RchiOBHm_Chr6g0274861

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_chinensis
6
OG0000314
Physical Location & Seq
Reverse (-)
36421752 .. 36422827
1076 bp
Loading structure...
UTR
Exon/CDS
Intron
PRQ24660

Sequence Viewer

Length: 417 bp
ATGTCGGTGACGCAGTTAGATGTCGGCGTGGGGCTCCAAGGTTGGTTTGATCTCAGATGGGGCTATATGATTGGTGTGCAGAAGGGTGGCACTTGGAGTCAAGCGGACGGAATCGGGATTGGTTATTTCCGGCAAGGGAAGGCGGAGCTCAGGCTGGGTGCCCAGAGAGTTTTTGGGTGCCCAATTGTGGACCTGGGCCATTTTTTGTTTGGACTGCTCAAGATGGGTTTTTGCTTGGGCTTTATTTTCTTTTTGGATTCGCATTTGGGATCCAGGGACTCTTCATGGACTCCTTCTTCGATTACATTTTGGATTTGGATTATCAGCTACTTAGGTAGAAGATTGCTCTCTATTCGACGTATTATTTTACGTGAAATAGGCAAGGTCGGTCACACTACCGCCAGTTATCTTTGTTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

138

Amino Acids

15.5

Weight (kDa)

9.66

Isoelectric Point (pI)

41.66

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0000314)

Species Orthologous Gene IDs
fragaria_vesca FvH4_1g02272 FvH4_1g22661 FvH4_2g10242 FvH4_2g34051 FvH4_3g19221 FvH4_3g29651 FvH4_3g30891 FvH4_4g11061 FvH4_5g09250 FvH4_5g15302 FvH4_5g15303 FvH4_5g15304 FvH4_5g28521 FvH4_6g23591 FvH4_7g05710 FvH4_7g19520
pyrus_communis pycom07g06330
rosa_chinensis RchiOBHm_Chr5g0027301 RchiOBHm_Chr6g0251451 RchiOBHm_Chr6g0274861
rosa_laevigata RLG00000007850
rosa_multiflora Rmu_co8230721.1_g000001 Rmu_sc0000271.1_g000027 Rmu_sc0000303.1_g000024 Rmu_sc0000368.1_g000024 Rmu_sc0000621.1_g000037 Rmu_sc0000693.1_g000081 Rmu_sc0001229.1_g000006 Rmu_sc0001373.1_g000003 Rmu_sc0001459.1_g000001 Rmu_sc0001744.1_g000002 Rmu_sc0001909.1_g000002 Rmu_sc0002053.1_g000012 Rmu_sc0002060.1_g000015 Rmu_sc0002119.1_g000036 Rmu_sc0002177.1_g000007 Rmu_sc0002822.1_g000024 Rmu_sc0002965.1_g000015 Rmu_sc0003363.1_g000051 Rmu_sc0003500.1_g000013 Rmu_sc0004191.1_g000020 Rmu_sc0004904.1_g000032 Rmu_sc0005325.1_g000008 Rmu_sc0005947.1_g000040 Rmu_sc0006475.1_g000001 Rmu_sc0006522.1_g000019 Rmu_sc0007102.1_g000005 Rmu_sc0007810.1_g000003 Rmu_sc0008339.1_g000025 Rmu_sc0008698.1_g000004 Rmu_sc0009313.1_g000006 Rmu_sc0009850.1_g000006 Rmu_sc0010598.1_g000003 Rmu_sc0011162.1_g000002 Rmu_sc0011824.1_g000004 Rmu_sc0011900.1_g000010 Rmu_sc0012291.1_g000006 Rmu_sc0012619.1_g000003 Rmu_sc0014679.1_g000001 Rmu_sc0019053.1_g000001 Rmu_sc0021462.1_g000003 Rmu_sc0024172.1_g000001 Rmu_sc0024173.1_g000001 Rmu_ssc0000052.1_g000016 Rmu_ssc0000392.1_g000010 Rmu_ssc0000421.1_g000062 Rmu_ssc0000479.1_g000006
rosa_roxburghii Rroxscaffold_153G00436600 Rroxscaffold_1G00008580 Rroxscaffold_1G00016770 Rroxscaffold_1G00029550 Rroxscaffold_1G00036450 Rroxscaffold_1G00040410 Rroxscaffold_1G00047110 Rroxscaffold_1G00060570 Rroxscaffold_2G00081500 Rroxscaffold_2G00081510 Rroxscaffold_2G00086080 Rroxscaffold_2G00099620 Rroxscaffold_2G00099630 Rroxscaffold_2G00099640 Rroxscaffold_2G00109170 Rroxscaffold_2G00127750 Rroxscaffold_2G00128590 Rroxscaffold_2G00130780 Rroxscaffold_2G00131040 Rroxscaffold_2G00143160 Rroxscaffold_3G00229280 Rroxscaffold_3G00229290 Rroxscaffold_3G00229970 Rroxscaffold_3G00242860 Rroxscaffold_3G00242890 Rroxscaffold_3G00242900 Rroxscaffold_3G00248200 Rroxscaffold_4G00284550 Rroxscaffold_4G00288780 Rroxscaffold_4G00298620 Rroxscaffold_4G00298630 Rroxscaffold_4G00312420 Rroxscaffold_4G00320310 Rroxscaffold_4G00322220 Rroxscaffold_4G00323600 Rroxscaffold_4G00331830 Rroxscaffold_4G00332010 Rroxscaffold_4G00332020 Rroxscaffold_5G00344470 Rroxscaffold_5G00345310 Rroxscaffold_5G00356120 Rroxscaffold_5G00368700 Rroxscaffold_5G00379820 Rroxscaffold_5G00382480 Rroxscaffold_6G00395080 Rroxscaffold_6G00405520 Rroxscaffold_6G00428210 Rroxscaffold_7G00193460
rosa_samantha Rh7CG413200 Rh7DG284900

