509
BceAI ACGGC 1 cut(s) 500
BciT130I CCWGG 3 cut(s) 151, 320, 635
BclI TGATCA 3 cut(s) 580, 604, 670
BcoDI GTCTC 1 cut(s) 556
BfaI CTAG 2 cut(s) 383, 411
BfmI CTRYAG 1 cut(s) 444
BglII AGATCT 1 cut(s) 903
BisI GCNGC 3 cut(s) 227, 662, 765
BlsI GCNGC 3 cut(s) 228, 663, 766
Bme1390I CCNGG 3 cut(s) 151, 320, 635
Bme18I GGWCC 2 cut(s) 350, 803
BmeRI GACNNNNNGTC 1 cut(s) 970
BmgT120I GGNCC 3 cut(s) 350, 803, 830
BmiI GGNNCC 3 cut(s) 352, 805, 1036
BmrFI CCNGG 3 cut(s) 151, 320, 635
BmsI GCATC 1 cut(s) 600
BpiI GAAGAC 1 cut(s) 291
BpuEI CTTGAG 2 cut(s) 351, 881
BsaAI YACGTR 1 cut(s) 595
BsaHI GRCGYC 2 cut(s) 700, 772
BsaJI CCNNGG 4 cut(s) 150, 162, 633, 712
BsaXI ACNNNNNCTCC 1 cut(s) 1046
Bsc4I CCNNNNNNNGG 5 cut(s) 273, 295, 449, 875, 932
Bse1I ACTGG 4 cut(s) 192, 700, 926, 975
BseBI CCWGG 3 cut(s) 151, 320, 635
BseDI CCNNGG 4 cut(s) 150, 162, 633, 712
BseLI CCNNNNNNNGG 5 cut(s) 273, 295, 449, 875, 932
BseMII CTCAG 3 cut(s) 215, 420, 567
BseNI ACTGG 4 cut(s) 192, 700, 926, 975
BseXI GCAGC 2 cut(s) 673, 751
BseYI CCCAGC 2 cut(s) 267, 353
Bsh1236I CGCG 2 cut(s) 183, 231
Bsh1285I CGRYCG 1 cut(s) 235
BshFI GGCC 4 cut(s) 5, 487, 832, 925
BsiEI CGRYCG 1 cut(s) 235
BslFI GGGAC 2 cut(s) 336, 789
BslI CCNNNNNNNGG 5 cut(s) 273, 295, 449, 875, 932
BsmAI GTCTC 1 cut(s) 556
BsmFI GGGAC 2 cut(s) 336, 789
BsmI GAATGC 1 cut(s) 202
BsnI GGCC 4 cut(s) 5, 487, 832, 925
Bsp143I GATC 6 cut(s) 96, 232, 580, 604, 670, 903
BspACI CCGC 3 cut(s) 159, 226, 271
BspANI GGCC 4 cut(s) 5, 487, 832, 925
BspCNI CTCAG 3 cut(s) 214, 421, 566
BspFNI CGCG 2 cut(s) 183, 231
BspHI TCATGA 1 cut(s) 706
BspLI GGNNCC 3 cut(s) 352, 805, 1036
BsrBI CCGCTC 1 cut(s) 226
BsrI ACTGG 4 cut(s) 192, 700, 926, 975
BssECI CCNNGG 4 cut(s) 150, 162, 633, 712
BssMI GATC 6 cut(s) 96, 232, 580, 604, 670, 903
BssNI GRCGYC 2 cut(s) 700, 772
BssT1I CCWWGG 2 cut(s) 162, 712
Bst2UI CCWGG 3 cut(s) 151, 320, 635
Bst6I CTCTTC 1 cut(s) 411
BstACI GRCGYC 2 cut(s) 700, 772
BstBAI YACGTR 1 cut(s) 595
BstDEI CTNAG 3 cut(s) 201, 429, 553
BstEII GGTNACC 1 cut(s) 962
BstFNI CGCG 2 cut(s) 183, 231
BstHHI GCGC 2 cut(s) 231, 342
BstKTI GATC 6 cut(s) 99, 235, 583, 607, 673, 906
BstMAI GTCTC 1 cut(s) 556
BstMBI GATC 6 cut(s) 96, 232, 580, 604, 670, 903
BstMCI CGRYCG 1 cut(s) 235
BstMWI GCNNNNNNNGC 5 cut(s) 11, 206, 223, 268, 619
BstNI CCWGG 3 cut(s) 151, 320, 635
BstPI GGTNACC 1 cut(s) 962
BstSCI CCNGG 3 cut(s) 149, 318, 633
BstSFI CTRYAG 1 cut(s) 444
BstUI CGCG 2 cut(s) 183, 231
BstV1I GCAGC 2 cut(s) 673, 751
BstV2I GAAGAC 1 cut(s) 291
BstX2I RGATCY 1 cut(s) 903
BstXI CCANNNNNNTGG 1 cut(s) 595
BstYI RGATCY 1 cut(s) 903
BsuRI GGCC 4 cut(s) 5, 487, 832, 925
BtgZI GCGATG 1 cut(s) 107
BtsIMutI CAGTG 2 cut(s) 576, 937
