Basic Information

Type: gene

Biological Identity

Species

rosa_roxburghii

Chromosome

GWHEROQ00000001

Orthogroup ID

OG0000314

Physical Location & Seq

Genomic Coordinates Reverse (-)

53202546 .. 53205063

Gene Structure 2518 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rroxscaffold_1G00036450.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 714 bp

ATGCCTGGAAAGTGGACGAGAGGCAAACAAATACTTGATATGCCTATCTTTGAAGAGGAGATCAATTCATCAAATTTTGGTGACTCTAAATTTGATCTCGATGCGGAGCCAATCTATGATGAATATGATGATAATTACAATTTGATTATTGGTTCTAAAAATCATATGCAGGAGTACAAGTCTTTTGAGGCTCTTGATCATGAGAATTTTAACCAACAAGTGGTTAAATATAATGGCCAATCTGTGGCTTATTCTGAAGACACCATGTTCTATGACATGTTAGTTGGCGACAAAGCCGATCTTGGGACACCATCATCTCCAAAATTCCAATTGAAGATCATGCTTCATCAACCAACAAAGATACTTGGGGGGCAATATTACTCCTCATGTGAGCCAATTTTCTTCCAAGTTTTCGACACGAAGTATCTTTGTTGCTTTCCTACAAGCTCTCACAGGGAGAAGTTTTCATGGATATTTTCGTCGGTAAAAAATAAAGAATTTGGATGCGTGTCTACATGGGCTTTAGCAGCTCACCGCAAGGAAATAGGTTCCTTGGACTCTGCGCGTGGGAATTATTTGCGCGAGATTTTATGGGCGCGAGGACATCAGCGACTGGCCGCGAGCGAGCGACCGCATAAGCGAGTGACCACGAAAGAGATGGCCGCGAAAAGAATTAACTCGCAAAGGAGGCCAACAGTAGTGGTGTTCGCGTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003676 GO:0003723 GO:0003824 GO:0004652 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005829 GO:0006139 GO:0006276 GO:0006378 GO:0006396 GO:0006397 GO:0006725 GO:0006807 GO:0008150 GO:0008152 GO:0009451 GO:0009987 GO:0010467 GO:0016070 GO:0016071 GO:0016740 GO:0016772 GO:0016779 GO:0031123 GO:0031124 GO:0034641 GO:0043170 GO:0043412 GO:0043631 GO:0044237 GO:0044238 GO:0044424 GO:0044444 GO:0044464 GO:0046483 GO:0070566 GO:0071704 GO:0090304 GO:0097159 GO:1901360 GO:1901363

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

PolyA_pol PolyA_pol_RNAbd

Protein Analysis

237

Amino Acids

27.39

Weight (kDa)

7.05

Isoelectric Point (pI)

