Basic Information

Type: gene

Biological Identity

Species

fragaria_vesca

Chromosome

Fvb5

Orthogroup ID

OG0000314

Physical Location & Seq

Genomic Coordinates Forward (+)

19691286 .. 19692063

Gene Structure 778 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

FvH4_5g28521.t1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 558 bp

ATGGTAGTTGGTGACAAGGCGGATCTCTACTCTATACCATCTGCAAAAGTTCAATTAAAGATTATGCTTTGTCGAATGGCGGAGACGCATGGGGGGCTAAGCGACATGCCCTACGAGCAGCGTTTCCAAAATTTTCAAGTGAGTGACACAAAGCATCTCTGCTCAACACTCGGAAGTTCTCGCAAGAGAGAGTCTCATGCTGCGAATGTCAACATGTTAAGGCTTGGAGTGAAGCATTGGTGGCCTCCCCCTTGGCCTTTCGAAGGCCATAGTACCAATGAGGTTCAAGCCACAGAAGAAAAGAAGACAGTTTGCAATTCTGCAAATTACAACTGCAGCTATTGTACACCAACTTCACGGATTAAACTGGGAAGATCTAGGAGGAACCAGAAGACAAGCCTTATATTCACGGAAAGCCCTGTGAGTCTACTTTCCAAAAAAATTTACGGTTTGCAATTCCGACGTTCCAAGAGAGAGTTATGGCAGTTTGAGTACCGGAAGGTCAGAATGCACGAAAATCAGCATCATGTGTTTGTTCATGACCTTTGGAGCTTCTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003676 GO:0003723 GO:0003824 GO:0004652 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005829 GO:0006139 GO:0006276 GO:0006378 GO:0006396 GO:0006397 GO:0006725 GO:0006807 GO:0008150 GO:0008152 GO:0009451 GO:0009987 GO:0010467 GO:0016070 GO:0016071 GO:0016740 GO:0016772 GO:0016779 GO:0031123 GO:0031124 GO:0034641 GO:0043170 GO:0043412 GO:0043631 GO:0044237 GO:0044238 GO:0044424 GO:0044444 GO:0044464 GO:0046483 GO:0070566 GO:0071704 GO:0090304 GO:0097159 GO:1901360 GO:1901363

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

PolyA_pol PolyA_pol_RNAbd

Protein Analysis

186

Amino Acids

21.65

Weight (kDa)

9.71

Isoelectric Point (pI)

45.54

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0000314)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_1g02272 FvH4_1g22661 FvH4_2g10242 FvH4_2g34051 FvH4_3g19221 FvH4_3g29651 FvH4_3g30891 FvH4_4g11061 FvH4_5g09250 FvH4_5g15302 FvH4_5g15303 FvH4_5g15304 FvH4_5g28521 FvH4_6g23591 FvH4_7g05710 FvH4_7g19520
pyrus_communis	pycom07g06330
rosa_chinensis	RchiOBHm_Chr5g0027301 RchiOBHm_Chr6g0251451 RchiOBHm_Chr6g0274861
rosa_laevigata	RLG00000007850
rosa_multiflora	Rmu_co8230721.1_g000001 Rmu_sc0000271.1_g000027 Rmu_sc0000303.1_g000024 Rmu_sc0000368.1_g000024 Rmu_sc0000621.1_g000037 Rmu_sc0000693.1_g000081 Rmu_sc0001229.1_g000006 Rmu_sc0001373.1_g000003 Rmu_sc0001459.1_g000001 Rmu_sc0001744.1_g000002 Rmu_sc0001909.1_g000002 Rmu_sc0002053.1_g000012 Rmu_sc0002060.1_g000015 Rmu_sc0002119.1_g000036 Rmu_sc0002177.1_g000007 Rmu_sc0002822.1_g000024 Rmu_sc0002965.1_g000015 Rmu_sc0003363.1_g000051 Rmu_sc0003500.1_g000013 Rmu_sc0004191.1_g000020 Rmu_sc0004904.1_g000032 Rmu_sc0005325.1_g000008 Rmu_sc0005947.1_g000040 Rmu_sc0006475.1_g000001 Rmu_sc0006522.1_g000019 Rmu_sc0007102.1_g000005 Rmu_sc0007810.1_g000003 Rmu_sc0008339.1_g000025 Rmu_sc0008698.1_g000004 Rmu_sc0009313.1_g000006 Rmu_sc0009850.1_g000006 Rmu_sc0010598.1_g000003 Rmu_sc0011162.1_g000002 Rmu_sc0011824.1_g000004 Rmu_sc0011900.1_g000010 Rmu_sc0012291.1_g000006 Rmu_sc0012619.1_g000003 Rmu_sc0014679.1_g000001 Rmu_sc0019053.1_g000001 Rmu_sc0021462.1_g000003 Rmu_sc0024172.1_g000001 Rmu_sc0024173.1_g000001 Rmu_ssc0000052.1_g000016 Rmu_ssc0000392.1_g000010 Rmu_ssc0000421.1_g000062 Rmu_ssc0000479.1_g000006
rosa_roxburghii	Rroxscaffold_153G00436600 Rroxscaffold_1G00008580 Rroxscaffold_1G00016770 Rroxscaffold_1G00029550 Rroxscaffold_1G00036450 Rroxscaffold_1G00040410 Rroxscaffold_1G00047110 Rroxscaffold_1G00060570 Rroxscaffold_2G00081500 Rroxscaffold_2G00081510 Rroxscaffold_2G00086080 Rroxscaffold_2G00099620 Rroxscaffold_2G00099630 Rroxscaffold_2G00099640 Rroxscaffold_2G00109170 Rroxscaffold_2G00127750 Rroxscaffold_2G00128590 Rroxscaffold_2G00130780 Rroxscaffold_2G00131040 Rroxscaffold_2G00143160 Rroxscaffold_3G00229280 Rroxscaffold_3G00229290 Rroxscaffold_3G00229970 Rroxscaffold_3G00242860 Rroxscaffold_3G00242890 Rroxscaffold_3G00242900 Rroxscaffold_3G00248200 Rroxscaffold_4G00284550 Rroxscaffold_4G00288780 Rroxscaffold_4G00298620 Rroxscaffold_4G00298630 Rroxscaffold_4G00312420 Rroxscaffold_4G00320310 Rroxscaffold_4G00322220 Rroxscaffold_4G00323600 Rroxscaffold_4G00331830 Rroxscaffold_4G00332010 Rroxscaffold_4G00332020 Rroxscaffold_5G00344470 Rroxscaffold_5G00345310 Rroxscaffold_5G00356120 Rroxscaffold_5G00368700 Rroxscaffold_5G00379820 Rroxscaffold_5G00382480 Rroxscaffold_6G00395080 Rroxscaffold_6G00405520 Rroxscaffold_6G00428210 Rroxscaffold_7G00193460
rosa_samantha	Rh7CG413200 Rh7DG284900