CciI TCATGA 1 cut(s) 706
CfoI GCGC 2 cut(s) 231, 342
Cfr13I GGNCC 3 cut(s) 350, 803, 830
CseI GACGC 1 cut(s) 146
Csp6I GTAC 1 cut(s) 1057
CviAII CATG 6 cut(s) 103, 506, 614, 707, 782, 827
CviQI GTAC 1 cut(s) 1057
DdeI CTNAG 3 cut(s) 201, 429, 553
DpnI GATC 6 cut(s) 98, 234, 582, 606, 672, 905
DpnII GATC 6 cut(s) 96, 232, 580, 604, 670, 903
DriI GACNNNNNGTC 1 cut(s) 970
EaeI YGGCCR 1 cut(s) 3
Eam1104I CTCTTC 1 cut(s) 411
Eam1105I GACNNNNNGTC 1 cut(s) 970
EarI CTCTTC 1 cut(s) 411
Eco130I CCWWGG 2 cut(s) 162, 712
Eco47I GGWCC 2 cut(s) 350, 803
Eco91I GGTNACC 1 cut(s) 962
EcoO109I RGGNCCY 1 cut(s) 350
EcoO65I GGTNACC 1 cut(s) 962
EcoRII CCWGG 3 cut(s) 149, 318, 633
EcoT14I CCWWGG 2 cut(s) 162, 712
EcoT22I ATGCAT 1 cut(s) 615
ErhI CCWWGG 2 cut(s) 162, 712
FaeI CATG 6 cut(s) 106, 509, 617, 710, 785, 830
FalI AAGNNNNNCTT 2 cut(s) 28, 60
FaqI GGGAC 2 cut(s) 336, 789
FatI CATG 6 cut(s) 102, 505, 613, 706, 781, 826
FauI CCCGC 1 cut(s) 264
FauNDI CATATG 1 cut(s) 1047
FbaI TGATCA 3 cut(s) 580, 604, 670
Fnu4HI GCNGC 3 cut(s) 227, 662, 765
Fsp4HI GCNGC 3 cut(s) 227, 662, 765
FspBI CTAG 2 cut(s) 383, 411
FspI TGCGCA 1 cut(s) 341
GlaI GCGC 2 cut(s) 230, 341
GluI GCNGC 3 cut(s) 227, 662, 765
GsaI CCCAGC 2 cut(s) 271, 357
HaeIII GGCC 4 cut(s) 5, 487, 832, 925
HgaI GACGC 1 cut(s) 146
HhaI GCGC 2 cut(s) 231, 342
Hin1I GRCGYC 2 cut(s) 700, 772
Hin1II CATG 6 cut(s) 106, 509, 617, 710, 785, 830
Hin6I GCGC 2 cut(s) 229, 340
HinP1I GCGC 2 cut(s) 229, 340
HincII GTYRAC 1 cut(s) 521
HindII GTYRAC 1 cut(s) 521
HinfI GANTC 2 cut(s) 169, 479
HphI GGTGA 2 cut(s) 632, 974
Hpy166II GTNNAC 3 cut(s) 377, 521, 640
Hpy188I TCNGA 5 cut(s) 204, 430, 538, 556, 609
Hpy188III TCNNGA 8 cut(s) 65, 115, 236, 257, 707, 794, 860, 980
Hpy8I GTNNAC 3 cut(s) 377, 521, 640
HpyAV CCTTC 4 cut(s) 88, 341, 782, 947
HpyCH4IV ACGT 3 cut(s) 594, 700, 772
HpyCH4V TGCA 4 cut(s) 505, 613, 785, 1051
HpyF10VI GCNNNNNNNGC 5 cut(s) 11, 206, 223, 268, 619
HpyF3I CTNAG 3 cut(s) 201, 429, 553
HpySE526I ACGT 3 cut(s) 594, 700, 772
Hsp92I GRCGYC 2 cut(s) 700, 772
Hsp92II CATG 6 cut(s) 106, 509, 617, 710, 785, 830
HspAI GCGC 2 cut(s) 229, 340
Ksp22I TGATCA 3 cut(s) 580, 604, 670
Kzo9I GATC 6 cut(s) 96, 232, 580, 604, 670, 903
LmnI GCTCC 2 cut(s) 71, 223
Lsp1109I GCAGC 2 cut(s) 673, 751
LweI GCATC 1 cut(s) 600
MaeI CTAG 2 cut(s) 383, 411
MaeII ACGT 3 cut(s) 594, 700, 772
MaeIII GTNAC 2 cut(s) 480, 962
MalI GATC 6 cut(s) 98, 234, 582, 606, 672, 905
MbiI CCGCTC 1 cut(s) 226
MboI GATC 6 cut(s) 96, 232, 580, 604, 670, 903
MboII GAAGA 6 cut(s) 296, 399, 428, 524, 898, 913
MflI RGATCY 1 cut(s) 903
MlsI TGGCCA 1 cut(s) 5
MluNI TGGCCA 1 cut(s) 5
MlyI GAGTC 1 cut(s) 488