46.35

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0000314)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_1g02272 FvH4_1g22661 FvH4_2g10242 FvH4_2g34051 FvH4_3g19221 FvH4_3g29651 FvH4_3g30891 FvH4_4g11061 FvH4_5g09250 FvH4_5g15302 FvH4_5g15303 FvH4_5g15304 FvH4_5g28521 FvH4_6g23591 FvH4_7g05710 FvH4_7g19520
pyrus_communis	pycom07g06330
rosa_chinensis	RchiOBHm_Chr5g0027301 RchiOBHm_Chr6g0251451 RchiOBHm_Chr6g0274861
rosa_laevigata	RLG00000007850
rosa_multiflora	Rmu_co8230721.1_g000001 Rmu_sc0000271.1_g000027 Rmu_sc0000303.1_g000024 Rmu_sc0000368.1_g000024 Rmu_sc0000621.1_g000037 Rmu_sc0000693.1_g000081 Rmu_sc0001229.1_g000006 Rmu_sc0001373.1_g000003 Rmu_sc0001459.1_g000001 Rmu_sc0001744.1_g000002 Rmu_sc0001909.1_g000002 Rmu_sc0002053.1_g000012 Rmu_sc0002060.1_g000015 Rmu_sc0002119.1_g000036 Rmu_sc0002177.1_g000007 Rmu_sc0002822.1_g000024 Rmu_sc0002965.1_g000015 Rmu_sc0003363.1_g000051 Rmu_sc0003500.1_g000013 Rmu_sc0004191.1_g000020 Rmu_sc0004904.1_g000032 Rmu_sc0005325.1_g000008 Rmu_sc0005947.1_g000040 Rmu_sc0006475.1_g000001 Rmu_sc0006522.1_g000019 Rmu_sc0007102.1_g000005 Rmu_sc0007810.1_g000003 Rmu_sc0008339.1_g000025 Rmu_sc0008698.1_g000004 Rmu_sc0009313.1_g000006 Rmu_sc0009850.1_g000006 Rmu_sc0010598.1_g000003 Rmu_sc0011162.1_g000002 Rmu_sc0011824.1_g000004 Rmu_sc0011900.1_g000010 Rmu_sc0012291.1_g000006 Rmu_sc0012619.1_g000003 Rmu_sc0014679.1_g000001 Rmu_sc0019053.1_g000001 Rmu_sc0021462.1_g000003 Rmu_sc0024172.1_g000001 Rmu_sc0024173.1_g000001 Rmu_ssc0000052.1_g000016 Rmu_ssc0000392.1_g000010 Rmu_ssc0000421.1_g000062 Rmu_ssc0000479.1_g000006
rosa_roxburghii	Rroxscaffold_153G00436600 Rroxscaffold_1G00008580 Rroxscaffold_1G00016770 Rroxscaffold_1G00029550 Rroxscaffold_1G00036450 Rroxscaffold_1G00040410 Rroxscaffold_1G00047110 Rroxscaffold_1G00060570 Rroxscaffold_2G00081500 Rroxscaffold_2G00081510 Rroxscaffold_2G00086080 Rroxscaffold_2G00099620 Rroxscaffold_2G00099630 Rroxscaffold_2G00099640 Rroxscaffold_2G00109170 Rroxscaffold_2G00127750 Rroxscaffold_2G00128590 Rroxscaffold_2G00130780 Rroxscaffold_2G00131040 Rroxscaffold_2G00143160 Rroxscaffold_3G00229280 Rroxscaffold_3G00229290 Rroxscaffold_3G00229970 Rroxscaffold_3G00242860 Rroxscaffold_3G00242890 Rroxscaffold_3G00242900 Rroxscaffold_3G00248200 Rroxscaffold_4G00284550 Rroxscaffold_4G00288780 Rroxscaffold_4G00298620 Rroxscaffold_4G00298630 Rroxscaffold_4G00312420 Rroxscaffold_4G00320310 Rroxscaffold_4G00322220 Rroxscaffold_4G00323600 Rroxscaffold_4G00331830 Rroxscaffold_4G00332010 Rroxscaffold_4G00332020 Rroxscaffold_5G00344470 Rroxscaffold_5G00345310 Rroxscaffold_5G00356120 Rroxscaffold_5G00368700 Rroxscaffold_5G00379820 Rroxscaffold_5G00382480 Rroxscaffold_6G00395080 Rroxscaffold_6G00405520 Rroxscaffold_6G00428210 Rroxscaffold_7G00193460
rosa_samantha	Rh7CG413200 Rh7DG284900

