FvH4_6g23591

Belongs to the tRNA nucleotidyltransferase poly(A) polymerase family

Basic Information

Type: gene
Biological Identity
fragaria_vesca
Fvb6
Physical Location & Seq
Forward (+)
17671181 .. 17672501
1321 bp
Loading structure...
UTR
Exon/CDS
Intron
FvH4_6g23591.t1

Sequence Viewer

Length: 1062 bp
ATGTCGACAAAAATAAGAATAAAACAAGTGCTGGTTCTCGTGAATGGACACAACGAAAAGGCTTTACAATGCCAAAATGTAAGGCCTACAGTTGACGAACATGTCCTTACCAAAAAGATTGAACTGCCTAGCATCCAATCTAATGACAAAAACTTTCGTTTAGACGAATTTACGTCCAAAGAAGAAATCACTTTACCAATCAATGGTGAAGTTCCACCTCCAACCGAGGACTACCATGGGGACCATGACCAGCAAATTCGCTCTGTTAATGTTAACGTGGCGTCTGAACAAGAAGTCATTCCCTCCATGGCAGAGACTCATACGACCATACATGCATATGAAGATGGTCAAAGTTGTGCTTTGCTTGCCTTTGGAACAAACTTAACTACTTGGCGTGGTCAGAATGATTATCAAAGACATGGTCAGCTTGTCCAGTTTACTTATCAATCACGTGCTATCCTCACTAAGCCAATTTGTGGCTTTGCTATTGATCTAGACAAGCTCCGCCGTGTAACGTGCAGATTAAGGCAAAACAATGGCTTTAATATTATATATAGGAAACGCGTTTACATCCAAATTCGGCCAGAATGGCAATTCAATGGGTTGTTCTATTATTCGCAATACAAATTAACTCTACCTTGTAACGTTCGAGCTCCTACCCTCTCAGGAAAAGAGTCTCATAATGATAGTCCCTTAGAGGCCTCTCACCATGAGGCTTACGGTTTTACTATGCCTACCGCTGAGGTAGAGTTCAGTTTGCCTCTCTATGTTGCTTTCAAGCATGATTTCGCAAGGGAGCCAATATATGATGAGTACGATGACGATTACAATTCGATCATTGGCTCCACAATCAATAGCGGATATGCGGCCAGTTCTAAACATGTCTCCCACAACGATATGGTAGTCGGCGACAATGATGATCTCAAGAACAGACGGTCCGCGAGAACGCAGTTGAAGATCATGCTCGGCCAAACGATAAGGGAGTCTCATGCCAGGAACATAACGGCGTCGAGGCTTGGAGTGAAGCATCAGTTGCCTCCCCTGTGGCCTTACGAAGGGTAA

Protein Analysis

354

Amino Acids

40.41

Weight (kDa)

6.57

Isoelectric Point (pI)

45.24

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready

Orthologous Genes (Group: OG0000314)