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB1I GGYRCC 2 cut(s) 158, 177
AciI CCGC 3 cut(s) 104, 143, 399
AclWI GGATC 2 cut(s) 264, 277
AfiI CCNNNNNNNGG 1 cut(s) 187
AjnI CCWGG 2 cut(s) 192, 272
AluBI AGCT 2 cut(s) 148, 327
AluI AGCT 2 cut(s) 148, 327
Alw21I GWGCWC 1 cut(s) 150
AlwI GGATC 2 cut(s) 264, 277
AoxI GGCC 1 cut(s) 196
ArsI GACNNNNNNTTYG 2 cut(s) 280, 312
AspS9I GGNCC 2 cut(s) 190, 196
AsuHPI GGTGA 1 cut(s) 19
AvaII GGWCC 1 cut(s) 190
BaeGI GKGCMC 2 cut(s) 163, 182
BamHI GGATCC 1 cut(s) 269
BanI GGYRCC 2 cut(s) 158, 177
BanII GRGCYC 2 cut(s) 36, 150
Bbv12I GWGCWC 1 cut(s) 150
BccI CCATC 2 cut(s) 51, 217
BciT130I CCWGG 2 cut(s) 194, 274
Bme1390I CCNGG 2 cut(s) 194, 274
Bme18I GGWCC 1 cut(s) 190
BmgT120I GGNCC 2 cut(s) 190, 196
BmiI GGNNCC 4 cut(s) 35, 160, 179, 271
BmrFI CCNGG 2 cut(s) 194, 274
Bpu10I CCTNAGC 1 cut(s) 149
BpuEI CTTGAG 1 cut(s) 203
BsaAI YACGTR 1 cut(s) 371
BsaJI CCNNGG 3 cut(s) 37, 193, 273
Bsc4I CCNNNNNNNGG 1 cut(s) 187
Bse1I ACTGG 1 cut(s) 402
BseBI CCWGG 2 cut(s) 194, 274
BseDI CCNNGG 3 cut(s) 37, 193, 273
BseLI CCNNNNNNNGG 1 cut(s) 187
BseMII CTCAG 2 cut(s) 67, 163
BseNI ACTGG 1 cut(s) 402
BseSI GKGCMC 2 cut(s) 163, 182
BseYI CCCAGC 1 cut(s) 154
BsgI GTGCAG 1 cut(s) 98
BshFI GGCC 1 cut(s) 198
BshNI GGYRCC 2 cut(s) 158, 177
BsiHKAI GWGCWC 1 cut(s) 150
BsiSI CCGG 1 cut(s) 130
BslFI GGGAC 1 cut(s) 290
BslI CCNNNNNNNGG 1 cut(s) 187
BsmFI GGGAC 1 cut(s) 290
BsnI GGCC 1 cut(s) 198
Bsp1286I GDGCHC 4 cut(s) 36, 150, 163, 182
Bsp143I GATC 2 cut(s) 49, 269
BspACI CCGC 3 cut(s) 104, 143, 399
BspANI GGCC 1 cut(s) 198
BspCNI CTCAG 2 cut(s) 66, 162
BspLI GGNNCC 4 cut(s) 35, 160, 179, 271
BspPI GGATC 2 cut(s) 264, 277
BspT107I GGYRCC 2 cut(s) 158, 177
BsrI ACTGG 1 cut(s) 402
BssECI CCNNGG 3 cut(s) 37, 193, 273