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB7I	CCANNNNNTGG	2 cut(s)	220, 244
AccI	GTMKAC	1 cut(s)	512
AccII	CGCG	6 cut(s)	565, 582, 598, 620, 665, 710
AciI	CCGC	5 cut(s)	104, 535, 618, 632, 663
AcoI	YGGCCR	3 cut(s)	235, 615, 660
AcsI	RAATTY	5 cut(s)	73, 89, 205, 323, 497
AcuI	CTGAAG	1 cut(s)	276
AfaI	GTAC	1 cut(s)	176
AfiI	CCNNNNNNNGG	3 cut(s)	220, 244, 303
AflIII	ACRYGT	1 cut(s)	276
AgsI	TTSAA	2 cut(s)	53, 334
AjnI	CCWGG	1 cut(s)	4
AluBI	AGCT	2 cut(s)	447, 530
AluI	AGCT	2 cut(s)	447, 530
AlwNI	CAGNNNCTG	1 cut(s)	613
AoxI	GGCC	4 cut(s)	235, 615, 660, 689
ApeKI	GCWGC	1 cut(s)	527
ApoI	RAATTY	5 cut(s)	73, 89, 205, 323, 497
ArsI	GACNNNNNNTTYG	2 cut(s)	74, 106
AspLEI	GCGC	3 cut(s)	565, 582, 598
AsuHPI	GGTGA	2 cut(s)	92, 524
BalI	TGGCCA	1 cut(s)	237
BbsI	GAAGAC	1 cut(s)	264
BbvI	GCAGC	1 cut(s)	539
BccI	CCATC	2 cut(s)	319, 652
BciT130I	CCWGG	1 cut(s)	6
BclI	TGATCA	1 cut(s)	196
BisI	GCNGC	3 cut(s)	528, 618, 663
BlsI	GCNGC	3 cut(s)	529, 619, 664
Bme1390I	CCNGG	1 cut(s)	6
BmiI	GGNNCC	2 cut(s)	108, 550
BmrFI	CCNGG	1 cut(s)	6
BmsI	GCATC	2 cut(s)	91, 494
BpiI	GAAGAC	1 cut(s)	264
BsaJI	CCNNGG	1 cut(s)	552
BsaXI	ACNNNNNCTCC	2 cut(s)	164, 194
Bsc4I	CCNNNNNNNGG	3 cut(s)	220, 244, 303
Bse1I	ACTGG	1 cut(s)	618
BseBI	CCWGG	1 cut(s)	6
BseDI	CCNNGG	1 cut(s)	552
BseGI	GGATG	1 cut(s)	509
BseLI	CCNNNNNNNGG	3 cut(s)	220, 244, 303
BseNI	ACTGG	1 cut(s)	618
BseRI	GAGGAG	2 cut(s)	71, 373
BseXI	GCAGC	1 cut(s)	539
Bsh1236I	CGCG	6 cut(s)	565, 582, 598, 620, 665, 710
Bsh1285I	CGRYCG	1 cut(s)	632
BshFI	GGCC	4 cut(s)	237, 617, 662, 691
BsiEI	CGRYCG	1 cut(s)	632
BslFI	GGGAC	1 cut(s)	319
BslI	CCNNNNNNNGG	3 cut(s)	220, 244, 303
BsmFI	GGGAC	1 cut(s)	319
BsnI	GGCC	4 cut(s)	237, 617, 662, 691
Bsp143I	GATC	5 cut(s)	60, 94, 196, 298, 336
BspACI	CCGC	5 cut(s)	104, 535, 618, 632, 663
BspANI	GGCC	4 cut(s)	237, 617, 662, 691
BspFNI	CGCG	6 cut(s)	565, 582, 598, 620, 665, 710
BspHI	TCATGA	1 cut(s)	199
BspLI	GGNNCC	2 cut(s)	108, 550
BsrI	ACTGG	1 cut(s)	618
BssECI	CCNNGG	1 cut(s)	552
BssMI	GATC	5 cut(s)	60, 94, 196, 298, 336
BssT1I	CCWWGG	1 cut(s)	552
Bst2UI	CCWGG	1 cut(s)	6
Bst4CI	ACNGT	1 cut(s)	697
Bst6I	CTCTTC	1 cut(s)	48
