Rmu_sc0014679.1_g000001

hydrolase activity, acting on ester bonds

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_multiflora
Rmu_sc0014679.1
OG0000314
Physical Location & Seq
Forward (+)
318 .. 851
534 bp
Loading structure...
UTR
Exon/CDS
Intron
Rmu_sc0014679.1_g000001.1.cds

Sequence Viewer

Length: 534 bp
atgacttcaaaaaaaaaggaatccattgatgatcagatggaaactcggccgcctgttgttcttccttcaaatttggaggcaaacatgtcaggtcaaaatttgcaaaatgtcaaggagaatgaccatcacatggttgagtgtaaaattaatgagactattcgtatggatatggttctcgaaaagaaagctgacctcaacaattcgcagcttgatgaagatcttaatcttctagccaaagaatgtcggctcgctgagcgtaatgtcgtcaatagtgatgatcatccaattcaagatgtcatgcatgttgacatgattattggaaacaaagctgacttggagaagccactatcagagaaagtggaaacaagtacatttgaagagcatataatttcggcccacatgaaggccgaaaagaaaacaaatctcaatcattccctttggtcaatggagatcggcctcggaaaatttgaaattcatgctgagaatacaaaatgttcaaaacttggggtgaaacattgttggccacctccataa
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
ko00130 ko01100 ko01110 map00130 map01100 map01110
Pfam Domains
Protein Families
Abhydrolase_1 Abhydrolase_6 MR_MLE_C

Protein Analysis

177

Amino Acids

20.18

Weight (kDa)

5.46

Isoelectric Point (pI)

40.61

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0000314)

Species Orthologous Gene IDs
fragaria_vesca FvH4_1g02272 FvH4_1g22661 FvH4_2g10242 FvH4_2g34051 FvH4_3g19221 FvH4_3g29651 FvH4_3g30891 FvH4_4g11061 FvH4_5g09250 FvH4_5g15302 FvH4_5g15303 FvH4_5g15304 FvH4_5g28521 FvH4_6g23591 FvH4_7g05710 FvH4_7g19520
pyrus_communis pycom07g06330
rosa_chinensis RchiOBHm_Chr5g0027301 RchiOBHm_Chr6g0251451 RchiOBHm_Chr6g0274861
rosa_laevigata RLG00000007850
rosa_multiflora Rmu_co8230721.1_g000001 Rmu_sc0000271.1_g000027 Rmu_sc0000303.1_g000024 Rmu_sc0000368.1_g000024 Rmu_sc0000621.1_g000037 Rmu_sc0000693.1_g000081 Rmu_sc0001229.1_g000006 Rmu_sc0001373.1_g000003 Rmu_sc0001459.1_g000001 Rmu_sc0001744.1_g000002 Rmu_sc0001909.1_g000002 Rmu_sc0002053.1_g000012 Rmu_sc0002060.1_g000015 Rmu_sc0002119.1_g000036 Rmu_sc0002177.1_g000007 