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccI	GTMKAC	1 cut(s)	427
AciI	CCGC	2 cut(s)	20, 80
AclWI	GGATC	1 cut(s)	30
AcsI	RAATTY	2 cut(s)	130, 441
AfaI	GTAC	3 cut(s)	274, 346, 494
AfiI	CCNNNNNNNGG	1 cut(s)	263
AflIII	ACRYGT	1 cut(s)	213
AgsI	TTSAA	3 cut(s)	53, 137, 287
AluBI	AGCT	2 cut(s)	339, 552
AluI	AGCT	2 cut(s)	339, 552
Alw26I	GTCTC	2 cut(s)	77, 198
AlwI	GGATC	1 cut(s)	30
AoxI	GGCC	3 cut(s)	242, 254, 265
ApeKI	GCWGC	3 cut(s)	118, 200, 336
ApoI	RAATTY	2 cut(s)	130, 441
AsuHPI	GGTGA	1 cut(s)	23
AsuII	TTCGAA	1 cut(s)	261
BarI	GAAGNNNNNNTAC	2 cut(s)	337, 369
BbsI	GAAGAC	2 cut(s)	311, 398
BbvI	GCAGC	3 cut(s)	130, 187, 348
BccI	CCATC	1 cut(s)	46
BcoDI	GTCTC	2 cut(s)	77, 198
BfaI	CTAG	2 cut(s)	378, 556
BfmI	CTRYAG	1 cut(s)	334
BglII	AGATCT	1 cut(s)	374
BisI	GCNGC	3 cut(s)	119, 201, 337
BlpI	GCTNAGC	1 cut(s)	98
BlsI	GCNGC	3 cut(s)	120, 202, 338
BmiI	GGNNCC	1 cut(s)	386
BmrI	ACTGGG	1 cut(s)	377
BmsI	GCATC	2 cut(s)	163, 532
BmuI	ACTGGG	1 cut(s)	377
BpiI	GAAGAC	2 cut(s)	311, 398
BplI	GAGNNNNNCTC	2 cut(s)	178, 210
Bpu1102I	GCTNAGC	1 cut(s)	98
Bpu14I	TTCGAA	1 cut(s)	261
BsaJI	CCNNGG	1 cut(s)	251
BsaWI	WCCGGW	1 cut(s)	495
Bsc4I	CCNNNNNNNGG	1 cut(s)	263
Bse1I	ACTGG	1 cut(s)	372
BseDI	CCNNGG	1 cut(s)	251
BseLI	CCNNNNNNNGG	1 cut(s)	263
BseNI	ACTGG	1 cut(s)	372
BseXI	GCAGC	3 cut(s)	130, 187, 348
BshFI	GGCC	3 cut(s)	244, 256, 267
BsiSI	CCGG	1 cut(s)	496
BslI	CCNNNNNNNGG	1 cut(s)	263
BsmAI	GTCTC	2 cut(s)	77, 198
BsmBI	CGTCTC	1 cut(s)	77
BsmI	GAATGC	1 cut(s)	513
BsnI	GGCC	3 cut(s)	244, 256, 267
Bsp119I	TTCGAA	1 cut(s)	261
Bsp1407I	TGTACA	1 cut(s)	344
Bsp143I	GATC	2 cut(s)	22, 374
Bsp1720I	GCTNAGC	1 cut(s)	98
BspACI	CCGC	2 cut(s)	20, 80
BspANI	GGCC	3 cut(s)	244, 256, 267
BspHI	TCATGA	1 cut(s)	538
BspLI	GGNNCC	1 cut(s)	386
BspMAI	CTGCAG	1 cut(s)	338
BspPI	GGATC	1 cut(s)	30
BspT104I	TTCGAA	1 cut(s)	261
BsrGI	TGTACA	1 cut(s)	344
BsrI	ACTGG	1 cut(s)	372
BssECI	CCNNGG	1 cut(s)	251
BssMI	GATC	2 cut(s)	22, 374
BssT1I	CCWWGG	1 cut(s)	251
Bst4CI	ACNGT	2 cut(s)	310, 449
