Rroxscaffold_3G00229280

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_roxburghii
GWHEROQ00000003
OG0000314
Physical Location & Seq
Forward (+)
13783090 .. 13784985
1896 bp
Loading structure...
UTR
Exon/CDS
Intron
Rroxscaffold_3G00229280.1

Sequence Viewer

Length: 597 bp
ATGGCTGCCCATGCAACTAATGGCATGCACCAAGAAGGCGTACGCGGATCTTGCCGCAGAAACCGCAAAATCGAAAGGCTCCGCCGCGAGTTTGAGCAGCGTATGACTCTATACGCGAAGAGTACCGAGCGGCGGTTACACGGACGAGAGAGCGCCTTGAAGGCGCAAGCTATAACCATCGCCGCCGAACGGGATGAGCGTCATAAGACAATTTTGAACGCTATAGCGGAACGGAACAAGCATACCTCATTGGAGTGCGCGACCTTGCGCAAGGAAGGTCCCAACTTGACTACTCAAGTCGGTTCACGGCAAGGCGAATTGGAAAGCCAAAAATCTTCGCGCCAAGAGGTTGTTTCTAAGGTTGAATTTCCTACGAGTGGCAATAAACCTAAATGCCTCATTGATGAGTCACGGCCTTACATAGAGGCGTGCATGGAGAAGACGGTCGCAAGAATGTTCTTCGACGAAATTGGCTCGAACAAATACTTGACTTCTCCAATGATCAAGCCAAATATGTGGCTGCGATCGGATGCAGGGGGCAAGACGCAACCCATGATCATTCTTTTGATCACCGAAGCGGGTTCTTCGAGATTCTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

198

Amino Acids

22.48

Weight (kDa)

9.79

Isoelectric Point (pI)

65.61

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0000314)

Species Orthologous Gene IDs
fragaria_vesca FvH4_1g02272 FvH4_1g22661 FvH4_2g10242 FvH4_2g34051 FvH4_3g19221 FvH4_3g29651 FvH4_3g30891 FvH4_4g11061 FvH4_5g09250 FvH4_5g15302 FvH4_5g15303 FvH4_5g15304 FvH4_5g28521 FvH4_6g23591 FvH4_7g05710 FvH4_7g19520
pyrus_communis pycom07g06330
rosa_chinensis RchiOBHm_Chr5g0027301 RchiOBHm_Chr6g0251451 RchiOBHm_Chr6g0274861
rosa_laevigata RLG00000007850
rosa_multiflora Rmu_co8230721.1_g000001 Rmu_sc0000271.1_g000027 Rmu_sc0000303.1_g000024 Rmu_sc0000368.1_g000024 Rmu_sc0000621.1_g000037 Rmu_sc0000693.1_g000081 Rmu_sc0001229.1_g000006 Rmu_sc0001373.1_g000003 Rmu_sc0001459.1_g000001 Rmu_sc0001744.1_g000002 Rmu_sc0001909.1_g000002 Rmu_sc0002053.1_g000012 Rmu_sc0002060.1_g000015 Rmu_sc0002119.1_g000036 Rmu_sc0002177.1_g000007 Rmu_sc0002822.1_g000024 Rmu_sc0002965.1_g000015 Rmu_sc0003363.1_g000051 Rmu_sc0003500.1_g000013 Rmu_sc0004191.1_g000020 Rmu_sc0004904.1_g000032 Rmu_sc0005325.1_g000008 Rmu_sc0005947.1_g000040 Rmu_sc0006475.1_g000001 Rmu_sc0006522.1_g000019 Rmu_sc0007102.1_g000005 Rmu_sc0007810.1_g000003 Rmu_sc0008339.1_g000025 Rmu_sc0008698.1_g000004 Rmu_sc0009313.1_g000006 Rmu_sc0009850.1_g000006 Rmu_sc0010598.1_g000003 Rmu_sc0011162.1_g000002 Rmu_sc0011824.1_g000004 Rmu_sc0011900.1_g000010 Rmu_sc0012291.1_g000006 Rmu_sc0012619.1_g000003 Rmu_sc0014679.1_g000001 Rmu_sc0019053.1_g000001 Rmu_sc0021462.1_g000003 Rmu_sc0024172.1_g000001 Rmu_sc0024173.1_g000001 Rmu_ssc0000052.1_g000016 Rmu_ssc0000392.1_g000010 Rmu_ssc0000421.1_g000062 Rmu_ssc0000479.1_g000006
rosa_roxburghii Rroxscaffold_153G00436600 Rroxscaffold_1G00008580 Rroxscaffold_1G00016770 Rroxscaffold_1G00029550 Rroxscaffold_1G00036450 Rroxscaffold_1G00040410 Rroxscaffold_1G00047110 Rroxscaffold_1G00060570 Rroxscaffold_2G00081500 Rroxscaffold_2G00081510 Rroxscaffold_2G00086080 Rroxscaffold_2G00099620 Rroxscaffold_2G00099630 Rroxscaffold_2G00099640 Rroxscaffold_2G00109170 Rroxscaffold_2G00127750 Rroxscaffold_2G00128590 Rroxscaffold_2G00130780 Rroxscaffold_2G00131040 Rroxscaffold_2G00143160 Rroxscaffold_3G00229280 Rroxscaffold_3G00229290 Rroxscaffold_3G00229970 Rroxscaffold_3G00242860 Rroxscaffold_3G00242890 Rroxscaffold_3G00242900 Rroxscaffold_3G00248200 Rroxscaffold_4G00284550 Rroxscaffold_4G00288780 Rroxscaffold_4G00298620 Rroxscaffold_4G00298630 Rroxscaffold_4G00312420 Rroxscaffold_4G00320310 Rroxscaffold_4G00322220 Rroxscaffold_4G00323600 Rroxscaffold_4G00331830 Rroxscaffold_4G00332010 Rroxscaffold_4G00332020 Rroxscaffold_5G00344470 Rroxscaffold_5G00345310 Rroxscaffold_5G00356120 Rroxscaffold_5G00368700 Rroxscaffold_5G00379820 Rroxscaffold_5G00382480 Rroxscaffold_6G00395080 Rroxscaffold_6G00405520 Rroxscaffold_6G00428210 Rroxscaffold_7G00193460
rosa_samantha Rh7CG413200 Rh7DG284900