Rmu_sc0002822.1_g000024 Rmu_sc0002965.1_g000015 Rmu_sc0003363.1_g000051 Rmu_sc0003500.1_g000013 Rmu_sc0004191.1_g000020 Rmu_sc0004904.1_g000032 Rmu_sc0005325.1_g000008 Rmu_sc0005947.1_g000040 Rmu_sc0006475.1_g000001 Rmu_sc0006522.1_g000019 Rmu_sc0007102.1_g000005 Rmu_sc0007810.1_g000003 Rmu_sc0008339.1_g000025 Rmu_sc0008698.1_g000004 Rmu_sc0009313.1_g000006 Rmu_sc0009850.1_g000006 Rmu_sc0010598.1_g000003 Rmu_sc0011162.1_g000002 Rmu_sc0011824.1_g000004 Rmu_sc0011900.1_g000010 Rmu_sc0012291.1_g000006 Rmu_sc0012619.1_g000003 Rmu_sc0014679.1_g000001 Rmu_sc0019053.1_g000001 Rmu_sc0021462.1_g000003 Rmu_sc0024172.1_g000001 Rmu_sc0024173.1_g000001 Rmu_ssc0000052.1_g000016 Rmu_ssc0000392.1_g000010 Rmu_ssc0000421.1_g000062 Rmu_ssc0000479.1_g000006
rosa_roxburghii Rroxscaffold_153G00436600 Rroxscaffold_1G00008580 Rroxscaffold_1G00016770 Rroxscaffold_1G00029550 Rroxscaffold_1G00036450 Rroxscaffold_1G00040410 Rroxscaffold_1G00047110 Rroxscaffold_1G00060570 Rroxscaffold_2G00081500 Rroxscaffold_2G00081510 Rroxscaffold_2G00086080 Rroxscaffold_2G00099620 Rroxscaffold_2G00099630 Rroxscaffold_2G00099640 Rroxscaffold_2G00109170 Rroxscaffold_2G00127750 Rroxscaffold_2G00128590 Rroxscaffold_2G00130780 Rroxscaffold_2G00131040 Rroxscaffold_2G00143160 Rroxscaffold_3G00229280 Rroxscaffold_3G00229290 Rroxscaffold_3G00229970 Rroxscaffold_3G00242860 Rroxscaffold_3G00242890 Rroxscaffold_3G00242900 Rroxscaffold_3G00248200 Rroxscaffold_4G00284550 Rroxscaffold_4G00288780 Rroxscaffold_4G00298620 Rroxscaffold_4G00298630 Rroxscaffold_4G00312420 Rroxscaffold_4G00320310 Rroxscaffold_4G00322220 Rroxscaffold_4G00323600 Rroxscaffold_4G00331830 Rroxscaffold_4G00332010 Rroxscaffold_4G00332020 Rroxscaffold_5G00344470 Rroxscaffold_5G00345310 Rroxscaffold_5G00356120 Rroxscaffold_5G00368700 Rroxscaffold_5G00379820 Rroxscaffold_5G00382480 Rroxscaffold_6G00395080 Rroxscaffold_6G00405520 Rroxscaffold_6G00428210 Rroxscaffold_7G00193460
rosa_samantha Rh7CG413200 Rh7DG284900

