Basic Information

Type: gene

Biological Identity

Species

rosa_roxburghii

Chromosome

GWHEROQ00000002

Orthogroup ID

OG0000314

Physical Location & Seq

Genomic Coordinates Reverse (-)

33287296 .. 33288328

Gene Structure 1033 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rroxscaffold_2G00109170.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 459 bp

ATGGAGCCTATCCCGAACCAAAACAATAAGATCTCATCGAGTTCGCGACTGGCGCGAGGAAGGTTCCGCTTGGCTACTCAAGTCGGTTCGCATCAAGGCGAATTGGAACATCAAGAAGCCGCTCGCGAAGAGGTTGTTTACGAGACTGAATTGCCTATAGGTGGCAATCAATCCAAGGGTCTCACTAGCGAATCACAGCCTTACATAGAGGCTAAGTTCAAGTTCTTTGAAGCTCTTGATCATGAGAATTTTGACCAACAAGTGGTCAAATACAAAAGCCAATTTGTGGCTTATTCTAGAGATGCCATGGTCTATGACATGGTAGTTGGTGACAAAGCCAATCTTGGGACAACGTCATCTCCAAAAGTGCAATTGGAGATCATGCTTCGTCAACCAACAAAGATACTTGGGGCAATATTAATCCTTCTACGAGCTAAATTTTTCCAATTCTTCGATTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003676 GO:0003723 GO:0003824 GO:0004652 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005829 GO:0006139 GO:0006276 GO:0006378 GO:0006396 GO:0006397 GO:0006725 GO:0006807 GO:0008150 GO:0008152 GO:0009451 GO:0009987 GO:0010467 GO:0016070 GO:0016071 GO:0016740 GO:0016772 GO:0016779 GO:0031123 GO:0031124 GO:0034641 GO:0043170 GO:0043412 GO:0043631 GO:0044237 GO:0044238 GO:0044424 GO:0044444 GO:0044464 GO:0046483 GO:0070566 GO:0071704 GO:0090304 GO:0097159 GO:1901360 GO:1901363

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

PolyA_pol PolyA_pol_RNAbd

Protein Analysis

152

Amino Acids

17.26

Weight (kDa)

6.31

Isoelectric Point (pI)

