Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_sc0001229.1

Orthogroup ID

OG0000314

Physical Location & Seq

Genomic Coordinates Forward (+)

38241 .. 39860

Gene Structure 1620 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_sc0001229.1_g000006.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1203 bp

atgcctgtttttctcaagaagaagaagtacaaattcctaaacttctcaaagcacaaggcctccagttacaagctgcataaaactgatggtgacgctgctactgcagatgacgaggcgacaatagaaggctatgtgcccattcccattccagagaatgcgagcatagaagagcggcttgatatccttcaaaagaattctgccgcataccatgagaagatagaaaagccctcgcagaggaccatcgatggctcgatgaaacctactcgtgaagaggtcatttctgagactaacttgcctataggtggcaatcaacctaagggtctcactggtgagtcacagccttacacagaggttgtgcatggaaaaggtcatcaacaagattgttcttctgacaatacaattgtctctgaacaaatatctgatttctccactgatcaagctaaatacgtggctactaatcagatgcatagggggcaagatatggtccatgatcatccctttgatcaaaagaagcaagttcatgatcattttaattgtgactctgctactggacgtcatgaccatgcgaaaggtcaagaacatgacccactcaattatcaatcaagatatgaccatgcagaggatcaatcaagacatggcccgcttaattatcaatttttccttggccatactactggacgtcatggtgaagaggcaaacaaatacttgatatgcctatctttgaagaggagatcggagatcaattcatcaaattttggtgattctaaatatgatctcgatgcggagccaatctatgatgtatatgatgataattacaatttgattactggtttcaaaaatcatatgcaagagtccaagtgctttaaggctcttgatatagaggattcaaaacaaaaagtggtcaaatgcaaaggccaattcgtggcttattttgaagacaccatgttctatgatatggtagttggtaacaaagctgatctatactcatcttcatctccaaaattgcaattgaagaccatgctttgggaaccaacaaggatacttggggggcaagattacccctctcacgagccaaattcctccaaattcttcaacgcgaagtatctttgttcttttcctacaagttctcacaggagggatttttaccctacaaattttgatacatcggagcttggagtgaagcatagatggcctccccagtga

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003676 GO:0003723 GO:0003824 GO:0004652 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005829 GO:0006139 GO:0006276 GO:0006378 GO:0006396 GO:0006397 GO:0006725 GO:0006807 GO:0008150 GO:0008152 GO:0009451 GO:0009987 GO:0010467 GO:0016070 GO:0016071 GO:0016740 GO:0016772 GO:0016779 GO:0031123 GO:0031124 GO:0034641 GO:0043170 GO:0043412 GO:0043631 GO:0044237 GO:0044238 GO:0044424 GO:0044444 GO:0044464 GO:0046483 GO:0070566 GO:0071704 GO:0090304 GO:0097159 GO:1901360 GO:1901363

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

PolyA_pol PolyA_pol_RNAbd

Protein Analysis

400

Amino Acids

45.78

Weight (kDa)

6.16

Isoelectric Point (pI)

