Rroxscaffold_2G00081510

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_roxburghii
GWHEROQ00000002
OG0000314
Physical Location & Seq
Reverse (-)
4551410 .. 4551844
435 bp
Loading structure...
UTR
Exon/CDS
Intron
Rroxscaffold_2G00081510.1

Sequence Viewer

Length: 435 bp
ATGGCCAATGTTGCCACCATTGGCGATACTACGAAAGAGAGGCTTTCGTTCGAAGCCTATCCCGCAGGAGCGTCTTTCGAGGTCATCATGGAAAATATCGAGAACCATGGTAAAAAGATAGTCGCCGACTTTGACAGGGAAATCGCGAGGACAAACCGGCTCATACGCGAACCGGACGAGAATGCTCGAAAGCTAAAGAGCAAAGGGAGCAGCGCGCTCGAGAAGCCGAACGGCGCAATCGAGAGCTTACCCGCAGGAGGAAACAGAAGACCAAGAGTGGGAAAAACAATATCGGCATATCCTGGATTGTATAGTGACTCTGCGCAAGACCGCATCGGAGTTCGCGACCTAGCGCAAGGAAGATTCCATCTTGGCTACTGGTGCCGGTTCGCATCAAAGCGAATTGGAACCCGCTTGCAAAGAGGTGGTTTTTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

144

Amino Acids

15.94

Weight (kDa)

9.93

Isoelectric Point (pI)

29.55

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0000314)

Species Orthologous Gene IDs
fragaria_vesca FvH4_1g02272 FvH4_1g22661 FvH4_2g10242 FvH4_2g34051 FvH4_3g19221 FvH4_3g29651 FvH4_3g30891 FvH4_4g11061 FvH4_5g09250 FvH4_5g15302 FvH4_5g15303 FvH4_5g15304 FvH4_5g28521 FvH4_6g23591 FvH4_7g05710 FvH4_7g19520
pyrus_communis pycom07g06330
rosa_chinensis RchiOBHm_Chr5g0027301 RchiOBHm_Chr6g0251451 RchiOBHm_Chr6g0274861
rosa_laevigata RLG00000007850
rosa_multiflora Rmu_co8230721.1_g000001 Rmu_sc0000271.1_g000027 Rmu_sc0000303.1_g000024 Rmu_sc0000368.1_g000024 Rmu_sc0000621.1_g000037 Rmu_sc0000693.1_g000081 Rmu_sc0001229.1_g000006 Rmu_sc0001373.1_g000003 Rmu_sc0001459.1_g000001 Rmu_sc0001744.1_g000002 Rmu_sc0001909.1_g000002 Rmu_sc0002053.1_g000012 Rmu_sc0002060.1_g000015 Rmu_sc0002119.1_g000036 Rmu_sc0002177.1_g000007 Rmu_sc0002822.1_g000024 Rmu_sc0002965.1_g000015 Rmu_sc0003363.1_g000051 Rmu_sc0003500.1_g000013 Rmu_sc0004191.1_g000020 Rmu_sc0004904.1_g000032 Rmu_sc0005325.1_g000008 Rmu_sc0005947.1_g000040 Rmu_sc0006475.1_g000001 Rmu_sc0006522.1_g000019 Rmu_sc0007102.1_g000005 Rmu_sc0007810.1_g000003 Rmu_sc0008339.1_g000025 Rmu_sc0008698.1_g000004 Rmu_sc0009313.1_g000006 Rmu_sc0009850.1_g000006 Rmu_sc0010598.1_g000003 Rmu_sc0011162.1_g000002 Rmu_sc0011824.1_g000004 Rmu_sc0011900.1_g000010 Rmu_sc0012291.1_g000006 Rmu_sc0012619.1_g000003 Rmu_sc0014679.1_g000001 Rmu_sc0019053.1_g000001 Rmu_sc0021462.1_g000003 Rmu_sc0024172.1_g000001 Rmu_sc0024173.1_g000001 Rmu_ssc0000052.1_g000016 Rmu_ssc0000392.1_g000010 Rmu_ssc0000421.1_g000062 Rmu_ssc0000479.1_g000006
rosa_roxburghii Rroxscaffold_153G00436600 Rroxscaffold_1G00008580 Rroxscaffold_1G00016770 Rroxscaffold_1G00029550 Rroxscaffold_1G00036450 Rroxscaffold_1G00040410 Rroxscaffold_1G00047110 Rroxscaffold_1G00060570 Rroxscaffold_2G00081500 Rroxscaffold_2G00081510 Rroxscaffold_2G00086080 Rroxscaffold_2G00099620 Rroxscaffold_2G00099630 Rroxscaffold_2G00099640 Rroxscaffold_2G00109170 Rroxscaffold_2G00127750 Rroxscaffold_2G00128590 Rroxscaffold_2G00130780 Rroxscaffold_2G00131040 Rroxscaffold_2G00143160 Rroxscaffold_3G00229280 Rroxscaffold_3G00229290 Rroxscaffold_3G00229970 Rroxscaffold_3G00242860 Rroxscaffold_3G00242890 Rroxscaffold_3G00242900 Rroxscaffold_3G00248200 Rroxscaffold_4G00284550 Rroxscaffold_4G00288780 Rroxscaffold_4G00298620 Rroxscaffold_4G00298630 Rroxscaffold_4G00312420 Rroxscaffold_4G00320310 Rroxscaffold_4G00322220 Rroxscaffold_4G00323600 Rroxscaffold_4G00331830 Rroxscaffold_4G00332010 Rroxscaffold_4G00332020 Rroxscaffold_5G00344470 Rroxscaffold_5G00345310 Rroxscaffold_5G00356120 Rroxscaffold_5G00368700 Rroxscaffold_5G00379820 Rroxscaffold_5G00382480 Rroxscaffold_6G00395080 Rroxscaffold_6G00405520 Rroxscaffold_6G00428210 Rroxscaffold_7G00193460
rosa_samantha Rh7CG413200 Rh7DG284900

