Rmu_sc0011824.1_g000004

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_multiflora
Rmu_sc0011824.1
OG0000314
Physical Location & Seq
Reverse (-)
13620 .. 14150
531 bp
Loading structure...
UTR
Exon/CDS
Intron
Rmu_sc0011824.1_g000004.1.cds

Sequence Viewer

Length: 531 bp
atgcctgtttttcttaataagaagaagttcaaattcctaaacttctcaaagcgcaaagcctccagttacacgtcgcataaaactgatgatgacgctgctgctgcagatgaagaggcgacgatagaaggctatgtgcccattcccattccagagaatgcgagcatagaagagcggcttgatatccttcaaaagaattctaccgcataccatgagaatatgagaaaagccctcacggaggaccgtcgacggctcgatgagttcatgatttcggtcaagaggctcgagttgggggcacaacaaacacaaggcaaattggaacgtcaagaacctgctcgcgaagaggtcgcttctgagactaacttgcctataggtggcaatcaacctaagggtctcattggtgagtcacagccttacacagagcctgtgcatggaaaaggtcatcaacaagattgttcttctgacaatacaattgtctctgaacaaatatctgatttctccactgatcaagccaaatacgtggctactgattag
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

176

Amino Acids

19.77

Weight (kDa)

5.21

Isoelectric Point (pI)

55.01

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0000314)

Species Orthologous Gene IDs
fragaria_vesca FvH4_1g02272 FvH4_1g22661 FvH4_2g10242 FvH4_2g34051 FvH4_3g19221 FvH4_3g29651 FvH4_3g30891 FvH4_4g11061 FvH4_5g09250 FvH4_5g15302 FvH4_5g15303 FvH4_5g15304 FvH4_5g28521 FvH4_6g23591 FvH4_7g05710 FvH4_7g19520
pyrus_communis pycom07g06330
rosa_chinensis RchiOBHm_Chr5g0027301 RchiOBHm_Chr6g0251451 RchiOBHm_Chr6g0274861
rosa_laevigata RLG00000007850
rosa_multiflora Rmu_co8230721.1_g000001 Rmu_sc0000271.1_g000027 Rmu_sc0000303.1_g000024 Rmu_sc0000368.1_g000024 Rmu_sc0000621.1_g000037 Rmu_sc0000693.1_g000081 Rmu_sc0001229.1_g000006 Rmu_sc0001373.1_g000003 Rmu_sc0001459.1_g000001 Rmu_sc0001744.1_g000002 Rmu_sc0001909.1_g000002 Rmu_sc0002053.1_g000012 Rmu_sc0002060.1_g000015 Rmu_sc0002119.1_g000036 Rmu_sc0002177.1_g000007 Rmu_sc0002822.1_g000024 Rmu_sc0002965.1_g000015 Rmu_sc0003363.1_g000051 Rmu_sc0003500.1_g000013 Rmu_sc0004191.1_g000020 Rmu_sc0004904.1_g000032 Rmu_sc0005325.1_g000008 Rmu_sc0005947.1_g000040 Rmu_sc0006475.1_g000001 Rmu_sc0006522.1_g000019 Rmu_sc0007102.1_g000005 Rmu_sc0007810.1_g000003 Rmu_sc0008339.1_g000025 Rmu_sc0008698.1_g000004 Rmu_sc0009313.1_g000006 Rmu_sc0009850.1_g000006 Rmu_sc0010598.1_g000003 Rmu_sc0011162.1_g000002 Rmu_sc0011824.1_g000004 Rmu_sc0011900.1_g000010 Rmu_sc0012291.1_g000006 Rmu_sc0012619.1_g000003 Rmu_sc0014679.1_g000001 Rmu_sc0019053.1_g000001 Rmu_sc0021462.1_g000003 Rmu_sc0024172.1_g000001 Rmu_sc0024173.1_g000001 Rmu_ssc0000052.1_g000016 Rmu_ssc0000392.1_g000010 Rmu_ssc0000421.1_g000062 Rmu_ssc0000479.1_g000006
rosa_roxburghii Rroxscaffold_153G00436600 Rroxscaffold_1G00008580 Rroxscaffold_1G00016770 Rroxscaffold_1G00029550 Rroxscaffold_1G00036450 Rroxscaffold_1G00040410 Rroxscaffold_1G00047110 Rroxscaffold_1G00060570 Rroxscaffold_2G00081500 Rroxscaffold_2G00081510 Rroxscaffold_2G00086080 Rroxscaffold_2G00099620 Rroxscaffold_2G00099630 Rroxscaffold_2G00099640 Rroxscaffold_2G00109170 Rroxscaffold_2G00127750 Rroxscaffold_2G00128590 Rroxscaffold_2G00130780 Rroxscaffold_2G00131040 Rroxscaffold_2G00143160 Rroxscaffold_3G00229280 Rroxscaffold_3G00229290 Rroxscaffold_3G00229970 Rroxscaffold_3G00242860 Rroxscaffold_3G00242890 Rroxscaffold_3G00242900 Rroxscaffold_3G00248200 Rroxscaffold_4G00284550 Rroxscaffold_4G00288780 Rroxscaffold_4G00298620 Rroxscaffold_4G00298630 Rroxscaffold_4G00312420 Rroxscaffold_4G00320310 Rroxscaffold_4G00322220 Rroxscaffold_4G00323600 Rroxscaffold_4G00331830 Rroxscaffold_4G00332010 Rroxscaffold_4G00332020 Rroxscaffold_5G00344470 Rroxscaffold_5G00345310 Rroxscaffold_5G00356120 Rroxscaffold_5G00368700 Rroxscaffold_5G00379820 Rroxscaffold_5G00382480 Rroxscaffold_6G00395080 Rroxscaffold_6G00405520 Rroxscaffold_6G00428210 Rroxscaffold_7G00193460
rosa_samantha Rh7CG413200 Rh7DG284900