BstC8I	GCNNGC	2 cut(s)	622, 626
BstF5I	GGATG	1 cut(s)	509
BstFNI	CGCG	6 cut(s)	565, 582, 598, 620, 665, 710
BstHHI	GCGC	3 cut(s)	565, 582, 598
BstKTI	GATC	5 cut(s)	63, 97, 199, 301, 339
BstMBI	GATC	5 cut(s)	60, 94, 196, 298, 336
BstMCI	CGRYCG	1 cut(s)	632
BstMWI	GCNNNNNNNGC	2 cut(s)	527, 688
BstNI	CCWGG	1 cut(s)	6
BstNSI	RCATGY	1 cut(s)	280
BstSCI	CCNGG	1 cut(s)	4
BstUI	CGCG	6 cut(s)	565, 582, 598, 620, 665, 710
BstV1I	GCAGC	1 cut(s)	539
BstV2I	GAAGAC	1 cut(s)	264
BsuRI	GGCC	4 cut(s)	237, 617, 662, 691
BtsCI	GGATG	1 cut(s)	509
Cac8I	GCNNGC	2 cut(s)	622, 626
CaiI	CAGNNNCTG	1 cut(s)	613
CciI	TCATGA	1 cut(s)	199
CfoI	GCGC	3 cut(s)	565, 582, 598
Csp6I	GTAC	1 cut(s)	175
CspCI	CAANNNNNGTGG	1 cut(s)	681
CviAII	CATG	7 cut(s)	200, 265, 277, 340, 387, 468, 516
CviQI	GTAC	1 cut(s)	175
DpnI	GATC	5 cut(s)	62, 96, 198, 300, 338
DpnII	GATC	5 cut(s)	60, 94, 196, 298, 336
EaeI	YGGCCR	3 cut(s)	235, 615, 660
Eam1104I	CTCTTC	1 cut(s)	48
EarI	CTCTTC	1 cut(s)	48
Eco130I	CCWWGG	1 cut(s)	552
Eco57I	CTGAAG	1 cut(s)	276
EcoRII	CCWGG	1 cut(s)	4
EcoT14I	CCWWGG	1 cut(s)	552
ErhI	CCWWGG	1 cut(s)	552
FaeI	CATG	7 cut(s)	203, 268, 280, 343, 390, 471, 519
FalI	AAGNNNNNCTT	2 cut(s)	285, 317
FaqI	GGGAC	1 cut(s)	319
FatI	CATG	7 cut(s)	199, 264, 276, 339, 386, 467, 515
FauNDI	CATATG	1 cut(s)	165
FbaI	TGATCA	1 cut(s)	196
FblI	GTMKAC	1 cut(s)	512
Fnu4HI	GCNGC	3 cut(s)	528, 618, 663
FokI	GGATG	1 cut(s)	516
Fsp4HI	GCNGC	3 cut(s)	528, 618, 663
GlaI	GCGC	3 cut(s)	564, 581, 597
GluI	GCNGC	3 cut(s)	528, 618, 663
HaeIII	GGCC	4 cut(s)	237, 617, 662, 691
HhaI	GCGC	3 cut(s)	565, 582, 598
Hin1II	CATG	7 cut(s)	203, 268, 280, 343, 390, 471, 519
Hin6I	GCGC	3 cut(s)	563, 580, 596
HinP1I	GCGC	3 cut(s)	563, 580, 596
HinfI	GANTC	2 cut(s)	83, 557
HphI	GGTGA	2 cut(s)	92, 524
Hpy166II	GTNNAC	2 cut(s)	15, 513
Hpy188I	TCNGA	1 cut(s)	256
Hpy188III	TCNNGA	3 cut(s)	98, 194, 200
Hpy8I	GTNNAC	2 cut(s)	15, 513
Hpy99I	CGWCG	1 cut(s)	484
HpyCH4III	ACNGT	1 cut(s)	697
HpyCH4V	TGCA	1 cut(s)	169
HpyF10VI	GCNNNNNNNGC	2 cut(s)	527, 688
Hsp92II	CATG	7 cut(s)	203, 268, 280, 343, 390, 471, 519
HspAI	GCGC	3 cut(s)	563, 580, 596
Ksp22I	TGATCA	1 cut(s)	196