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc16I TGCGCA 1 cut(s) 324
AccB1I GGYRCC 1 cut(s) 381
AccII CGCG 4 cut(s) 146, 168, 215, 345
AciI CCGC 4 cut(s) 63, 252, 331, 412
AcoI YGGCCR 1 cut(s) 3
AfiI CCNNNNNNNGG 2 cut(s) 257, 278
AjnI CCWGG 1 cut(s) 301
AluBI AGCT 2 cut(s) 193, 246
AluI AGCT 2 cut(s) 193, 246
Ama87I CYCGRG 1 cut(s) 218
AoxI GGCC 1 cut(s) 3
ApeKI GCWGC 1 cut(s) 210
AspLEI GCGC 5 cut(s) 215, 217, 236, 325, 355
AsuII TTCGAA 1 cut(s) 51
AvaI CYCGRG 1 cut(s) 218
BalI TGGCCA 1 cut(s) 5
BanI GGYRCC 1 cut(s) 381
BbsI GAAGAC 1 cut(s) 274
BbvI GCAGC 1 cut(s) 222
BccI CCATC 1 cut(s) 375
BceAI ACGGC 1 cut(s) 247
BcgI CGANNNNNNTGC 2 cut(s) 199, 233
BciT130I CCWGG 1 cut(s) 303
BfaI CTAG 1 cut(s) 350
BisI GCNGC 1 cut(s) 211
BlsI GCNGC 1 cut(s) 212
Bme1390I CCNGG 1 cut(s) 303
BmeT110I CYCGRG 1 cut(s) 218
BmiI GGNNCC 2 cut(s) 383, 409
BmrFI CCNGG 1 cut(s) 303
BmsI GCATC 2 cut(s) 342, 401
BpiI GAAGAC 1 cut(s) 274
Bpu14I TTCGAA 1 cut(s) 51
BsaJI CCNNGG 1 cut(s) 106
BsaWI WCCGGW 1 cut(s) 172
Bsc4I CCNNNNNNNGG 2 cut(s) 257, 278
Bse118I RCCGGY 2 cut(s) 156, 384
Bse1I ACTGG 1 cut(s) 383
BseBI CCWGG 1 cut(s) 303
BseDI CCNNGG 1 cut(s) 106
BseLI CCNNNNNNNGG 2 cut(s) 257, 278
BseNI ACTGG 1 cut(s) 383
BsePI GCGCGC 1 cut(s) 213
BseXI GCAGC 1 cut(s) 222
Bsh1236I CGCG 4 cut(s) 146, 168, 215, 345
BshFI GGCC 1 cut(s) 5
BshNI GGYRCC 1 cut(s) 381
BsiHKCI CYCGRG 1 cut(s) 218
BsiSI CCGG 3 cut(s) 157, 173, 385
BslI CCNNNNNNNGG 2 cut(s) 257, 278
BsmI GAATGC 1 cut(s) 187
BsnI GGCC 1 cut(s) 5
BsoBI CYCGRG 1 cut(s) 218
Bsp119I TTCGAA 1 cut(s) 51
Bsp19I CCATGG 1 cut(s) 106
Bsp68I TCGCGA 2 cut(s) 146, 345
BspACI CCGC 4 cut(s) 63, 252, 331, 412
BspANI GGCC 1 cut(s) 5
BspFNI CGCG 4 cut(s) 146, 168, 215, 345
BspLI GGNNCC 2 cut(s) 383, 409
BspT104I TTCGAA 1 cut(s) 51
BspT107I GGYRCC 1 cut(s) 381
BsrFI RCCGGY 2 cut(s) 156, 384
BsrI ACTGG 1 cut(s) 383
