RchiOBHm_Chr6g0251451

Belongs to the tRNA nucleotidyltransferase poly(A) polymerase family

Basic Information

Type: gene
Biological Identity
rosa_chinensis
6
Physical Location & Seq
Forward (+)
6698271 .. 6698645
375 bp
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UTR
Exon/CDS
Intron
PRQ22542

Sequence Viewer

Length: 375 bp
ATGCAGGAGTTCAAGTTCTTTGAGGCTCTTGATCACGAGGATTCAAACCAACAAGTGGTCAAATACAACAGCCAATTCGTGGCTTATTCTAGAGACACCATGTTCTATGACATGGTAGTTGGCGACAGAGCCGATCTTGGGACACCATCATCTCCAAAATTGCAATTGAGGATCATGCTTTGTCAACCAACAAAGATACTTGGGGGGCAATATTACTCCTTCTACGAGCCAAATTTCTTCCAAGTTTTTGATGCGAAGTATCTTTGTTTCTTTCCTGCAAGCCCTTACAAAAGAGGTTTACATGCTATAAATTTTGATGCATCGGAGCTTGGAGTGAAGCATAGGTGGCCTCCCCCGTGGCCTTCTAGAGGTTAG

Protein Analysis

124

Amino Acids

14.49

Weight (kDa)

6.82

Isoelectric Point (pI)

51.73

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready

Orthologous Genes (Group: OG0000314)

Species Orthologous Gene IDs
fragaria_vesca FvH4_1g02272 FvH4_1g22661 FvH4_2g10242 FvH4_2g34051 FvH4_3g19221 FvH4_3g29651 FvH4_3g30891 FvH4_4g11061 FvH4_5g09250 FvH4_5g15302 FvH4_5g15303 FvH4_5g15304 FvH4_5g28521 FvH4_6g23591 FvH4_7g05710 FvH4_7g19520
pyrus_communis pycom07g06330
rosa_chinensis RchiOBHm_Chr5g0027301 RchiOBHm_Chr6g0251451 RchiOBHm_Chr6g0274861
rosa_laevigata RLG00000007850
rosa_multiflora Rmu_co8230721.1_g000001 Rmu_sc0000271.1_g000027 Rmu_sc0000303.1_g000024 Rmu_sc0000368.1_g000024 Rmu_sc0000621.1_g000037 Rmu_sc0000693.1_g000081 Rmu_sc0001229.1_g000006 Rmu_sc0001373.1_g000003 Rmu_sc0001459.1_g000001 Rmu_sc0001744.1_g000002 Rmu_sc0001909.1_g000002 Rmu_sc0002053.1_g000012 Rmu_sc0002060.1_g000015 Rmu_sc0002119.1_g000036 Rmu_sc0002177.1_g000007 Rmu_sc0002822.1_g000024 Rmu_sc0002965.1_g000015 Rmu_sc0003363.1_g000051 Rmu_sc0003500.1_g000013 Rmu_sc0004191.1_g000020 Rmu_sc0004904.1_g000032 Rmu_sc0005325.1_g000008 Rmu_sc0005947.1_g000040 Rmu_sc0006475.1_g000001 Rmu_sc0006522.1_g000019 Rmu_sc0007102.1_g000005 Rmu_sc0007810.1_g000003 Rmu_sc0008339.1_g000025 Rmu_sc0008698.1_g000004 Rmu_sc0009313.1_g000006 Rmu_sc0009850.1_g000006 Rmu_sc0010598.1_g000003 Rmu_sc0011162.1_g000002 Rmu_sc0011824.1_g000004 Rmu_sc0011900.1_g000010 Rmu_sc0012291.1_g000006 Rmu_sc0012619.1_g000003 Rmu_sc0014679.1_g000001 Rmu_sc0019053.1_g000001 Rmu_sc0021462.1_g000003 Rmu_sc0024172.1_g000001 Rmu_sc0024173.1_g000001 Rmu_ssc0000052.1_g000016 Rmu_ssc0000392.1_g000010 Rmu_ssc0000421.1_g000062 Rmu_ssc0000479.1_g000006
rosa_roxburghii Rroxscaffold_153G00436600 Rroxscaffold_1G00008580 Rroxscaffold_1G00016770 Rroxscaffold_1G00029550 Rroxscaffold_1G00036450 Rroxscaffold_1G00040410 Rroxscaffold_1G00047110 Rroxscaffold_1G00060570 Rroxscaffold_2G00081500 Rroxscaffold_2G00081510 Rroxscaffold_2G00086080 Rroxscaffold_2G00099620 Rroxscaffold_2G00099630 Rroxscaffold_2G00099640 Rroxscaffold_2G00109170 Rroxscaffold_2G00127750 Rroxscaffold_2G00128590 Rroxscaffold_2G00130780 Rroxscaffold_2G00131040 Rroxscaffold_2G00143160 Rroxscaffold_3G00229280 Rroxscaffold_3G00229290 Rroxscaffold_3G00229970 Rroxscaffold_3G00242860 Rroxscaffold_3G00242890 Rroxscaffold_3G00242900 Rroxscaffold_3G00248200 Rroxscaffold_4G00284550 Rroxscaffold_4G00288780 Rroxscaffold_4G00298620 Rroxscaffold_4G00298630 Rroxscaffold_4G00312420 Rroxscaffold_4G00320310 Rroxscaffold_4G00322220 Rroxscaffold_4G00323600 Rroxscaffold_4G00331830 Rroxscaffold_4G00332010 Rroxscaffold_4G00332020 Rroxscaffold_5G00344470 Rroxscaffold_5G00345310 Rroxscaffold_5G00356120 Rroxscaffold_5G00368700 Rroxscaffold_5G00379820 Rroxscaffold_5G00382480 Rroxscaffold_6G00395080 Rroxscaffold_6G00405520 Rroxscaffold_6G00428210 Rroxscaffold_7G00193460
rosa_samantha Rh7CG413200 Rh7DG284900