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc16I TGCGCA 1 cut(s) 269
AccBSI CCGCTC 1 cut(s) 130
AccII CGCG 5 cut(s) 45, 87, 116, 260, 340
AclWI GGATC 1 cut(s) 55
AcsI RAATTY 1 cut(s) 365
AfaI GTAC 2 cut(s) 42, 124
AfiI CCNNNNNNNGG 3 cut(s) 132, 189, 377
AgsI TTSAA 3 cut(s) 160, 217, 365
AluBI AGCT 1 cut(s) 170
AluI AGCT 1 cut(s) 170
AlwI GGATC 1 cut(s) 55
AoxI GGCC 1 cut(s) 413
ApeKI GCWGC 3 cut(s) 5, 97, 520
ApoI RAATTY 1 cut(s) 365
AspLEI GCGC 5 cut(s) 155, 166, 260, 270, 342
AspS9I GGNCC 1 cut(s) 278
AsuHPI GGTGA 1 cut(s) 562
AvaII GGWCC 1 cut(s) 278
BbsI GAAGAC 1 cut(s) 446
BbvI GCAGC 2 cut(s) 109, 507
BccI CCATC 1 cut(s) 185
BceAI ACGGC 2 cut(s) 323, 428
BclI TGATCA 3 cut(s) 501, 555, 567
BfmI CTRYAG 1 cut(s) 222
BfoI RGCGCY 1 cut(s) 156
BglI GCCNNNNNGGC 1 cut(s) 161
BisI GCNGC 7 cut(s) 6, 55, 85, 98, 131, 183, 521
BlsI GCNGC 7 cut(s) 7, 56, 86, 99, 132, 184, 522
Bme18I GGWCC 1 cut(s) 278
BmgT120I GGNCC 1 cut(s) 278
BmiI GGNNCC 2 cut(s) 80, 280
BmsI GCATC 1 cut(s) 520
BpiI GAAGAC 1 cut(s) 446
BpuEI CTTGAG 1 cut(s) 279
Bsc4I CCNNNNNNNGG 3 cut(s) 132, 189, 377
BseGI GGATG 2 cut(s) 199, 535
BseLI CCNNNNNNNGG 3 cut(s) 132, 189, 377
BseXI GCAGC 2 cut(s) 109, 507
Bsh1236I CGCG 5 cut(s) 45, 87, 116, 260, 340
Bsh1285I CGRYCG 2 cut(s) 447, 527
BshFI GGCC 1 cut(s) 415
BsiEI CGRYCG 2 cut(s) 447, 527
BsiWI CGTACG 1 cut(s) 40
BslFI GGGAC 1 cut(s) 264
BslI CCNNNNNNNGG 3 cut(s) 132, 189, 377
BsmFI GGGAC 1 cut(s) 264
BsnI GGCC 1 cut(s) 415
Bsp143I GATC 5 cut(s) 47, 501, 524, 555, 567
BspANI GGCC 1 cut(s) 415
BspFNI CGCG 5 cut(s) 45, 87, 116, 260, 340
BspLI GGNNCC 2 cut(s) 80, 280
BspPI GGATC 1 cut(s) 55
BsrBI CCGCTC 1 cut(s) 130
BssMI GATC 5 cut(s) 47, 501, 524, 555, 567
Bst4CI ACNGT 1 cut(s) 445
Bst6I CTCTTC 1 cut(s) 113
BstC8I GCNNGC 3 cut(s) 26, 168, 430
BstDEI CTNAG 1 cut(s) 357
BstF5I GGATG 2 cut(s) 199, 535
BstFNI CGCG 5 cut(s) 45, 87, 116, 260, 340
BstH2I RGCGCY 1 cut(s) 156
BstHHI GCGC 5 cut(s) 155, 166, 260, 270, 342
BstKTI GATC 5 cut(s) 50, 504, 527, 558, 570
BstMBI GATC 5 cut(s) 47, 501, 524, 555, 567
BstMCI CGRYCG 2 cut(s) 447, 527
BstMWI GCNNNNNNNGC 4 cut(s) 11, 51, 63, 161