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc36I ACCTGC 1 cut(s) 337
AccBSI CCGCTC 1 cut(s) 172
AccI GTMKAC 1 cut(s) 244
AccII CGCG 1 cut(s) 336
AciI CCGC 2 cut(s) 172, 201
AcsI RAATTY 2 cut(s) 32, 193
AfiI CCNNNNNNNGG 3 cut(s) 235, 371, 428
AflIII ACRYGT 1 cut(s) 69
AgsI TTSAA 2 cut(s) 31, 188
AjiI CACGTC 1 cut(s) 72
Alw26I GTCTC 3 cut(s) 347, 395, 478
AlwNI CAGNNNCTG 1 cut(s) 422
Ama87I CYCGRG 1 cut(s) 281
ApeKI GCWGC 3 cut(s) 95, 98, 101
ApoI RAATTY 2 cut(s) 32, 193
Asp700I GAANNNNTTC 1 cut(s) 26
AspLEI GCGC 1 cut(s) 54
AspS9I GGNCC 1 cut(s) 238
AsuHPI GGTGA 1 cut(s) 410
AvaI CYCGRG 1 cut(s) 281
AvaII GGWCC 1 cut(s) 238
AxyI CCTNAGG 1 cut(s) 384
BaeGI GKGCMC 2 cut(s) 138, 295
BbvI GCAGC 3 cut(s) 82, 85, 88
BceAI ACGGC 1 cut(s) 263
BclI TGATCA 1 cut(s) 502
BcoDI GTCTC 3 cut(s) 347, 395, 478
BfmI CTRYAG 2 cut(s) 102, 366
BfuAI ACCTGC 1 cut(s) 337
BisI GCNGC 4 cut(s) 96, 99, 102, 173
BlsI GCNGC 4 cut(s) 97, 100, 103, 174
Bme18I GGWCC 1 cut(s) 238
BmeT110I CYCGRG 1 cut(s) 281
BmgBI CACGTC 1 cut(s) 72
BmgT120I GGNCC 1 cut(s) 238
BpmI CTGGAG 1 cut(s) 46
BsaAI YACGTR 1 cut(s) 517
BsaI GGTCTC 1 cut(s) 395
Bsc4I CCNNNNNNNGG 3 cut(s) 235, 371, 428
Bse1I ACTGG 1 cut(s) 63
Bse21I CCTNAGG 1 cut(s) 384
BseLI CCNNNNNNNGG 3 cut(s) 235, 371, 428
BseMII CTCAG 1 cut(s) 342
BseNI ACTGG 1 cut(s) 63
BseSI GKGCMC 2 cut(s) 138, 295
BseXI GCAGC 3 cut(s) 82, 85, 88
Bsh1236I CGCG 1 cut(s) 336
BsiHKCI CYCGRG 1 cut(s) 281
BslI CCNNNNNNNGG 3 cut(s) 235, 371, 428
BsmAI GTCTC 3 cut(s) 347, 395, 478
BsmI GAATGC 1 cut(s) 160
Bso31I GGTCTC 1 cut(s) 395
BsoBI CYCGRG 1 cut(s) 281
Bsp1286I GDGCHC 2 cut(s) 138, 295
Bsp143I GATC 1 cut(s) 502
Bsp68I TCGCGA 1 cut(s) 336
BspACI CCGC 2 cut(s) 172, 201
BspCNI CTCAG 1 cut(s) 343
BspFNI CGCG 1 cut(s) 336
BspHI TCATGA 1 cut(s) 261
BspMAI CTGCAG 1 cut(s) 106
BspMI ACCTGC 1 cut(s) 337
BspQI GCTCTTC 1 cut(s) 162
BspTNI GGTCTC 1 cut(s) 395
BsrBI CCGCTC 1 cut(s) 172
BsrI ACTGG 1 cut(s) 63
BssMI GATC 1 cut(s) 502
Bst4CI ACNGT 1 cut(s) 242
Bst6I CTCTTC 3 cut(s) 105, 162, 333
BstBAI YACGTR 1 cut(s) 517
BstC8I GCNNGC 2 cut(s) 160, 334
BstDEI CTNAG 2 cut(s) 351, 384
BstENI CCTNNNNNAGG 1 cut(s) 233
BstFNI CGCG 1 cut(s) 336