BstAUI	TGTACA	1 cut(s)	344
BstBI	TTCGAA	1 cut(s)	261
BstDEI	CTNAG	1 cut(s)	98
BstENI	CCTNNNNNAGG	1 cut(s)	261
BstKTI	GATC	2 cut(s)	25, 377
BstMAI	GTCTC	2 cut(s)	77, 198
BstMBI	GATC	2 cut(s)	22, 374
BstMWI	GCNNNNNNNGC	3 cut(s)	94, 115, 241
BstNSI	RCATGY	2 cut(s)	109, 217
BstSFI	CTRYAG	1 cut(s)	334
BstV1I	GCAGC	3 cut(s)	130, 187, 348
BstV2I	GAAGAC	2 cut(s)	311, 398
BstX2I	RGATCY	2 cut(s)	22, 374
BstYI	RGATCY	2 cut(s)	22, 374
BsuRI	GGCC	3 cut(s)	244, 256, 267
CciI	TCATGA	1 cut(s)	538
CseI	GACGC	1 cut(s)	94
Csp6I	GTAC	3 cut(s)	273, 345, 493
CviAII	CATG	6 cut(s)	89, 106, 197, 214, 527, 539
CviQI	GTAC	3 cut(s)	273, 345, 493
DdeI	CTNAG	1 cut(s)	98
DpnI	GATC	2 cut(s)	24, 376
DpnII	GATC	2 cut(s)	22, 374
EciI	GGCGGA	2 cut(s)	35, 95
Eco130I	CCWWGG	1 cut(s)	251
EcoNI	CCTNNNNNAGG	1 cut(s)	261
EcoT14I	CCWWGG	1 cut(s)	251
ErhI	CCWWGG	1 cut(s)	251
Esp3I	CGTCTC	1 cut(s)	77
FaeI	CATG	6 cut(s)	92, 109, 200, 217, 530, 542
FatI	CATG	6 cut(s)	88, 105, 196, 213, 526, 538
FblI	GTMKAC	1 cut(s)	427
Fnu4HI	GCNGC	3 cut(s)	119, 201, 337
Fsp4HI	GCNGC	3 cut(s)	119, 201, 337
FspBI	CTAG	2 cut(s)	378, 556
GluI	GCNGC	3 cut(s)	119, 201, 337
HaeIII	GGCC	3 cut(s)	244, 256, 267
HapII	CCGG	1 cut(s)	496
HgaI	GACGC	1 cut(s)	94
Hin1II	CATG	6 cut(s)	92, 109, 200, 217, 530, 542
HincII	GTYRAC	1 cut(s)	211
HindII	GTYRAC	1 cut(s)	211
HinfI	GANTC	2 cut(s)	191, 424
HpaII	CCGG	1 cut(s)	496
HphI	GGTGA	1 cut(s)	23
Hpy166II	GTNNAC	3 cut(s)	211, 347, 428
Hpy188I	TCNGA	3 cut(s)	173, 461, 506
Hpy188III	TCNNGA	1 cut(s)	539
Hpy8I	GTNNAC	3 cut(s)	211, 347, 428
Hpy99I	CGWCG	1 cut(s)	465
HpyAV	CCTTC	2 cut(s)	257, 493
HpyCH4III	ACNGT	2 cut(s)	310, 449
HpyCH4IV	ACGT	1 cut(s)	463
HpyCH4V	TGCA	6 cut(s)	44, 315, 323, 336, 454, 511
HpyF10VI	GCNNNNNNNGC	3 cut(s)	94, 115, 241
HpyF3I	CTNAG	1 cut(s)	98
HpySE526I	ACGT	1 cut(s)	463
Hsp92II	CATG	6 cut(s)	92, 109, 200, 217, 530, 542
Kzo9I	GATC	2 cut(s)	22, 374
LmnI	GCTCC	1 cut(s)	549
LpnPI	CCDG	4 cut(s)	353, 401, 432, 509
Lsp1109I	GCAGC	3 cut(s)	130, 187, 348