54.05

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0000314)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_1g02272 FvH4_1g22661 FvH4_2g10242 FvH4_2g34051 FvH4_3g19221 FvH4_3g29651 FvH4_3g30891 FvH4_4g11061 FvH4_5g09250 FvH4_5g15302 FvH4_5g15303 FvH4_5g15304 FvH4_5g28521 FvH4_6g23591 FvH4_7g05710 FvH4_7g19520
pyrus_communis	pycom07g06330
rosa_chinensis	RchiOBHm_Chr5g0027301 RchiOBHm_Chr6g0251451 RchiOBHm_Chr6g0274861
rosa_laevigata	RLG00000007850
rosa_multiflora	Rmu_co8230721.1_g000001 Rmu_sc0000271.1_g000027 Rmu_sc0000303.1_g000024 Rmu_sc0000368.1_g000024 Rmu_sc0000621.1_g000037 Rmu_sc0000693.1_g000081 Rmu_sc0001229.1_g000006 Rmu_sc0001373.1_g000003 Rmu_sc0001459.1_g000001 Rmu_sc0001744.1_g000002 Rmu_sc0001909.1_g000002 Rmu_sc0002053.1_g000012 Rmu_sc0002060.1_g000015 Rmu_sc0002119.1_g000036 Rmu_sc0002177.1_g000007 Rmu_sc0002822.1_g000024 Rmu_sc0002965.1_g000015 Rmu_sc0003363.1_g000051 Rmu_sc0003500.1_g000013 Rmu_sc0004191.1_g000020 Rmu_sc0004904.1_g000032 Rmu_sc0005325.1_g000008 Rmu_sc0005947.1_g000040 Rmu_sc0006475.1_g000001 Rmu_sc0006522.1_g000019 Rmu_sc0007102.1_g000005 Rmu_sc0007810.1_g000003 Rmu_sc0008339.1_g000025 Rmu_sc0008698.1_g000004 Rmu_sc0009313.1_g000006 Rmu_sc0009850.1_g000006 Rmu_sc0010598.1_g000003 Rmu_sc0011162.1_g000002 Rmu_sc0011824.1_g000004 Rmu_sc0011900.1_g000010 Rmu_sc0012291.1_g000006 Rmu_sc0012619.1_g000003 Rmu_sc0014679.1_g000001 Rmu_sc0019053.1_g000001 Rmu_sc0021462.1_g000003 Rmu_sc0024172.1_g000001 Rmu_sc0024173.1_g000001 Rmu_ssc0000052.1_g000016 Rmu_ssc0000392.1_g000010 Rmu_ssc0000421.1_g000062 Rmu_ssc0000479.1_g000006
rosa_roxburghii	Rroxscaffold_153G00436600 Rroxscaffold_1G00008580 Rroxscaffold_1G00016770 Rroxscaffold_1G00029550 Rroxscaffold_1G00036450 Rroxscaffold_1G00040410 Rroxscaffold_1G00047110 Rroxscaffold_1G00060570 Rroxscaffold_2G00081500 Rroxscaffold_2G00081510 Rroxscaffold_2G00086080 Rroxscaffold_2G00099620 Rroxscaffold_2G00099630 Rroxscaffold_2G00099640 Rroxscaffold_2G00109170 Rroxscaffold_2G00127750 Rroxscaffold_2G00128590 Rroxscaffold_2G00130780 Rroxscaffold_2G00131040 Rroxscaffold_2G00143160 Rroxscaffold_3G00229280 Rroxscaffold_3G00229290 Rroxscaffold_3G00229970 Rroxscaffold_3G00242860 Rroxscaffold_3G00242890 Rroxscaffold_3G00242900 Rroxscaffold_3G00248200 Rroxscaffold_4G00284550 Rroxscaffold_4G00288780 Rroxscaffold_4G00298620 Rroxscaffold_4G00298630 Rroxscaffold_4G00312420 Rroxscaffold_4G00320310 Rroxscaffold_4G00322220 Rroxscaffold_4G00323600 Rroxscaffold_4G00331830 Rroxscaffold_4G00332010 Rroxscaffold_4G00332020 Rroxscaffold_5G00344470 Rroxscaffold_5G00345310 Rroxscaffold_5G00356120 Rroxscaffold_5G00368700 Rroxscaffold_5G00379820 Rroxscaffold_5G00382480 Rroxscaffold_6G00395080 Rroxscaffold_6G00405520 Rroxscaffold_6G00428210 Rroxscaffold_7G00193460
rosa_samantha	Rh7CG413200 Rh7DG284900