MnlI CCTC 9 cut(s) 34, 61, 76, 412, 424, 479, 490, 544, 786
Mox20I TGGCCA 1 cut(s) 5
Mph1103I ATGCAT 1 cut(s) 615
MroXI GAANNNNTTC 1 cut(s) 905
MscI TGGCCA 1 cut(s) 5
MseI TTAA 8 cut(s) 678, 738, 749, 810, 821, 885, 1025, 1069
Msp20I TGGCCA 1 cut(s) 5
MspA1I CMGCKG 2 cut(s) 271, 664
MspR9I CCNGG 3 cut(s) 151, 320, 635
Mva1269I GAATGC 1 cut(s) 202
MvaI CCWGG 3 cut(s) 151, 320, 635
MvnI CGCG 2 cut(s) 183, 231
MwoI GCNNNNNNNGC 5 cut(s) 11, 206, 223, 268, 619
NdeI CATATG 1 cut(s) 1047
NdeII GATC 6 cut(s) 96, 232, 580, 604, 670, 903
NlaIII CATG 6 cut(s) 106, 509, 617, 710, 785, 830
NlaIV GGNNCC 3 cut(s) 352, 805, 1036
NmuCI GTSAC 2 cut(s) 480, 962
NsbI TGCGCA 1 cut(s) 341
NsiI ATGCAT 1 cut(s) 615
PagI TCATGA 1 cut(s) 706
PctI GAATGC 1 cut(s) 202
PdmI GAANNNNTTC 1 cut(s) 905
PfeI GAWTC 1 cut(s) 169
PflMI CCANNNNNTGG 2 cut(s) 875, 932
PfoI TCCNGGA 1 cut(s) 318
PkrI GCNGC 3 cut(s) 228, 663, 766
Ple19I CGATCG 1 cut(s) 235
PleI GAGTC 1 cut(s) 487
PpsI GAGTC 1 cut(s) 487
Ppu21I YACGTR 1 cut(s) 595
PpuMI RGGWCCY 1 cut(s) 350
PshBI ATTAAT 1 cut(s) 885
Psp5II RGGWCCY 1 cut(s) 350
Psp6I CCWGG 3 cut(s) 149, 318, 633
PspEI GGTNACC 1 cut(s) 962
PspFI CCCAGC 2 cut(s) 267, 353
PspGI CCWGG 3 cut(s) 149, 318, 633
PspN4I GGNNCC 3 cut(s) 352, 805, 1036
PspPI GGNCC 3 cut(s) 350, 803, 830
PspPPI RGGWCCY 1 cut(s) 350
PsuI RGATCY 1 cut(s) 903
PvuI CGATCG 1 cut(s) 235
PvuII CAGCTG 1 cut(s) 664
RsaI GTAC 1 cut(s) 1058
RsaNI GTAC 1 cut(s) 1057
SaqAI TTAA 8 cut(s) 678, 738, 749, 810, 821, 885, 1025, 1069
SatI GCNGC 3 cut(s) 227, 662, 765
Sau3AI GATC 6 cut(s) 96, 232, 580, 604, 670, 903
Sau96I GGNCC 3 cut(s) 350, 803, 830
SchI GAGTC 1 cut(s) 488
ScrFI CCNGG 3 cut(s) 151, 320, 635
SfaNI GCATC 1 cut(s) 600
SfcI CTRYAG 1 cut(s) 444
SinI GGWCC 2 cut(s) 350, 803
SmlI CTYRAG 2 cut(s) 366, 860
SmoI CTYRAG 2 cut(s) 366, 860
SsiI CCGC 3 cut(s) 159, 226, 271
SspMI CTAG 2 cut(s) 383, 411
StyD4I CCNGG 3 cut(s) 149, 318, 633
StyI CCWWGG 2 cut(s) 162, 712
TaiI ACGT 3 cut(s) 597, 703, 775
TaqI TCGA 4 cut(s) 81, 114, 235, 256
TatI WGTACW 1 cut(s) 1056
TauI GCSGC 1 cut(s) 229
TfiI GAWTC 1 cut(s) 169
Tru1I TTAA 8 cut(s) 678, 738, 749, 810, 821, 885, 1025, 1069
Tru9I TTAA 8 cut(s) 678, 738, 749, 810, 821, 885, 1025, 1069
TscAI CASTG 2 cut(s) 583, 937
TseFI GTSAC 2 cut(s) 480, 962
TseI GCWGC 2 cut(s) 661, 764
Tsp45I GTSAC 2 cut(s) 480, 962
TspDTI ATGAA 4 cut(s) 642, 759, 898, 1017
TspRI CASTG 2 cut(s) 583, 937
Van91I CCANNNNNTGG 2 cut(s) 875, 932
VpaK11BI GGWCC 2 cut(s) 350, 803
VspI ATTAAT 1 cut(s) 885
XapI RAATTY 1 cut(s) 942
XmnI GAANNNNTTC 1 cut(s) 905
XspI CTAG 2 cut(s) 383, 411
ZraI GACGTC 2 cut(s) 701, 773
Zsp2I ATGCAT 1 cut(s) 615
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.