42.26

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0000314)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_1g02272 FvH4_1g22661 FvH4_2g10242 FvH4_2g34051 FvH4_3g19221 FvH4_3g29651 FvH4_3g30891 FvH4_4g11061 FvH4_5g09250 FvH4_5g15302 FvH4_5g15303 FvH4_5g15304 FvH4_5g28521 FvH4_6g23591 FvH4_7g05710 FvH4_7g19520
pyrus_communis	pycom07g06330
rosa_chinensis	RchiOBHm_Chr5g0027301 RchiOBHm_Chr6g0251451 RchiOBHm_Chr6g0274861
rosa_laevigata	RLG00000007850
rosa_multiflora	Rmu_co8230721.1_g000001 Rmu_sc0000271.1_g000027 Rmu_sc0000303.1_g000024 Rmu_sc0000368.1_g000024 Rmu_sc0000621.1_g000037 Rmu_sc0000693.1_g000081 Rmu_sc0001229.1_g000006 Rmu_sc0001373.1_g000003 Rmu_sc0001459.1_g000001 Rmu_sc0001744.1_g000002 Rmu_sc0001909.1_g000002 Rmu_sc0002053.1_g000012 Rmu_sc0002060.1_g000015 Rmu_sc0002119.1_g000036 Rmu_sc0002177.1_g000007 Rmu_sc0002822.1_g000024 Rmu_sc0002965.1_g000015 Rmu_sc0003363.1_g000051 Rmu_sc0003500.1_g000013 Rmu_sc0004191.1_g000020 Rmu_sc0004904.1_g000032 Rmu_sc0005325.1_g000008 Rmu_sc0005947.1_g000040 Rmu_sc0006475.1_g000001 Rmu_sc0006522.1_g000019 Rmu_sc0007102.1_g000005 Rmu_sc0007810.1_g000003 Rmu_sc0008339.1_g000025 Rmu_sc0008698.1_g000004 Rmu_sc0009313.1_g000006 Rmu_sc0009850.1_g000006 Rmu_sc0010598.1_g000003 Rmu_sc0011162.1_g000002 Rmu_sc0011824.1_g000004 Rmu_sc0011900.1_g000010 Rmu_sc0012291.1_g000006 Rmu_sc0012619.1_g000003 Rmu_sc0014679.1_g000001 Rmu_sc0019053.1_g000001 Rmu_sc0021462.1_g000003 Rmu_sc0024172.1_g000001 Rmu_sc0024173.1_g000001 Rmu_ssc0000052.1_g000016 Rmu_ssc0000392.1_g000010 Rmu_ssc0000421.1_g000062 Rmu_ssc0000479.1_g000006
rosa_roxburghii	Rroxscaffold_153G00436600 Rroxscaffold_1G00008580 Rroxscaffold_1G00016770 Rroxscaffold_1G00029550 Rroxscaffold_1G00036450 Rroxscaffold_1G00040410 Rroxscaffold_1G00047110 Rroxscaffold_1G00060570 Rroxscaffold_2G00081500 Rroxscaffold_2G00081510 Rroxscaffold_2G00086080 Rroxscaffold_2G00099620 Rroxscaffold_2G00099630 Rroxscaffold_2G00099640 Rroxscaffold_2G00109170 Rroxscaffold_2G00127750 Rroxscaffold_2G00128590 Rroxscaffold_2G00130780 Rroxscaffold_2G00131040 Rroxscaffold_2G00143160 Rroxscaffold_3G00229280 Rroxscaffold_3G00229290 Rroxscaffold_3G00229970 Rroxscaffold_3G00242860 Rroxscaffold_3G00242890 Rroxscaffold_3G00242900 Rroxscaffold_3G00248200 Rroxscaffold_4G00284550 Rroxscaffold_4G00288780 Rroxscaffold_4G00298620 Rroxscaffold_4G00298630 Rroxscaffold_4G00312420 Rroxscaffold_4G00320310 Rroxscaffold_4G00322220 Rroxscaffold_4G00323600 Rroxscaffold_4G00331830 Rroxscaffold_4G00332010 Rroxscaffold_4G00332020 Rroxscaffold_5G00344470 Rroxscaffold_5G00345310 Rroxscaffold_5G00356120 Rroxscaffold_5G00368700 Rroxscaffold_5G00379820 Rroxscaffold_5G00382480 Rroxscaffold_6G00395080 Rroxscaffold_6G00405520 Rroxscaffold_6G00428210 Rroxscaffold_7G00193460
rosa_samantha	Rh7CG413200 Rh7DG284900