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB7I CCANNNNNTGG 1 cut(s) 130
AciI CCGC 1 cut(s) 50
AcoI YGGCCR 2 cut(s) 47, 521
AcsI RAATTY 4 cut(s) 70, 97, 464, 471
AfaI GTAC 1 cut(s) 370
AfiI CCNNNNNNNGG 2 cut(s) 130, 403
AflIII ACRYGT 1 cut(s) 84
AgsI TTSAA 6 cut(s) 9, 69, 290, 377, 470, 498
AluBI AGCT 3 cut(s) 188, 208, 329
AluI AGCT 3 cut(s) 188, 208, 329
Alw26I GTCTC 1 cut(s) 146
AoxI GGCC 5 cut(s) 47, 393, 405, 454, 521
ApeKI GCWGC 1 cut(s) 205
ApoI RAATTY 4 cut(s) 70, 97, 464, 471
AseI ATTAAT 1 cut(s) 147
AspS9I GGNCC 1 cut(s) 394
AsuHPI GGTGA 1 cut(s) 520
BalI TGGCCA 1 cut(s) 523
BbvI GCAGC 1 cut(s) 217
BccI CCATC 2 cut(s) 31, 132
BclI TGATCA 2 cut(s) 31, 277
BcoDI GTCTC 1 cut(s) 146
BfaI CTAG 1 cut(s) 230
BglII AGATCT 1 cut(s) 217
BisI GCNGC 2 cut(s) 50, 206
BlpI GCTNAGC 1 cut(s) 252
BlsI GCNGC 2 cut(s) 51, 207
BmgT120I GGNCC 1 cut(s) 394
Bpu1102I GCTNAGC 1 cut(s) 252
BsaBI GATNNNNATC 3 cut(s) 216, 222, 279
BsaJI CCNNGG 1 cut(s) 457
Bsc4I CCNNNNNNNGG 2 cut(s) 130, 403
Bse8I GATNNNNATC 3 cut(s) 216, 222, 279
BseDI CCNNGG 1 cut(s) 457
BseGI GGATG 1 cut(s) 280
BseJI GATNNNNATC 3 cut(s) 216, 222, 279
BseLI CCNNNNNNNGG 2 cut(s) 130, 403
BseMII CTCAG 2 cut(s) 243, 471
BseX3I CGGCCG 1 cut(s) 47
BseXI GCAGC 1 cut(s) 217
Bsh1285I CGRYCG 1 cut(s) 50
BshFI GGCC 5 cut(s) 49, 395, 407, 456, 523
BsiEI CGRYCG 1 cut(s) 50
BslI CCNNNNNNNGG 2 cut(s) 130, 403
BsmAI GTCTC 1 cut(s) 146
BsnI GGCC 5 cut(s) 49, 395, 407, 456, 523
Bsp143I GATC 4 cut(s) 31, 217, 277, 450
Bsp1720I GCTNAGC 1 cut(s) 252
BspACI CCGC 1 cut(s) 50
BspANI GGCC 5 cut(s) 49, 395, 407, 456, 523
BspCNI CTCAG 2 cut(s) 244, 472
BspQI GCTCTTC 1 cut(s) 372
BssECI CCNNGG 1 cut(s) 457
BssMI GATC 4 cut(s) 31, 217, 277, 450
Bst6I CTCTTC 1 cut(s) 372
BstC8I GCNNGC 1 cut(s) 249
BstDEI CTNAG 2 cut(s) 252, 480
BstF5I GGATG 1 cut(s) 280
BstKTI GATC 4 cut(s) 34, 220, 280, 453
BstMAI GTCTC 1 cut(s) 146
BstMBI GATC 4 cut(s) 31, 217, 277, 450
BstMCI CGRYCG 1 cut(s) 50
BstMWI GCNNNNNNNGC 1 cut(s) 253
BstNSI RCATGY 2 cut(s) 88, 305
BstV1I GCAGC 1 cut(s) 217
BstX2I RGATCY 1 cut(s) 217
BstYI RGATCY 1 cut(s) 217
BstZI CGGCCG 1 cut(s) 47
BsuRI GGCC 5 cut(s) 49, 395, 407, 456, 523
BtsCI GGATG 1 cut(s) 280
Cac8I GCNNGC 1 cut(s) 249
Cfr13I GGNCC 1 cut(s) 394
Csp6I GTAC 1 cut(s) 369
CviAII CATG 7 cut(s) 85, 130, 298, 302, 310, 400, 476
CviQI GTAC 1 cut(s) 369
DdeI CTNAG 2 cut(s) 252, 480
DpnI GATC 4 cut(s) 33, 219, 279, 452
DpnII GATC 4 cut(s) 31, 217, 277, 450
EaeI YGGCCR 2 cut(s) 47, 521
EagI CGGCCG 1 cut(s) 47
Eam1104I CTCTTC 1 cut(s) 372
EarI CTCTTC 1 cut(s) 372
EclXI CGGCCG 1 cut(s) 47
Eco52I CGGCCG 1 cut(s) 47
EcoT22I ATGCAT 1 cut(s) 303