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AatII	GACGTC	2 cut(s)	556, 682
AccB7I	CCANNNNNTGG	2 cut(s)	922, 1023
AccBSI	CCGCTC	1 cut(s)	172
AccII	CGCG	1 cut(s)	1097
AciI	CCGC	4 cut(s)	172, 201, 641, 782
AclWI	GGATC	1 cut(s)	630
AcoI	YGGCCR	1 cut(s)	664
AcsI	RAATTY	6 cut(s)	32, 193, 751, 1075, 1085, 1153
AcyI	GRCGYC	2 cut(s)	553, 679
AfaI	GTAC	1 cut(s)	29
AfiI	CCNNNNNNNGG	5 cut(s)	234, 302, 619, 922, 1023
AgsI	TTSAA	7 cut(s)	188, 724, 835, 888, 935, 1012, 1093
AluBI	AGCT	4 cut(s)	73, 440, 974, 1171
AluI	AGCT	4 cut(s)	73, 440, 974, 1171
Alw26I	GTCTC	3 cut(s)	278, 326, 409
AlwI	GGATC	1 cut(s)	630
AoxI	GGCC	5 cut(s)	57, 637, 664, 913, 1190
ApeKI	GCWGC	2 cut(s)	73, 95
ApoI	RAATTY	6 cut(s)	32, 193, 751, 1075, 1085, 1153
AspS9I	GGNCC	3 cut(s)	237, 484, 638
AsuHPI	GGTGA	4 cut(s)	101, 341, 698, 770
AvaII	GGWCC	2 cut(s)	237, 484
AxyI	CCTNAGG	1 cut(s)	315
BaeGI	GKGCMC	1 cut(s)	138
BalI	TGGCCA	1 cut(s)	666
BarI	GAAGNNNNNNTAC	2 cut(s)	11, 43
BauI	CACGAG	2 cut(s)	264, 1067
BbsI	GAAGAC	2 cut(s)	942, 1019
BbvI	GCAGC	2 cut(s)	60, 82
BccI	CCATC	4 cut(s)	80, 239, 248, 1182
BciVI	GTATCC	1 cut(s)	1032
BclI	TGATCA	4 cut(s)	433, 490, 502, 523
BcoDI	GTCTC	3 cut(s)	278, 326, 409
BfmI	CTRYAG	2 cut(s)	102, 297
BfuI	GTATCC	1 cut(s)	1032
BisI	GCNGC	4 cut(s)	74, 96, 173, 201
BlsI	GCNGC	4 cut(s)	75, 97, 174, 202
Bme18I	GGWCC	2 cut(s)	237, 484
BmgT120I	GGNCC	3 cut(s)	237, 484, 638
BmiI	GGNNCC	2 cut(s)	786, 1029
BmrI	ACTGGG	1 cut(s)	1192
BmsI	GCATC	2 cut(s)	453, 769
BmuI	ACTGGG	1 cut(s)	1192
BpiI	GAAGAC	2 cut(s)	942, 1019
BpmI	CTGGAG	1 cut(s)	46
Bsa29I	ATCGAT	1 cut(s)	243
BsaAI	YACGTR	1 cut(s)	448
BsaHI	GRCGYC	2 cut(s)	553, 679
BsaI	GGTCTC	1 cut(s)	326
BsaJI	CCNNGG	1 cut(s)	661
BsaXI	ACNNNNNCTCC	2 cut(s)	44, 74
Bsc4I	CCNNNNNNNGG	5 cut(s)	234, 302, 619, 922, 1023
Bse1I	ACTGG	6 cut(s)	63, 331, 553, 679, 832, 1198
Bse21I	CCTNAGG	1 cut(s)	315
BseCI	ATCGAT	1 cut(s)	243
BseDI	CCNNGG	1 cut(s)	661
BseGI	GGATG	1 cut(s)	493
BseLI	CCNNNNNNNGG	5 cut(s)	234, 302, 619, 922, 1023
BseMII	CTCAG	1 cut(s)	273
BseNI	ACTGG	6 cut(s)	63, 331, 553, 679, 832, 1198
BseRI	GAGGAG	1 cut(s)	742
BseSI	GKGCMC	1 cut(s)	138