Kzo9I	GATC	5 cut(s)	60, 94, 196, 298, 336
LmnI	GCTCC	1 cut(s)	106
LpnPI	CCDG	4 cut(s)	18, 155, 439, 599
Lsp1109I	GCAGC	1 cut(s)	539
LweI	GCATC	2 cut(s)	91, 494
MaeIII	GTNAC	2 cut(s)	80, 643
MalI	GATC	5 cut(s)	62, 96, 198, 300, 338
MboI	GATC	5 cut(s)	60, 94, 196, 298, 336
MboII	GAAGA	4 cut(s)	65, 269, 346, 394
MfeI	CAATTG	1 cut(s)	329
MlsI	TGGCCA	1 cut(s)	237
MluNI	TGGCCA	1 cut(s)	237
MlyI	GAGTC	2 cut(s)	77, 551
MnlI	CCTC	6 cut(s)	14, 49, 181, 394, 593, 681
Mox20I	TGGCCA	1 cut(s)	237
MscI	TGGCCA	1 cut(s)	237
MseI	TTAA	3 cut(s)	210, 225, 675
Msp20I	TGGCCA	1 cut(s)	237
MspR9I	CCNGG	1 cut(s)	6
MunI	CAATTG	1 cut(s)	329
MvaI	CCWGG	1 cut(s)	6
MvnI	CGCG	6 cut(s)	565, 582, 598, 620, 665, 710
MwoI	GCNNNNNNNGC	2 cut(s)	527, 688
NdeI	CATATG	1 cut(s)	165
NdeII	GATC	5 cut(s)	60, 94, 196, 298, 336
NlaIII	CATG	7 cut(s)	203, 268, 280, 343, 390, 471, 519
NlaIV	GGNNCC	2 cut(s)	108, 550
NmuCI	GTSAC	2 cut(s)	80, 643
NspI	RCATGY	1 cut(s)	280
PagI	TCATGA	1 cut(s)	199
PciI	ACATGT	1 cut(s)	276
PflMI	CCANNNNNTGG	2 cut(s)	220, 244
PkrI	GCNGC	3 cut(s)	529, 619, 664
PleI	GAGTC	2 cut(s)	77, 551
PpsI	GAGTC	2 cut(s)	77, 551
PscI	ACATGT	1 cut(s)	276
Psp6I	CCWGG	1 cut(s)	4
PspGI	CCWGG	1 cut(s)	4
PspN4I	GGNNCC	2 cut(s)	108, 550
PstNI	CAGNNNCTG	1 cut(s)	613
RsaI	GTAC	1 cut(s)	176
RsaNI	GTAC	1 cut(s)	175
SaqAI	TTAA	3 cut(s)	210, 225, 675
SatI	GCNGC	3 cut(s)	528, 618, 663
Sau3AI	GATC	5 cut(s)	60, 94, 196, 298, 336
SchI	GAGTC	2 cut(s)	77, 551
ScrFI	CCNGG	1 cut(s)	6
SetI	ASST	3 cut(s)	449, 532, 550
SfaNI	GCATC	2 cut(s)	91, 494
SsiI	CCGC	5 cut(s)	104, 535, 618, 632, 663
SspI	AATATT	1 cut(s)	377
StyD4I	CCNGG	1 cut(s)	4
StyI	CCWWGG	1 cut(s)	552
TaaI	ACNGT	1 cut(s)	697
TaqI	TCGA	2 cut(s)	99, 414
TatI	WGTACW	1 cut(s)	174
TauI	GCSGC	2 cut(s)	620, 665
Tru1I	TTAA	3 cut(s)	210, 225, 675
Tru9I	TTAA	3 cut(s)	210, 225, 675
TseFI	GTSAC	2 cut(s)	80, 643
TseI	GCWGC	1 cut(s)	527
Tsp45I	GTSAC	2 cut(s)	80, 643
TspDTI	ATGAA	4 cut(s)	57, 135, 335, 456
Van91I	CCANNNNNTGG	2 cut(s)	220, 244
XapI	RAATTY	5 cut(s)	73, 89, 205, 323, 497
XceI	RCATGY	1 cut(s)	280
XcmI	CCANNNNNNNNNTGG	1 cut(s)	655
XmiI	GTMKAC	1 cut(s)	512

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.