BssAI RCCGGY 2 cut(s) 156, 384
BssECI CCNNGG 1 cut(s) 106
BssHII GCGCGC 1 cut(s) 213
BssT1I CCWWGG 1 cut(s) 106
Bst2UI CCWGG 1 cut(s) 303
BstBI TTCGAA 1 cut(s) 51
BstC8I GCNNGC 2 cut(s) 215, 416
BstDSI CCRYGG 1 cut(s) 106
BstFNI CGCG 4 cut(s) 146, 168, 215, 345
BstHHI GCGC 5 cut(s) 215, 217, 236, 325, 355
BstMWI GCNNNNNNNGC 5 cut(s) 11, 62, 207, 223, 381
BstNI CCWGG 1 cut(s) 303
BstSCI CCNGG 1 cut(s) 301
BstUI CGCG 4 cut(s) 146, 168, 215, 345
BstV1I GCAGC 1 cut(s) 222
BstV2I GAAGAC 1 cut(s) 274
BsuRI GGCC 1 cut(s) 5
BtgI CCRYGG 1 cut(s) 106
BtuMI TCGCGA 2 cut(s) 146, 345
Cac8I GCNNGC 2 cut(s) 215, 416
CfoI GCGC 5 cut(s) 215, 217, 236, 325, 355
Cfr10I RCCGGY 2 cut(s) 156, 384
CseI GACGC 1 cut(s) 60
CviAII CATG 2 cut(s) 88, 107
CviJI RGCY 8 cut(s) 5, 43, 56, 160, 193, 226, 246, 375
CviKI_1 RGCY 8 cut(s) 5, 43, 56, 160, 193, 226, 246, 375
EaeI YGGCCR 1 cut(s) 3
Eco130I CCWWGG 1 cut(s) 106
Eco88I CYCGRG 1 cut(s) 218
EcoRII CCWGG 1 cut(s) 301
EcoT14I CCWWGG 1 cut(s) 106
ErhI CCWWGG 1 cut(s) 106
FaeI CATG 2 cut(s) 91, 110
FaiI YATR 5 cut(s) 89, 108, 164, 298, 312
FalI AAGNNNNNCTT 2 cut(s) 27, 59
FatI CATG 2 cut(s) 87, 106
FauI CCCGC 3 cut(s) 70, 259, 419
Fnu4HI GCNGC 1 cut(s) 211
Fsp4HI GCNGC 1 cut(s) 211
FspBI CTAG 1 cut(s) 350
FspI TGCGCA 1 cut(s) 324
GlaI GCGC 5 cut(s) 214, 216, 235, 324, 354
GluI GCNGC 1 cut(s) 211
HaeIII GGCC 1 cut(s) 5
HapII CCGG 3 cut(s) 157, 173, 385
HgaI GACGC 1 cut(s) 60
HhaI GCGC 5 cut(s) 215, 217, 236, 325, 355
Hin1II CATG 2 cut(s) 91, 110
Hin6I GCGC 5 cut(s) 213, 215, 234, 323, 353
HinP1I GCGC 5 cut(s) 213, 215, 234, 323, 353
HinfI GANTC 2 cut(s) 317, 363
HpaII CCGG 3 cut(s) 157, 173, 385
Hpy188I TCNGA 1 cut(s) 338
Hpy188III TCNNGA 5 cut(s) 100, 145, 220, 241, 344
HpyCH4V TGCA 1 cut(s) 418
HpyF10VI GCNNNNNNNGC 5 cut(s) 11, 62, 207, 223, 381
Hsp92II CATG 2 cut(s) 91, 110
HspAI GCGC 5 cut(s) 213, 215, 234, 323, 353