BseXI	GCAGC	2 cut(s)	60, 82
Bsh1236I	CGCG	1 cut(s)	1097
BshFI	GGCC	5 cut(s)	59, 639, 666, 915, 1192
BshVI	ATCGAT	1 cut(s)	243
BslI	CCNNNNNNNGG	5 cut(s)	234, 302, 619, 922, 1023
BsmAI	GTCTC	3 cut(s)	278, 326, 409
BsmI	GAATGC	1 cut(s)	160
BsnI	GGCC	5 cut(s)	59, 639, 666, 915, 1192
Bso31I	GGTCTC	1 cut(s)	326
Bsp1286I	GDGCHC	1 cut(s)	138
Bsp143I	GATC	9 cut(s)	433, 490, 502, 523, 622, 731, 738, 772, 976
BspACI	CCGC	4 cut(s)	172, 201, 641, 782
BspANI	GGCC	5 cut(s)	59, 639, 666, 915, 1192
BspCNI	CTCAG	1 cut(s)	274
BspDI	ATCGAT	1 cut(s)	243
BspFNI	CGCG	1 cut(s)	1097
BspHI	TCATGA	2 cut(s)	520, 556
BspLI	GGNNCC	2 cut(s)	786, 1029
BspMAI	CTGCAG	1 cut(s)	106
BspPI	GGATC	1 cut(s)	630
BspQI	GCTCTTC	1 cut(s)	162
BspTNI	GGTCTC	1 cut(s)	326
BsrBI	CCGCTC	1 cut(s)	172
BsrI	ACTGG	6 cut(s)	63, 331, 553, 679, 832, 1198
BssECI	CCNNGG	1 cut(s)	661
BssMI	GATC	9 cut(s)	433, 490, 502, 523, 622, 731, 738, 772, 976
BssNI	GRCGYC	2 cut(s)	553, 679
BssSI	CACGAG	2 cut(s)	264, 1067
BssT1I	CCWWGG	1 cut(s)	661
Bst2BI	CACGAG	2 cut(s)	264, 1067
Bst6I	CTCTTC	4 cut(s)	162, 264, 684, 719
BstACI	GRCGYC	2 cut(s)	553, 679
BstBAI	YACGTR	1 cut(s)	448
BstC8I	GCNNGC	2 cut(s)	160, 641
BstDEI	CTNAG	2 cut(s)	282, 315
BstENI	CCTNNNNNAGG	1 cut(s)	232
BstF5I	GGATG	1 cut(s)	493
BstFNI	CGCG	1 cut(s)	1097
BstKTI	GATC	9 cut(s)	436, 493, 505, 526, 625, 734, 741, 775, 979
BstMAI	GTCTC	3 cut(s)	278, 326, 409
BstMBI	GATC	9 cut(s)	433, 490, 502, 523, 622, 731, 738, 772, 976
BstMWI	GCNNNNNNNGC	3 cut(s)	101, 472, 1189
BstSFI	CTRYAG	2 cut(s)	102, 297
BstSLI	GKGCMC	1 cut(s)	138
BstUI	CGCG	1 cut(s)	1097
BstV1I	GCAGC	2 cut(s)	60, 82
BstV2I	GAAGAC	2 cut(s)	942, 1019
BstXI	CCANNNNNNTGG	1 cut(s)	674
Bsu15I	ATCGAT	1 cut(s)	243
Bsu36I	CCTNAGG	1 cut(s)	315
BsuI	GTATCC	1 cut(s)	1032
BsuRI	GGCC	5 cut(s)	59, 639, 666, 915, 1192
BsuTUI	ATCGAT	1 cut(s)	243
BtsCI	GGATG	1 cut(s)	493
BtsIMutI	CAGTG	2 cut(s)	324, 429
Cac8I	GCNNGC	2 cut(s)	160, 641
CciI	TCATGA	2 cut(s)	520, 556
Cfr13I	GGNCC	3 cut(s)	237, 484, 638
ClaI	ATCGAT	1 cut(s)	243
CseI	GACGC	1 cut(s)	101
Csp6I	GTAC	1 cut(s)	28
CviQI	GTAC	1 cut(s)	28
DdeI	CTNAG	2 cut(s)	282, 315