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB7I CCANNNNNTGG 2 cut(s) 55, 79
AclWI GGATC 1 cut(s) 179
AcsI RAATTY 2 cut(s) 232, 310
AfiI CCNNNNNNNGG 4 cut(s) 55, 79, 138, 368
AgsI TTSAA 2 cut(s) 13, 45
AloI GAACNNNNNNTCC 1 cut(s) 31
AluBI AGCT 1 cut(s) 328
AluI AGCT 1 cut(s) 328
Alw26I GTCTC 1 cut(s) 87
AlwI GGATC 1 cut(s) 179
AoxI GGCC 2 cut(s) 347, 359
ApoI RAATTY 2 cut(s) 232, 310
BauI CACGAG 1 cut(s) 35
BccI CCATC 1 cut(s) 154
BclI TGATCA 1 cut(s) 31
BcoDI GTCTC 1 cut(s) 87
BfaI CTAG 2 cut(s) 90, 366
BmsI GCATC 3 cut(s) 241, 307, 329
BsaJI CCNNGG 1 cut(s) 356
BsaXI ACNNNNNCTCC 1 cut(s) 29
Bsc4I CCNNNNNNNGG 4 cut(s) 55, 79, 138, 368
BseDI CCNNGG 1 cut(s) 356
BseLI CCNNNNNNNGG 4 cut(s) 55, 79, 138, 368
BshFI GGCC 2 cut(s) 349, 361
BslFI GGGAC 1 cut(s) 154
BslI CCNNNNNNNGG 4 cut(s) 55, 79, 138, 368
BsmAI GTCTC 1 cut(s) 87
BsmFI GGGAC 1 cut(s) 154
BsnI GGCC 2 cut(s) 349, 361
Bsp143I GATC 3 cut(s) 31, 133, 171
BspANI GGCC 2 cut(s) 349, 361
BspPI GGATC 1 cut(s) 179
BssECI CCNNGG 1 cut(s) 356
BssMI GATC 3 cut(s) 31, 133, 171
BssSI CACGAG 1 cut(s) 35
Bst2BI CACGAG 1 cut(s) 35
BstC8I GCNNGC 1 cut(s) 280
BstDSI CCRYGG 1 cut(s) 356
BstENI CCTNNNNNAGG 1 cut(s) 366
BstKTI GATC 3 cut(s) 34, 136, 174
BstMAI GTCTC 1 cut(s) 87
BstMBI GATC 3 cut(s) 31, 133, 171
BstMWI GCNNNNNNNGC 1 cut(s) 346
BstNSI RCATGY 1 cut(s) 305
BsuRI GGCC 2 cut(s) 349, 361
BtgI CCRYGG 1 cut(s) 356
Cac8I GCNNGC 1 cut(s) 280
CviAII CATG 4 cut(s) 100, 112, 175, 302
CviJI RGCY 9 cut(s) 26, 72, 83, 131, 229, 282, 328, 349, 361
CviKI_1 RGCY 9 cut(s) 26, 72, 83, 131, 229, 282, 328, 349, 361
DpnI GATC 3 cut(s) 33, 135, 173
DpnII GATC 3 cut(s) 31, 133, 171
EcoNI CCTNNNNNAGG 1 cut(s) 366
EcoT22I ATGCAT 1 cut(s) 322
FaeI CATG 4 cut(s) 103, 115, 178, 305