BstNSI RCATGY 1 cut(s) 28
BstSFI CTRYAG 1 cut(s) 222
BstUI CGCG 5 cut(s) 45, 87, 116, 260, 340
BstV1I GCAGC 2 cut(s) 109, 507
BstV2I GAAGAC 1 cut(s) 446
BstX2I RGATCY 1 cut(s) 47
BstXI CCANNNNNNTGG 1 cut(s) 516
BstYI RGATCY 1 cut(s) 47
BsuRI GGCC 1 cut(s) 415
BtgZI GCGATG 1 cut(s) 163
BtsCI GGATG 2 cut(s) 199, 535
Cac8I GCNNGC 3 cut(s) 26, 168, 430
CfoI GCGC 5 cut(s) 155, 166, 260, 270, 342
Cfr13I GGNCC 1 cut(s) 278
CseI GACGC 2 cut(s) 188, 553
Csp6I GTAC 2 cut(s) 41, 123
CviAII CATG 4 cut(s) 11, 25, 433, 553
CviJI RGCY 8 cut(s) 5, 79, 170, 327, 415, 474, 508, 520
CviKI_1 RGCY 8 cut(s) 5, 79, 170, 327, 415, 474, 508, 520
CviQI GTAC 2 cut(s) 41, 123
DdeI CTNAG 1 cut(s) 357
DpnI GATC 5 cut(s) 49, 503, 526, 557, 569
DpnII GATC 5 cut(s) 47, 501, 524, 555, 567
Eam1104I CTCTTC 1 cut(s) 113
EarI CTCTTC 1 cut(s) 113
EciI GGCGGA 1 cut(s) 71
Eco47I GGWCC 1 cut(s) 278
EcoO109I RGGNCCY 1 cut(s) 278
FaeI CATG 4 cut(s) 14, 28, 436, 556
FaqI GGGAC 1 cut(s) 264
FatI CATG 4 cut(s) 10, 24, 432, 552
FauI CCCGC 1 cut(s) 571
FbaI TGATCA 3 cut(s) 501, 555, 567
Fnu4HI GCNGC 7 cut(s) 6, 55, 85, 98, 131, 183, 521
FokI GGATG 2 cut(s) 206, 542
Fsp4HI GCNGC 7 cut(s) 6, 55, 85, 98, 131, 183, 521
FspI TGCGCA 1 cut(s) 269
GlaI GCGC 5 cut(s) 154, 165, 259, 269, 341
GluI GCNGC 7 cut(s) 6, 55, 85, 98, 131, 183, 521
HaeII RGCGCY 1 cut(s) 156
HaeIII GGCC 1 cut(s) 415
HgaI GACGC 2 cut(s) 188, 553
HhaI GCGC 5 cut(s) 155, 166, 260, 270, 342
Hin1II CATG 4 cut(s) 14, 28, 436, 556
Hin6I GCGC 5 cut(s) 153, 164, 258, 268, 340
HinP1I GCGC 5 cut(s) 153, 164, 258, 268, 340
HinfI GANTC 3 cut(s) 106, 407, 591
HphI GGTGA 1 cut(s) 562
Hpy166II GTNNAC 1 cut(s) 305
Hpy188I TCNGA 1 cut(s) 529
Hpy188III TCNNGA 1 cut(s) 588
Hpy8I GTNNAC 1 cut(s) 305
Hpy99I CGWCG 1 cut(s) 467
HpyAV CCTTC 3 cut(s) 29, 154, 269
HpyCH4III ACNGT 1 cut(s) 445
HpyCH4V TGCA 4 cut(s) 14, 28, 432, 533
HpyF10VI GCNNNNNNNGC 4 cut(s) 11, 51, 63, 161
HpyF3I CTNAG 1 cut(s) 357
Hsp92II CATG 4 cut(s) 14, 28, 436, 556
HspAI GCGC 5 cut(s) 153, 164, 258, 268, 340
Ksp22I TGATCA 3 cut(s) 501, 555, 567
Kzo9I GATC 5 cut(s) 47, 501, 524, 555, 567