LmnI GCTCC 2 cut(s) 68, 207
LpnPI CCDG 9 cut(s) 51, 121, 170, 186, 240, 288, 315, 364, 398
Lsp1109I GCAGC 1 cut(s) 222
LweI GCATC 2 cut(s) 342, 401
MaeI CTAG 1 cut(s) 350
MaeIII GTNAC 1 cut(s) 314
MboII GAAGA 2 cut(s) 279, 372
MlsI TGGCCA 1 cut(s) 5
MluCI AATT 1 cut(s) 402
MluNI TGGCCA 1 cut(s) 5
MlyI GAGTC 1 cut(s) 311
MnlI CCTC 5 cut(s) 33, 73, 141, 251, 416
Mox20I TGGCCA 1 cut(s) 5
MscI TGGCCA 1 cut(s) 5
Msp20I TGGCCA 1 cut(s) 5
MspI CCGG 3 cut(s) 157, 173, 385
MspR9I CCNGG 1 cut(s) 303
Mva1269I GAATGC 1 cut(s) 187
MvaI CCWGG 1 cut(s) 303
MvnI CGCG 4 cut(s) 146, 168, 215, 345
MwoI GCNNNNNNNGC 5 cut(s) 11, 62, 207, 223, 381
NcoI CCATGG 1 cut(s) 106
NlaIII CATG 2 cut(s) 91, 110
NlaIV GGNNCC 2 cut(s) 383, 409
NmuCI GTSAC 1 cut(s) 314
NruI TCGCGA 2 cut(s) 146, 345
NsbI TGCGCA 1 cut(s) 324
NspV TTCGAA 1 cut(s) 51
PaeR7I CTCGAG 1 cut(s) 218
PauI GCGCGC 1 cut(s) 213
PcsI WCGNNNNNNNCGW 2 cut(s) 237, 342
PctI GAATGC 1 cut(s) 187
PfeI GAWTC 1 cut(s) 363
PfoI TCCNGGA 1 cut(s) 301
PkrI GCNGC 1 cut(s) 212
PleI GAGTC 1 cut(s) 311
PpsI GAGTC 1 cut(s) 311
Psp6I CCWGG 1 cut(s) 301
PspGI CCWGG 1 cut(s) 301
PspN4I GGNNCC 2 cut(s) 383, 409
PteI GCGCGC 1 cut(s) 213
RruI TCGCGA 2 cut(s) 146, 345
SatI GCNGC 1 cut(s) 211
SchI GAGTC 1 cut(s) 311
ScrFI CCNGG 1 cut(s) 303
SetI ASST 5 cut(s) 84, 195, 248, 351, 427
SfaNI GCATC 2 cut(s) 342, 401
Sfr274I CTCGAG 1 cut(s) 218
SfuI TTCGAA 1 cut(s) 51
SlaI CTCGAG 1 cut(s) 218
SmlI CTYRAG 1 cut(s) 218
SmoI CTYRAG 1 cut(s) 218
Sse9I AATT 1 cut(s) 402
SsiI CCGC 4 cut(s) 63, 252, 331, 412
SspMI CTAG 1 cut(s) 350
StyD4I CCNGG 1 cut(s) 301
StyI CCWWGG 1 cut(s) 106
TaqI TCGA 6 cut(s) 51, 78, 99, 187, 219, 240
TasI AATT 1 cut(s) 402
TfiI GAWTC 1 cut(s) 363
TseFI GTSAC 1 cut(s) 314
TseI GCWGC 1 cut(s) 210
Tsp45I GTSAC 1 cut(s) 314
XhoI CTCGAG 1 cut(s) 218
XspI CTAG 1 cut(s) 350
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.