BssMI GATC 2 cut(s) 49, 269
BssT1I CCWWGG 1 cut(s) 37
Bst2UI CCWGG 2 cut(s) 194, 274
Bst6I CTCTTC 1 cut(s) 286
BstBAI YACGTR 1 cut(s) 371
BstDEI CTNAG 3 cut(s) 53, 149, 331
BstKTI GATC 2 cut(s) 52, 272
BstMBI GATC 2 cut(s) 49, 269
BstNI CCWGG 2 cut(s) 194, 274
BstSCI CCNGG 2 cut(s) 192, 272
BstSLI GKGCMC 2 cut(s) 163, 182
BstX2I RGATCY 1 cut(s) 269
BstYI RGATCY 1 cut(s) 269
BsuRI GGCC 1 cut(s) 198
Cfr13I GGNCC 2 cut(s) 190, 196
CseI GACGC 1 cut(s) 19
CviAII CATG 1 cut(s) 285
CviJI RGCY 7 cut(s) 34, 63, 148, 154, 198, 240, 327
CviKI_1 RGCY 7 cut(s) 34, 63, 148, 154, 198, 240, 327
DdeI CTNAG 3 cut(s) 53, 149, 331
DpnI GATC 2 cut(s) 51, 271
DpnII GATC 2 cut(s) 49, 269
Eam1104I CTCTTC 1 cut(s) 286
EarI CTCTTC 1 cut(s) 286
EciI GGCGGA 1 cut(s) 158
Ecl136II GAGCTC 1 cut(s) 148
Eco130I CCWWGG 1 cut(s) 37
Eco24I GRGCYC 2 cut(s) 36, 150
Eco47I GGWCC 1 cut(s) 190
Eco53kI GAGCTC 1 cut(s) 148
EcoICRI GAGCTC 1 cut(s) 148
EcoRII CCWGG 2 cut(s) 192, 272
EcoT14I CCWWGG 1 cut(s) 37
EcoT38I GRGCYC 2 cut(s) 36, 150
ErhI CCWWGG 1 cut(s) 37
FaeI CATG 1 cut(s) 288
FaiI YATR 3 cut(s) 66, 68, 286
FaqI GGGAC 1 cut(s) 290
FatI CATG 1 cut(s) 284
FriOI GRGCYC 2 cut(s) 36, 150
GsaI CCCAGC 1 cut(s) 158
HaeIII GGCC 1 cut(s) 198
HapII CCGG 1 cut(s) 130
HgaI GACGC 1 cut(s) 19
Hin1II CATG 1 cut(s) 288
HinfI GANTC 5 cut(s) 97, 111, 257, 278, 289
HpaII CCGG 1 cut(s) 130
HphI GGTGA 1 cut(s) 19
Hpy166II GTNNAC 1 cut(s) 190
Hpy188I TCNGA 1 cut(s) 56
Hpy188III TCNNGA 2 cut(s) 115, 220
Hpy8I GTNNAC 1 cut(s) 190
Hpy99I CGWCG 1 cut(s) 360
HpyAV CCTTC 3 cut(s) 76, 133, 303
HpyCH4IV ACGT 2 cut(s) 358, 370
HpyCH4V TGCA 1 cut(s) 79
HpyF3I CTNAG 3 cut(s) 53, 149, 331
HpySE526I ACGT 2 cut(s) 358, 370
Hsp92II CATG 1 cut(s) 288
Kzo9I GATC 2 cut(s) 49, 269