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB7I	CCANNNNNTGG	2 cut(s)	262, 286
AccBSI	CCGCTC	1 cut(s)	122
AccII	CGCG	3 cut(s)	46, 55, 126
AciI	CCGC	2 cut(s)	67, 120
AcsI	RAATTY	2 cut(s)	247, 437
AfiI	CCNNNNNNNGG	4 cut(s)	161, 262, 286, 345
AgsI	TTSAA	2 cut(s)	220, 230
AluBI	AGCT	2 cut(s)	233, 434
AluI	AGCT	2 cut(s)	233, 434
Alw26I	GTCTC	2 cut(s)	137, 185
ApoI	RAATTY	2 cut(s)	247, 437
AseI	ATTAAT	1 cut(s)	419
AspLEI	GCGC	1 cut(s)	55
AsuHPI	GGTGA	1 cut(s)	341
BclI	TGATCA	1 cut(s)	238
BcoDI	GTCTC	2 cut(s)	137, 185
BfaI	CTAG	2 cut(s)	186, 297
BfmI	CTRYAG	1 cut(s)	156
BglII	AGATCT	1 cut(s)	30
BisI	GCNGC	1 cut(s)	120
BlsI	GCNGC	1 cut(s)	121
BmiI	GGNNCC	2 cut(s)	6, 65
BmsI	GCATC	2 cut(s)	100, 292
BpuEI	CTTGAG	1 cut(s)	63
BsaI	GGTCTC	1 cut(s)	185
BsaJI	CCNNGG	2 cut(s)	174, 306
BsaXI	ACNNNNNCTCC	2 cut(s)	343, 373
Bsc4I	CCNNNNNNNGG	4 cut(s)	161, 262, 286, 345
Bse1I	ACTGG	1 cut(s)	54
BseDI	CCNNGG	2 cut(s)	174, 306
BseLI	CCNNNNNNNGG	4 cut(s)	161, 262, 286, 345
BseNI	ACTGG	1 cut(s)	54
Bsh1236I	CGCG	3 cut(s)	46, 55, 126
BslFI	GGGAC	1 cut(s)	361
BslI	CCNNNNNNNGG	4 cut(s)	161, 262, 286, 345
BsmAI	GTCTC	2 cut(s)	137, 185
BsmFI	GGGAC	1 cut(s)	361
Bso31I	GGTCTC	1 cut(s)	185
Bsp143I	GATC	3 cut(s)	30, 238, 378
Bsp19I	CCATGG	1 cut(s)	306
Bsp68I	TCGCGA	2 cut(s)	46, 126
BspACI	CCGC	2 cut(s)	67, 120
BspFNI	CGCG	3 cut(s)	46, 55, 126
BspHI	TCATGA	1 cut(s)	241
BspLI	GGNNCC	2 cut(s)	6, 65
BspTNI	GGTCTC	1 cut(s)	185
BsrBI	CCGCTC	1 cut(s)	122
BsrI	ACTGG	1 cut(s)	54
BssECI	CCNNGG	2 cut(s)	174, 306
BssMI	GATC	3 cut(s)	30, 238, 378
BssT1I	CCWWGG	2 cut(s)	174, 306
Bst6I	CTCTTC	1 cut(s)	123
BstC8I	GCNNGC	1 cut(s)	124
BstDEI	CTNAG	1 cut(s)	213
BstDSI	CCRYGG	1 cut(s)	306
BstFNI	CGCG	3 cut(s)	46, 55, 126
BstHHI	GCGC	1 cut(s)	55
BstKTI	GATC	3 cut(s)	33, 241, 381
BstMAI	GTCTC	2 cut(s)	137, 185
BstMBI	GATC	3 cut(s)	30, 238, 378
BstMWI	GCNNNNNNNGC	1 cut(s)	52
BstSFI	CTRYAG	1 cut(s)	156
BstUI	CGCG	3 cut(s)	46, 55, 126
BstX2I	RGATCY	1 cut(s)	30
BstYI	RGATCY	1 cut(s)	30
BtgI	CCRYGG	1 cut(s)	306
BtuMI	TCGCGA	2 cut(s)	46, 126
Cac8I	GCNNGC	1 cut(s)	124
CciI	TCATGA	1 cut(s)	241
CfoI	GCGC	1 cut(s)	55
CviAII	CATG	4 cut(s)	242, 307, 319, 382
DdeI	CTNAG	1 cut(s)	213
DpnI	GATC	3 cut(s)	32, 240, 380
DpnII	GATC	3 cut(s)	30, 238, 378
Eam1104I	CTCTTC	1 cut(s)	123
EarI	CTCTTC	1 cut(s)	123
Eco130I	CCWWGG	2 cut(s)	174, 306
Eco31I	GGTCTC	1 cut(s)	185
EcoT14I	CCWWGG	2 cut(s)	174, 306
ErhI	CCWWGG	2 cut(s)	174, 306
FaeI	CATG	4 cut(s)	245, 310, 322, 385
FaiI	YATR	7 cut(s)	158, 206, 243, 308, 315, 320, 383
FalI	AAGNNNNNCTT	2 cut(s)	327, 359
FaqI	GGGAC	1 cut(s)	361
FatI	CATG	4 cut(s)	241, 306, 318, 381
FbaI	TGATCA	1 cut(s)	238