BstHHI GCGC 1 cut(s) 54
BstKTI GATC 1 cut(s) 505
BstMAI GTCTC 3 cut(s) 347, 395, 478
BstMBI GATC 1 cut(s) 502
BstMWI GCNNNNNNNGC 1 cut(s) 101
BstSFI CTRYAG 2 cut(s) 102, 366
BstSLI GKGCMC 2 cut(s) 138, 295
BstUI CGCG 1 cut(s) 336
BstV1I GCAGC 3 cut(s) 82, 85, 88
BstXI CCANNNNNNTGG 1 cut(s) 517
Bsu36I CCTNAGG 1 cut(s) 384
BtrI CACGTC 1 cut(s) 72
BtsIMutI CAGTG 1 cut(s) 498
BtuMI TCGCGA 1 cut(s) 336
BveI ACCTGC 1 cut(s) 337
Cac8I GCNNGC 2 cut(s) 160, 334
CaiI CAGNNNCTG 1 cut(s) 422
CciI TCATGA 1 cut(s) 261
CfoI GCGC 1 cut(s) 54
Cfr13I GGNCC 1 cut(s) 238
CseI GACGC 1 cut(s) 101
CviAII CATG 3 cut(s) 209, 262, 428
DdeI CTNAG 2 cut(s) 351, 384
DpnI GATC 1 cut(s) 504
DpnII GATC 1 cut(s) 502
Eam1104I CTCTTC 3 cut(s) 105, 162, 333
EarI CTCTTC 3 cut(s) 105, 162, 333
Eco31I GGTCTC 1 cut(s) 395
Eco32I GATATC 1 cut(s) 181
Eco47I GGWCC 1 cut(s) 238
Eco81I CCTNAGG 1 cut(s) 384
Eco88I CYCGRG 1 cut(s) 281
EcoNI CCTNNNNNAGG 1 cut(s) 233
EcoRI GAATTC 1 cut(s) 193
EcoRV GATATC 1 cut(s) 181
FaeI CATG 3 cut(s) 212, 265, 431
FaiI YATR 9 cut(s) 78, 132, 164, 205, 210, 218, 263, 368, 429
FalI AAGNNNNNCTT 2 cut(s) 159, 191
FatI CATG 3 cut(s) 208, 261, 427
FbaI TGATCA 1 cut(s) 502
FblI GTMKAC 1 cut(s) 244
Fnu4HI GCNGC 4 cut(s) 96, 99, 102, 173
Fsp4HI GCNGC 4 cut(s) 96, 99, 102, 173
GlaI GCGC 1 cut(s) 53
GluI GCNGC 4 cut(s) 96, 99, 102, 173
GsuI CTGGAG 1 cut(s) 46
HgaI GACGC 1 cut(s) 101
HhaI GCGC 1 cut(s) 54
Hin1II CATG 3 cut(s) 212, 265, 431
Hin6I GCGC 1 cut(s) 52
HinP1I GCGC 1 cut(s) 52
HincII GTYRAC 1 cut(s) 245
HindII GTYRAC 1 cut(s) 245
HinfI GANTC 1 cut(s) 401
HphI GGTGA 1 cut(s) 410
Hpy166II GTNNAC 1 cut(s) 245
Hpy188I TCNGA 4 cut(s) 352, 460, 478, 490
Hpy188III TCNNGA 5 cut(s) 149, 262, 274, 323, 335
Hpy8I GTNNAC 1 cut(s) 245
Hpy99I CGWCG 4 cut(s) 76, 121, 246, 249
HpyAV CCTTC 2 cut(s) 119, 194
HpyCH4III ACNGT 1 cut(s) 242
HpyCH4IV ACGT 3 cut(s) 71, 319, 516
HpyCH4V TGCA 2 cut(s) 104, 427
HpyF10VI GCNNNNNNNGC 1 cut(s) 101
HpyF3I CTNAG 2 cut(s) 351, 384
HpySE526I ACGT 3 cut(s) 71, 319, 516
Hsp92II CATG 3 cut(s) 212, 265, 431
HspAI GCGC 1 cut(s) 52
Ksp22I TGATCA 1 cut(s) 502
Kzo9I GATC 1 cut(s) 502
LguI GCTCTTC 1 cut(s) 162
LpnPI CCDG 5 cut(s) 18, 76, 162, 342, 435