LweI	GCATC	2 cut(s)	163, 532
MaeI	CTAG	2 cut(s)	378, 556
MaeII	ACGT	1 cut(s)	463
MaeIII	GTNAC	2 cut(s)	11, 143
MalI	GATC	2 cut(s)	24, 376
MboI	GATC	2 cut(s)	22, 374
MboII	GAAGA	4 cut(s)	308, 316, 384, 403
MflI	RGATCY	2 cut(s)	22, 374
MluCI	AATT	6 cut(s)	53, 130, 316, 325, 441, 455
MlyI	GAGTC	2 cut(s)	200, 433
MmeI	TCCRAC	1 cut(s)	484
MnlI	CCTC	3 cut(s)	255, 274, 375
MseI	TTAA	3 cut(s)	56, 218, 363
MspI	CCGG	1 cut(s)	496
Mva1269I	GAATGC	1 cut(s)	513
MwoI	GCNNNNNNNGC	3 cut(s)	94, 115, 241
NdeII	GATC	2 cut(s)	22, 374
NlaIII	CATG	6 cut(s)	92, 109, 200, 217, 530, 542
NlaIV	GGNNCC	1 cut(s)	386
NmuCI	GTSAC	2 cut(s)	11, 143
NspI	RCATGY	2 cut(s)	109, 217
NspV	TTCGAA	1 cut(s)	261
PagI	TCATGA	1 cut(s)	538
PciI	ACATGT	1 cut(s)	213
PctI	GAATGC	1 cut(s)	513
PkrI	GCNGC	3 cut(s)	120, 202, 338
PleI	GAGTC	2 cut(s)	199, 432
PpsI	GAGTC	2 cut(s)	199, 432
PscI	ACATGT	1 cut(s)	213
PspN4I	GGNNCC	1 cut(s)	386
PstI	CTGCAG	1 cut(s)	338
PsuI	RGATCY	2 cut(s)	22, 374
RsaI	GTAC	3 cut(s)	274, 346, 494
RsaNI	GTAC	3 cut(s)	273, 345, 493
SaqAI	TTAA	3 cut(s)	56, 218, 363
SatI	GCNGC	3 cut(s)	119, 201, 337
Sau3AI	GATC	2 cut(s)	22, 374
SchI	GAGTC	2 cut(s)	200, 433
SetI	ASST	6 cut(s)	285, 341, 466, 504, 546, 554
SfaNI	GCATC	2 cut(s)	163, 532
SfcI	CTRYAG	1 cut(s)	334
SfuI	TTCGAA	1 cut(s)	261
Sse9I	AATT	6 cut(s)	53, 130, 316, 325, 441, 455
SsiI	CCGC	2 cut(s)	20, 80
SspMI	CTAG	2 cut(s)	378, 556
StyI	CCWWGG	1 cut(s)	251
TaaI	ACNGT	2 cut(s)	310, 449
TaiI	ACGT	1 cut(s)	466
TaqI	TCGA	2 cut(s)	73, 261
TasI	AATT	6 cut(s)	53, 130, 316, 325, 441, 455
TatI	WGTACW	1 cut(s)	344
Tru1I	TTAA	3 cut(s)	56, 218, 363
Tru9I	TTAA	3 cut(s)	56, 218, 363
TseFI	GTSAC	2 cut(s)	11, 143
TseI	GCWGC	3 cut(s)	118, 200, 336
Tsp45I	GTSAC	2 cut(s)	11, 143
TspDTI	ATGAA	1 cut(s)	527
TspGWI	ACGGA	2 cut(s)	373, 425
XagI	CCTNNNNNAGG	1 cut(s)	261
XapI	RAATTY	2 cut(s)	130, 441
XceI	RCATGY	2 cut(s)	109, 217
XmiI	GTMKAC	1 cut(s)	427
XspI	CTAG	2 cut(s)	378, 556

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.