LmnI GCTCC 2 cut(s) 39, 145
LpnPI CCDG 8 cut(s) 136, 140, 143, 176, 179, 206, 259, 286
MaeII ACGT 2 cut(s) 358, 370
MaeIII GTNAC 2 cut(s) 7, 389
MalI GATC 2 cut(s) 51, 271
MboI GATC 2 cut(s) 49, 269
MboII GAAGA 3 cut(s) 273, 288, 351
MfeI CAATTG 1 cut(s) 183
MflI RGATCY 1 cut(s) 269
MhlI GDGCHC 4 cut(s) 36, 150, 163, 182
MluCI AATT 1 cut(s) 183
MlyI GAGTC 3 cut(s) 106, 272, 283
MspI CCGG 1 cut(s) 130
MspR9I CCNGG 2 cut(s) 194, 274
MunI CAATTG 1 cut(s) 183
MvaI CCWGG 2 cut(s) 194, 274
NdeII GATC 2 cut(s) 49, 269
NlaIII CATG 1 cut(s) 288
NlaIV GGNNCC 4 cut(s) 35, 160, 179, 271
NmuCI GTSAC 2 cut(s) 7, 389
PfeI GAWTC 2 cut(s) 111, 257
PleI GAGTC 3 cut(s) 105, 272, 283
PpsI GAGTC 3 cut(s) 105, 272, 283
Ppu21I YACGTR 1 cut(s) 371
Psp124BI GAGCTC 1 cut(s) 150
Psp6I CCWGG 2 cut(s) 192, 272
PspFI CCCAGC 1 cut(s) 154
PspGI CCWGG 2 cut(s) 192, 272
PspN4I GGNNCC 4 cut(s) 35, 160, 179, 271
PspPI GGNCC 2 cut(s) 190, 196
PsuI RGATCY 1 cut(s) 269
SacI GAGCTC 1 cut(s) 150
Sau3AI GATC 2 cut(s) 49, 269
Sau96I GGNCC 2 cut(s) 190, 196
SchI GAGTC 3 cut(s) 106, 272, 283
ScrFI CCNGG 2 cut(s) 194, 274
SduI GDGCHC 4 cut(s) 36, 150, 163, 182
SetI ASST 8 cut(s) 43, 150, 195, 329, 337, 361, 373, 387
SinI GGWCC 1 cut(s) 190
SmlI CTYRAG 1 cut(s) 218
SmoI CTYRAG 1 cut(s) 218
Sse9I AATT 1 cut(s) 183
SsiI CCGC 3 cut(s) 104, 143, 399
SstI GAGCTC 1 cut(s) 150
StyD4I CCNGG 2 cut(s) 192, 272
StyI CCWWGG 1 cut(s) 37
TaiI ACGT 2 cut(s) 361, 373
TaqI TCGA 2 cut(s) 299, 355
TaqII GACCGA 1 cut(s) 377
TasI AATT 1 cut(s) 183
TfiI GAWTC 2 cut(s) 111, 257
TseFI GTSAC 2 cut(s) 7, 389
Tsp45I GTSAC 2 cut(s) 7, 389
TspDTI ATGAA 1 cut(s) 273
TspGWI ACGGA 1 cut(s) 123
VpaK11BI GGWCC 1 cut(s) 190
XcmI CCANNNNNNNNNTGG 2 cut(s) 170, 206
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.