Lsp1109I GCAGC 3 cut(s) 82, 85, 88
MaeII ACGT 3 cut(s) 71, 319, 516
MaeIII GTNAC 2 cut(s) 65, 402
MalI GATC 1 cut(s) 504
MbiI CCGCTC 1 cut(s) 172
MboI GATC 1 cut(s) 502
MboII GAAGA 5 cut(s) 34, 122, 179, 350, 447
MfeI CAATTG 1 cut(s) 468
MhlI GDGCHC 2 cut(s) 138, 295
MluCI AATT 4 cut(s) 32, 193, 311, 468
MlyI GAGTC 1 cut(s) 410
MnlI CCTC 6 cut(s) 70, 106, 229, 239, 270, 334
MroXI GAANNNNTTC 1 cut(s) 26
MseI TTAA 1 cut(s) 15
MunI CAATTG 1 cut(s) 468
Mva1269I GAATGC 1 cut(s) 160
MvnI CGCG 1 cut(s) 336
MwoI GCNNNNNNNGC 1 cut(s) 101
NdeII GATC 1 cut(s) 502
NlaIII CATG 3 cut(s) 212, 265, 431
NmuCI GTSAC 1 cut(s) 402
NruI TCGCGA 1 cut(s) 336
PaeR7I CTCGAG 1 cut(s) 281
PagI TCATGA 1 cut(s) 261
PciSI GCTCTTC 1 cut(s) 162
PctI GAATGC 1 cut(s) 160
PdmI GAANNNNTTC 1 cut(s) 26
PkrI GCNGC 4 cut(s) 97, 100, 103, 174
PleI GAGTC 1 cut(s) 409
PpsI GAGTC 1 cut(s) 409
Ppu21I YACGTR 1 cut(s) 517
PspPI GGNCC 1 cut(s) 238
PspXI VCTCGAGB 1 cut(s) 281
PstI CTGCAG 1 cut(s) 106
PstNI CAGNNNCTG 1 cut(s) 422
RruI TCGCGA 1 cut(s) 336
SalI GTCGAC 1 cut(s) 243
SapI GCTCTTC 1 cut(s) 162
SaqAI TTAA 1 cut(s) 15
SatI GCNGC 4 cut(s) 96, 99, 102, 173
Sau3AI GATC 1 cut(s) 502
Sau96I GGNCC 1 cut(s) 238
SchI GAGTC 1 cut(s) 410
SduI GDGCHC 2 cut(s) 138, 295
SetI ASST 8 cut(s) 74, 322, 331, 345, 373, 385, 439, 519
SfcI CTRYAG 2 cut(s) 102, 366
Sfr274I CTCGAG 1 cut(s) 281
SgrDI CGTCGACG 1 cut(s) 243
SinI GGWCC 1 cut(s) 238
SlaI CTCGAG 1 cut(s) 281
SmlI CTYRAG 1 cut(s) 281
SmoI CTYRAG 1 cut(s) 281
Sse9I AATT 4 cut(s) 32, 193, 311, 468
SsiI CCGC 2 cut(s) 172, 201
TaaI ACNGT 1 cut(s) 242
TaiI ACGT 3 cut(s) 74, 322, 519
TaqI TCGA 3 cut(s) 244, 252, 282
TaqII GACCGA 1 cut(s) 259
TasI AATT 4 cut(s) 32, 193, 311, 468
TauI GCSGC 1 cut(s) 175
Tru1I TTAA 1 cut(s) 15
Tru9I TTAA 1 cut(s) 15
TscAI CASTG 1 cut(s) 505
TseFI GTSAC 1 cut(s) 402
TseI GCWGC 3 cut(s) 95, 98, 101
Tsp45I GTSAC 1 cut(s) 402
TspDTI ATGAA 2 cut(s) 123, 250
TspGWI ACGGA 1 cut(s) 248
TspRI CASTG 1 cut(s) 505
VpaK11BI GGWCC 1 cut(s) 238
XagI CCTNNNNNAGG 1 cut(s) 233
XapI RAATTY 2 cut(s) 32, 193
XhoI CTCGAG 1 cut(s) 281
XmiI GTMKAC 1 cut(s) 244
XmnI GAANNNNTTC 1 cut(s) 26
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.