DpnI	GATC	9 cut(s)	435, 492, 504, 525, 624, 733, 740, 774, 978
DpnII	GATC	9 cut(s)	433, 490, 502, 523, 622, 731, 738, 772, 976
EaeI	YGGCCR	1 cut(s)	664
Eam1104I	CTCTTC	4 cut(s)	162, 264, 684, 719
EarI	CTCTTC	4 cut(s)	162, 264, 684, 719
Eco130I	CCWWGG	1 cut(s)	661
Eco147I	AGGCCT	1 cut(s)	59
Eco31I	GGTCTC	1 cut(s)	326
Eco32I	GATATC	1 cut(s)	181
Eco47I	GGWCC	2 cut(s)	237, 484
Eco81I	CCTNAGG	1 cut(s)	315
EcoNI	CCTNNNNNAGG	1 cut(s)	232
EcoRI	GAATTC	1 cut(s)	193
EcoRV	GATATC	1 cut(s)	181
EcoT14I	CCWWGG	1 cut(s)	661
EcoT22I	ATGCAT	1 cut(s)	468
ErhI	CCWWGG	1 cut(s)	661
FalI	AAGNNNNNCTT	2 cut(s)	159, 191
FauI	CCCGC	1 cut(s)	648
FauNDI	CATATG	1 cut(s)	843
FbaI	TGATCA	4 cut(s)	433, 490, 502, 523
Fnu4HI	GCNGC	4 cut(s)	74, 96, 173, 201
FokI	GGATG	1 cut(s)	480
Fsp4HI	GCNGC	4 cut(s)	74, 96, 173, 201
GluI	GCNGC	4 cut(s)	74, 96, 173, 201
GsuI	CTGGAG	1 cut(s)	46
HaeIII	GGCC	5 cut(s)	59, 639, 666, 915, 1192
HgaI	GACGC	1 cut(s)	101
Hin1I	GRCGYC	2 cut(s)	553, 679
HinfI	GANTC	5 cut(s)	332, 539, 761, 851, 884
HphI	GGTGA	4 cut(s)	101, 341, 698, 770
Hpy188I	TCNGA	7 cut(s)	283, 391, 409, 421, 462, 736, 1168
HpyAV	CCTTC	2 cut(s)	119, 194
HpyCH4IV	ACGT	3 cut(s)	447, 553, 679
HpyCH4V	TGCA	8 cut(s)	76, 104, 358, 466, 617, 847, 909, 1006
HpyF10VI	GCNNNNNNNGC	3 cut(s)	101, 472, 1189
HpyF3I	CTNAG	2 cut(s)	282, 315
HpySE526I	ACGT	3 cut(s)	447, 553, 679
Hsp92I	GRCGYC	2 cut(s)	553, 679
Ksp22I	TGATCA	4 cut(s)	433, 490, 502, 523
Kzo9I	GATC	9 cut(s)	433, 490, 502, 523, 622, 731, 738, 772, 976
LguI	GCTCTTC	1 cut(s)	162
LmnI	GCTCC	2 cut(s)	784, 1168
LpnPI	CCDG	8 cut(s)	18, 76, 162, 312, 534, 660, 813, 1117
Lsp1109I	GCAGC	2 cut(s)	60, 82
LweI	GCATC	2 cut(s)	453, 769
MaeII	ACGT	3 cut(s)	447, 553, 679
MaeIII	GTNAC	5 cut(s)	65, 89, 333, 536, 965
MalI	GATC	9 cut(s)	435, 492, 504, 525, 624, 733, 740, 774, 978
MbiI	CCGCTC	1 cut(s)	172
MboI	GATC	9 cut(s)	433, 490, 502, 523, 622, 731, 738, 772, 976
MfeI	CAATTG	2 cut(s)	399, 1007
MhlI	GDGCHC	1 cut(s)	138
MlsI	TGGCCA	1 cut(s)	666
MluNI	TGGCCA	1 cut(s)	666
MlyI	GAGTC	3 cut(s)	341, 533, 860
Mox20I	TGGCCA	1 cut(s)	666
Mph1103I	ATGCAT	1 cut(s)	468