FaeI CATG 7 cut(s) 88, 133, 301, 305, 313, 403, 479
FatI CATG 7 cut(s) 84, 129, 297, 301, 309, 399, 475
FbaI TGATCA 2 cut(s) 31, 277
Fnu4HI GCNGC 2 cut(s) 50, 206
FokI GGATG 1 cut(s) 267
Fsp4HI GCNGC 2 cut(s) 50, 206
FspBI CTAG 1 cut(s) 230
GluI GCNGC 2 cut(s) 50, 206
HaeIII GGCC 5 cut(s) 49, 395, 407, 456, 523
Hin1II CATG 7 cut(s) 88, 133, 301, 305, 313, 403, 479
HincII GTYRAC 1 cut(s) 307
HindII GTYRAC 1 cut(s) 307
HinfI GANTC 1 cut(s) 20
HphI GGTGA 1 cut(s) 520
Hpy166II GTNNAC 1 cut(s) 307
Hpy188I TCNGA 3 cut(s) 36, 352, 461
Hpy188III TCNNGA 2 cut(s) 176, 290
Hpy8I GTNNAC 1 cut(s) 307
HpyAV CCTTC 2 cut(s) 75, 397
HpyCH4V TGCA 2 cut(s) 103, 301
HpyF10VI GCNNNNNNNGC 1 cut(s) 253
HpyF3I CTNAG 2 cut(s) 252, 480
Hsp92II CATG 7 cut(s) 88, 133, 301, 305, 313, 403, 479
Ksp22I TGATCA 2 cut(s) 31, 277
Kzo9I GATC 4 cut(s) 31, 217, 277, 450
LguI GCTCTTC 1 cut(s) 372
LpnPI CCDG 2 cut(s) 66, 75
Lsp1109I GCAGC 1 cut(s) 217
MaeI CTAG 1 cut(s) 230
MalI GATC 4 cut(s) 33, 219, 279, 452
MboI GATC 4 cut(s) 31, 217, 277, 450
MboII GAAGA 4 cut(s) 53, 218, 227, 389
MflI RGATCY 1 cut(s) 217
MlsI TGGCCA 1 cut(s) 523
MluCI AATT 8 cut(s) 70, 97, 144, 199, 285, 387, 464, 471
MluNI TGGCCA 1 cut(s) 523
MnlI CCTC 3 cut(s) 70, 203, 467
Mox20I TGGCCA 1 cut(s) 523
Mph1103I ATGCAT 1 cut(s) 303
MscI TGGCCA 1 cut(s) 523
MseI TTAA 2 cut(s) 147, 222
Msp20I TGGCCA 1 cut(s) 523
MwoI GCNNNNNNNGC 1 cut(s) 253
NdeII GATC 4 cut(s) 31, 217, 277, 450
NlaIII CATG 7 cut(s) 88, 133, 301, 305, 313, 403, 479
NmeAIII GCCGAG 1 cut(s) 25
NsiI ATGCAT 1 cut(s) 303
NspI RCATGY 2 cut(s) 88, 305
PciI ACATGT 1 cut(s) 84
PciSI GCTCTTC 1 cut(s) 372
PfeI GAWTC 1 cut(s) 20
PflMI CCANNNNNTGG 1 cut(s) 130
PkrI GCNGC 2 cut(s) 51, 207
PscI ACATGT 1 cut(s) 84
PshBI ATTAAT 1 cut(s) 147
PspPI GGNCC 1 cut(s) 394
PsuI RGATCY 1 cut(s) 217
RsaI GTAC 1 cut(s) 370
RsaNI GTAC 1 cut(s) 369
SapI GCTCTTC 1 cut(s) 372
SaqAI TTAA 2 cut(s) 147, 222
SatI GCNGC 2 cut(s) 50, 206
Sau3AI GATC 4 cut(s) 31, 217, 277, 450
Sau96I GGNCC 1 cut(s) 394
SetI ASST 6 cut(s) 94, 190, 195, 210, 331, 529
Sse9I AATT 8 cut(s) 70, 97, 144, 199, 285, 387, 464, 471
SsiI CCGC 1 cut(s) 50
SspMI CTAG 1 cut(s) 230
TaqI TCGA 1 cut(s) 177
TasI AATT 8 cut(s) 70, 97, 144, 199, 285, 387, 464, 471
TatI WGTACW 1 cut(s) 368
TauI GCSGC 1 cut(s) 52
TfiI GAWTC 1 cut(s) 20
Tru1I TTAA 2 cut(s) 147, 222
Tru9I TTAA 2 cut(s) 147, 222
TseI GCWGC 1 cut(s) 205
TspDTI ATGAA 3 cut(s) 228, 416, 464
Van91I CCANNNNNTGG 1 cut(s) 130
VspI ATTAAT 1 cut(s) 147
XapI RAATTY 4 cut(s) 70, 97, 464, 471
XceI RCATGY 2 cut(s) 88, 305
XspI CTAG 1 cut(s) 230
Zsp2I ATGCAT 1 cut(s) 303
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.