LmnI GCTCC 1 cut(s) 84
LpnPI CCDG 1 cut(s) 519
Lsp1109I GCAGC 2 cut(s) 109, 507
LweI GCATC 1 cut(s) 520
MaeIII GTNAC 2 cut(s) 135, 408
MalI GATC 5 cut(s) 49, 503, 526, 557, 569
MbiI CCGCTC 1 cut(s) 130
MboI GATC 5 cut(s) 47, 501, 524, 555, 567
MboII GAAGA 5 cut(s) 130, 327, 451, 451, 576
MflI RGATCY 1 cut(s) 47
MluCI AATT 4 cut(s) 210, 317, 365, 468
MlyI GAGTC 2 cut(s) 100, 416
MnlI CCTC 4 cut(s) 256, 340, 407, 418
MslI CAYNNNNRTG 1 cut(s) 253
MvnI CGCG 5 cut(s) 45, 87, 116, 260, 340
MwoI GCNNNNNNNGC 4 cut(s) 11, 51, 63, 161
NdeII GATC 5 cut(s) 47, 501, 524, 555, 567
NlaIII CATG 4 cut(s) 14, 28, 436, 556
NlaIV GGNNCC 2 cut(s) 80, 280
NmuCI GTSAC 1 cut(s) 408
NsbI TGCGCA 1 cut(s) 269
NspI RCATGY 1 cut(s) 28
PaeI GCATGC 1 cut(s) 28
PcsI WCGNNNNNNNCGW 1 cut(s) 196
PfeI GAWTC 1 cut(s) 591
Pfl23II CGTACG 1 cut(s) 40
PkrI GCNGC 7 cut(s) 7, 56, 86, 99, 132, 184, 522
Ple19I CGATCG 1 cut(s) 527
PleI GAGTC 2 cut(s) 100, 415
PpsI GAGTC 2 cut(s) 100, 415
PpuMI RGGWCCY 1 cut(s) 278
Psp5II RGGWCCY 1 cut(s) 278
PspLI CGTACG 1 cut(s) 40
PspN4I GGNNCC 2 cut(s) 80, 280
PspPI GGNCC 1 cut(s) 278
PspPPI RGGWCCY 1 cut(s) 278
PsuI RGATCY 1 cut(s) 47
PvuI CGATCG 1 cut(s) 527
RsaI GTAC 2 cut(s) 42, 124
RsaNI GTAC 2 cut(s) 41, 123
RseI CAYNNNNRTG 1 cut(s) 253
SatI GCNGC 7 cut(s) 6, 55, 85, 98, 131, 183, 521
Sau3AI GATC 5 cut(s) 47, 501, 524, 555, 567
Sau96I GGNCC 1 cut(s) 278
SchI GAGTC 2 cut(s) 100, 416
SetI ASST 7 cut(s) 172, 248, 266, 280, 351, 363, 391
SfaNI GCATC 1 cut(s) 520
SfcI CTRYAG 1 cut(s) 222
SinI GGWCC 1 cut(s) 278
SmiMI CAYNNNNRTG 1 cut(s) 253
SmlI CTYRAG 1 cut(s) 294
SmoI CTYRAG 1 cut(s) 294
SphI GCATGC 1 cut(s) 28
Sse9I AATT 4 cut(s) 210, 317, 365, 468
TaaI ACNGT 1 cut(s) 445
TaqI TCGA 4 cut(s) 72, 462, 476, 587
TasI AATT 4 cut(s) 210, 317, 365, 468
TauI GCSGC 4 cut(s) 57, 87, 133, 185
TfiI GAWTC 1 cut(s) 591
TseFI GTSAC 1 cut(s) 408
TseI GCWGC 3 cut(s) 5, 97, 520
Tsp45I GTSAC 1 cut(s) 408
TspGWI ACGGA 2 cut(s) 156, 247
VpaK11BI GGWCC 1 cut(s) 278
XapI RAATTY 1 cut(s) 365
XceI RCATGY 1 cut(s) 28
XcmI CCANNNNNNNNNTGG 1 cut(s) 17
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.