MscI	TGGCCA	1 cut(s)	666
MseI	TTAA	3 cut(s)	531, 645, 864
MslI	CAYNNNNRTG	1 cut(s)	561
Msp20I	TGGCCA	1 cut(s)	666
MunI	CAATTG	2 cut(s)	399, 1007
Mva1269I	GAATGC	1 cut(s)	160
MvnI	CGCG	1 cut(s)	1097
MwoI	GCNNNNNNNGC	3 cut(s)	101, 472, 1189
NdeI	CATATG	1 cut(s)	843
NdeII	GATC	9 cut(s)	433, 490, 502, 523, 622, 731, 738, 772, 976
NlaIV	GGNNCC	2 cut(s)	786, 1029
NmuCI	GTSAC	3 cut(s)	89, 333, 536
NsiI	ATGCAT	1 cut(s)	468
PagI	TCATGA	2 cut(s)	520, 556
PceI	AGGCCT	1 cut(s)	59
PciSI	GCTCTTC	1 cut(s)	162
PctI	GAATGC	1 cut(s)	160
PfeI	GAWTC	2 cut(s)	761, 884
PflMI	CCANNNNNTGG	2 cut(s)	922, 1023
PkrI	GCNGC	4 cut(s)	75, 97, 174, 202
PleI	GAGTC	3 cut(s)	340, 533, 859
PpsI	GAGTC	3 cut(s)	340, 533, 859
Ppu21I	YACGTR	1 cut(s)	448
PspN4I	GGNNCC	2 cut(s)	786, 1029
PspPI	GGNCC	3 cut(s)	237, 484, 638
PstI	CTGCAG	1 cut(s)	106
RsaI	GTAC	1 cut(s)	29
RsaNI	GTAC	1 cut(s)	28
RseI	CAYNNNNRTG	1 cut(s)	561
SapI	GCTCTTC	1 cut(s)	162
SaqAI	TTAA	3 cut(s)	531, 645, 864
SatI	GCNGC	4 cut(s)	74, 96, 173, 201
Sau3AI	GATC	9 cut(s)	433, 490, 502, 523, 622, 731, 738, 772, 976
Sau96I	GGNCC	3 cut(s)	237, 484, 638
SchI	GAGTC	3 cut(s)	341, 533, 860
SduI	GDGCHC	1 cut(s)	138
SfaNI	GCATC	2 cut(s)	453, 769
SfcI	CTRYAG	2 cut(s)	102, 297
SinI	GGWCC	2 cut(s)	237, 484
SmiMI	CAYNNNNRTG	1 cut(s)	561
SmlI	CTYRAG	1 cut(s)	14
SmoI	CTYRAG	1 cut(s)	14
SseBI	AGGCCT	1 cut(s)	59
SsiI	CCGC	4 cut(s)	172, 201, 641, 782
StuI	AGGCCT	1 cut(s)	59
StyI	CCWWGG	1 cut(s)	661
TaiI	ACGT	3 cut(s)	450, 556, 682
TaqI	TCGA	3 cut(s)	243, 251, 777
TatI	WGTACW	1 cut(s)	27
TauI	GCSGC	2 cut(s)	175, 203
TfiI	GAWTC	2 cut(s)	761, 884
Tru1I	TTAA	3 cut(s)	531, 645, 864
Tru9I	TTAA	3 cut(s)	531, 645, 864
TscAI	CASTG	2 cut(s)	331, 436
TseFI	GTSAC	3 cut(s)	89, 333, 536
TseI	GCWGC	2 cut(s)	73, 95
Tsp45I	GTSAC	3 cut(s)	89, 333, 536
TspDTI	ATGAA	4 cut(s)	269, 509, 735, 981
TspRI	CASTG	2 cut(s)	331, 436
Van91I	CCANNNNNTGG	2 cut(s)	922, 1023
VpaK11BI	GGWCC	2 cut(s)	237, 484
XagI	CCTNNNNNAGG	1 cut(s)	232
XapI	RAATTY	6 cut(s)	32, 193, 751, 1075, 1085, 1153
ZraI	GACGTC	2 cut(s)	554, 680
Zsp2I	ATGCAT	1 cut(s)	468

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.