Fnu4HI	GCNGC	1 cut(s)	120
Fsp4HI	GCNGC	1 cut(s)	120
FspBI	CTAG	2 cut(s)	186, 297
GlaI	GCGC	1 cut(s)	54
GluI	GCNGC	1 cut(s)	120
HhaI	GCGC	1 cut(s)	55
Hin1II	CATG	4 cut(s)	245, 310, 322, 385
Hin6I	GCGC	1 cut(s)	53
HinP1I	GCGC	1 cut(s)	53
HincII	GTYRAC	1 cut(s)	392
HindII	GTYRAC	1 cut(s)	392
HinfI	GANTC	1 cut(s)	191
HphI	GGTGA	1 cut(s)	341
Hpy166II	GTNNAC	2 cut(s)	139, 392
Hpy188III	TCNNGA	7 cut(s)	13, 45, 113, 125, 236, 242, 297
Hpy8I	GTNNAC	2 cut(s)	139, 392
HpyAV	CCTTC	2 cut(s)	54, 434
HpyCH4IV	ACGT	1 cut(s)	353
HpyCH4V	TGCA	1 cut(s)	370
HpyF10VI	GCNNNNNNNGC	1 cut(s)	52
HpyF3I	CTNAG	1 cut(s)	213
HpySE526I	ACGT	1 cut(s)	353
Hsp92II	CATG	4 cut(s)	245, 310, 322, 385
HspAI	GCGC	1 cut(s)	53
Ksp22I	TGATCA	1 cut(s)	238
Kzo9I	GATC	3 cut(s)	30, 238, 378
LmnI	GCTCC	1 cut(s)	4
LpnPI	CCDG	1 cut(s)	35
LweI	GCATC	2 cut(s)	100, 292
MaeI	CTAG	2 cut(s)	186, 297
MaeII	ACGT	1 cut(s)	353
MaeIII	GTNAC	1 cut(s)	329
MalI	GATC	3 cut(s)	32, 240, 380
MbiI	CCGCTC	1 cut(s)	122
MboI	GATC	3 cut(s)	30, 238, 378
MboII	GAAGA	2 cut(s)	140, 442
MfeI	CAATTG	1 cut(s)	371
MflI	RGATCY	1 cut(s)	30
MluCI	AATT	7 cut(s)	101, 149, 247, 281, 371, 437, 446
MnlI	CCTC	3 cut(s)	50, 124, 202
MseI	TTAA	1 cut(s)	419
MunI	CAATTG	1 cut(s)	371
MvnI	CGCG	3 cut(s)	46, 55, 126
MwoI	GCNNNNNNNGC	1 cut(s)	52
NcoI	CCATGG	1 cut(s)	306
NdeII	GATC	3 cut(s)	30, 238, 378
NlaIII	CATG	4 cut(s)	245, 310, 322, 385
NlaIV	GGNNCC	2 cut(s)	6, 65
NmuCI	GTSAC	1 cut(s)	329
NruI	TCGCGA	2 cut(s)	46, 126
PagI	TCATGA	1 cut(s)	241
PfeI	GAWTC	1 cut(s)	191
PflFI	GACNNNGTC	1 cut(s)	352
PflMI	CCANNNNNTGG	2 cut(s)	262, 286
PkrI	GCNGC	1 cut(s)	121
PshBI	ATTAAT	1 cut(s)	419
PspN4I	GGNNCC	2 cut(s)	6, 65
PsuI	RGATCY	1 cut(s)	30
PsyI	GACNNNGTC	1 cut(s)	352
RruI	TCGCGA	2 cut(s)	46, 126
SaqAI	TTAA	1 cut(s)	419
SatI	GCNGC	1 cut(s)	120
Sau3AI	GATC	3 cut(s)	30, 238, 378
SetI	ASST	6 cut(s)	65, 135, 163, 235, 356, 436
SfaNI	GCATC	2 cut(s)	100, 292
SfcI	CTRYAG	1 cut(s)	156
SmlI	CTYRAG	1 cut(s)	78
SmoI	CTYRAG	1 cut(s)	78
Sse9I	AATT	7 cut(s)	101, 149, 247, 281, 371, 437, 446
SsiI	CCGC	2 cut(s)	67, 120
SspI	AATATT	1 cut(s)	417
SspMI	CTAG	2 cut(s)	186, 297
StyI	CCWWGG	2 cut(s)	174, 306
TaiI	ACGT	1 cut(s)	356
TaqI	TCGA	2 cut(s)	38, 453
TasI	AATT	7 cut(s)	101, 149, 247, 281, 371, 437, 446
TauI	GCSGC	1 cut(s)	122
TfiI	GAWTC	1 cut(s)	191
Tru1I	TTAA	1 cut(s)	419
Tru9I	TTAA	1 cut(s)	419
TseFI	GTSAC	1 cut(s)	329
Tsp45I	GTSAC	1 cut(s)	329
Tth111I	GACNNNGTC	1 cut(s)	352
Van91I	CCANNNNNTGG	2 cut(s)	262, 286
VspI	ATTAAT	1 cut(s)	419
XapI	RAATTY	2 cut(s)	247, 437
XbaI	TCTAGA	1 cut(s)	296
XspI	CTAG	2 cut(s)	186, 297

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.