FaiI YATR 7 cut(s) 101, 108, 113, 176, 303, 308, 342
FaqI GGGAC 1 cut(s) 154
FatI CATG 4 cut(s) 99, 111, 174, 301
FbaI TGATCA 1 cut(s) 31
FspBI CTAG 2 cut(s) 90, 366
HaeIII GGCC 2 cut(s) 349, 361
Hin1II CATG 4 cut(s) 103, 115, 178, 305
HincII GTYRAC 1 cut(s) 185
HindII GTYRAC 1 cut(s) 185
HinfI GANTC 1 cut(s) 41
Hpy166II GTNNAC 2 cut(s) 185, 299
Hpy188I TCNGA 1 cut(s) 325
Hpy188III TCNNGA 4 cut(s) 29, 35, 90, 366
Hpy8I GTNNAC 2 cut(s) 185, 299
HpyAV CCTTC 2 cut(s) 229, 372
HpyCH4V TGCA 4 cut(s) 4, 163, 278, 320
HpyF10VI GCNNNNNNNGC 1 cut(s) 346
Hsp92II CATG 4 cut(s) 103, 115, 178, 305
Ksp22I TGATCA 1 cut(s) 31
Kzo9I GATC 3 cut(s) 31, 133, 171
LmnI GCTCC 1 cut(s) 325
LpnPI CCDG 1 cut(s) 288
LweI GCATC 3 cut(s) 241, 307, 329
MaeI CTAG 2 cut(s) 90, 366
MalI GATC 3 cut(s) 33, 135, 173
MboI GATC 3 cut(s) 31, 133, 171
MboII GAAGA 1 cut(s) 229
MfeI CAATTG 1 cut(s) 164
MluCI AATT 5 cut(s) 74, 158, 164, 232, 310
MnlI CCTC 6 cut(s) 16, 31, 162, 287, 360, 362
Mph1103I ATGCAT 1 cut(s) 322
MunI CAATTG 1 cut(s) 164
MwoI GCNNNNNNNGC 1 cut(s) 346
NdeII GATC 3 cut(s) 31, 133, 171
NlaIII CATG 4 cut(s) 103, 115, 178, 305
NsiI ATGCAT 1 cut(s) 322
NspI RCATGY 1 cut(s) 305
PfeI GAWTC 1 cut(s) 41
PflMI CCANNNNNTGG 2 cut(s) 55, 79
Sau3AI GATC 3 cut(s) 31, 133, 171
SetI ASST 4 cut(s) 298, 330, 347, 373
SfaNI GCATC 3 cut(s) 241, 307, 329
Sse9I AATT 5 cut(s) 74, 158, 164, 232, 310
SspI AATATT 1 cut(s) 212
SspMI CTAG 2 cut(s) 90, 366
TasI AATT 5 cut(s) 74, 158, 164, 232, 310
TfiI GAWTC 1 cut(s) 41
Van91I CCANNNNNTGG 2 cut(s) 55, 79
XagI CCTNNNNNAGG 1 cut(s) 366
XapI RAATTY 2 cut(s) 232, 310
XbaI TCTAGA 2 cut(s) 89, 365
XceI RCATGY 1 cut(s) 305
XspI CTAG 2 cut(s) 90, 366
Zsp2I ATGCAT 1 cut(s) 322
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.