Species Orthologous Gene IDs
fragaria_vesca FvH4_1g02272 FvH4_1g22661 FvH4_2g10242 FvH4_2g34051 FvH4_3g19221 FvH4_3g29651 FvH4_3g30891 FvH4_4g11061 FvH4_5g09250 FvH4_5g15302 FvH4_5g15303 FvH4_5g15304 FvH4_5g28521 FvH4_6g23591 FvH4_7g05710 FvH4_7g19520
pyrus_communis pycom07g06330
rosa_chinensis RchiOBHm_Chr5g0027301 RchiOBHm_Chr6g0251451 RchiOBHm_Chr6g0274861
rosa_laevigata RLG00000007850
rosa_multiflora Rmu_co8230721.1_g000001 Rmu_sc0000271.1_g000027 Rmu_sc0000303.1_g000024 Rmu_sc0000368.1_g000024 Rmu_sc0000621.1_g000037 Rmu_sc0000693.1_g000081 Rmu_sc0001229.1_g000006 Rmu_sc0001373.1_g000003 Rmu_sc0001459.1_g000001 Rmu_sc0001744.1_g000002 Rmu_sc0001909.1_g000002 Rmu_sc0002053.1_g000012 Rmu_sc0002060.1_g000015 Rmu_sc0002119.1_g000036 Rmu_sc0002177.1_g000007 Rmu_sc0002822.1_g000024 Rmu_sc0002965.1_g000015 Rmu_sc0003363.1_g000051 Rmu_sc0003500.1_g000013 Rmu_sc0004191.1_g000020 Rmu_sc0004904.1_g000032 Rmu_sc0005325.1_g000008 Rmu_sc0005947.1_g000040 Rmu_sc0006475.1_g000001 Rmu_sc0006522.1_g000019 Rmu_sc0007102.1_g000005 Rmu_sc0007810.1_g000003 Rmu_sc0008339.1_g000025 Rmu_sc0008698.1_g000004 Rmu_sc0009313.1_g000006 Rmu_sc0009850.1_g000006 Rmu_sc0010598.1_g000003 Rmu_sc0011162.1_g000002 Rmu_sc0011824.1_g000004 Rmu_sc0011900.1_g000010 Rmu_sc0012291.1_g000006 Rmu_sc0012619.1_g000003 Rmu_sc0014679.1_g000001 Rmu_sc0019053.1_g000001 Rmu_sc0021462.1_g000003 Rmu_sc0024172.1_g000001 Rmu_sc0024173.1_g000001 Rmu_ssc0000052.1_g000016 Rmu_ssc0000392.1_g000010 Rmu_ssc0000421.1_g000062 Rmu_ssc0000479.1_g000006
rosa_roxburghii Rroxscaffold_153G00436600 Rroxscaffold_1G00008580 Rroxscaffold_1G00016770 Rroxscaffold_1G00029550 Rroxscaffold_1G00036450 Rroxscaffold_1G00040410 Rroxscaffold_1G00047110 Rroxscaffold_1G00060570 Rroxscaffold_2G00081500 Rroxscaffold_2G00081510 Rroxscaffold_2G00086080 Rroxscaffold_2G00099620 Rroxscaffold_2G00099630 Rroxscaffold_2G00099640 Rroxscaffold_2G00109170 Rroxscaffold_2G00127750 Rroxscaffold_2G00128590 Rroxscaffold_2G00130780 Rroxscaffold_2G00131040 Rroxscaffold_2G00143160 Rroxscaffold_3G00229280 Rroxscaffold_3G00229290 Rroxscaffold_3G00229970 Rroxscaffold_3G00242860 Rroxscaffold_3G00242890 Rroxscaffold_3G00242900 Rroxscaffold_3G00248200 Rroxscaffold_4G00284550 Rroxscaffold_4G00288780 Rroxscaffold_4G00298620 Rroxscaffold_4G00298630 Rroxscaffold_4G00312420 Rroxscaffold_4G00320310 Rroxscaffold_4G00322220 Rroxscaffold_4G00323600 Rroxscaffold_4G00331830 Rroxscaffold_4G00332010 Rroxscaffold_4G00332020 Rroxscaffold_5G00344470 Rroxscaffold_5G00345310 Rroxscaffold_5G00356120 Rroxscaffold_5G00368700 Rroxscaffold_5G00379820 Rroxscaffold_5G00382480 Rroxscaffold_6G00395080 Rroxscaffold_6G00405520 Rroxscaffold_6G00428210 Rroxscaffold_7G00193460
rosa_samantha Rh7CG413200 Rh7DG284900

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AasI GACNNNNNNGTC 1 cut(s) 101
AccB7I CCANNNNNTGG 2 cut(s) 203, 476
AccI GTMKAC 1 cut(s) 5
AccII CGCG 2 cut(s) 564, 941
AciI CCGC 5 cut(s) 505, 738, 858, 866, 939
AclI AACGTT 1 cut(s) 645
AcoI YGGCCR 3 cut(s) 581, 867, 967
AcsI RAATTY 3 cut(s) 167, 255, 576
AcvI CACGTG 1 cut(s) 452
AcyI GRCGYC 2 cut(s) 281, 1007
AfaI GTAC 1 cut(s) 815
AfiI CCNNNNNNNGG 3 cut(s) 203, 476, 1055
AflIII ACRYGT 3 cut(s) 100, 562, 880
AgsI TTSAA 4 cut(s) 122, 598, 778, 955
AjnI CCWGG 1 cut(s) 992
AloI GAACNNNNNNTCC 2 cut(s) 920, 952
AluBI AGCT 3 cut(s) 427, 502, 653
AluI AGCT 3 cut(s) 427, 502, 653
Alw21I GWGCWC 1 cut(s) 655
Alw26I GTCTC 4 cut(s) 308, 681, 889, 990
AoxI GGCC 6 cut(s) 83, 581, 699, 867, 967, 1046
ApoI RAATTY 3 cut(s) 167, 255, 576
ArsI GACNNNNNNTTYG 2 cut(s) 406, 438
Asp700I GAANNNNTTC 1 cut(s) 297
AspS9I GGNCC 2 cut(s) 241, 936
AsuHPI GGTGA 2 cut(s) 218, 698
AvaII GGWCC 2 cut(s) 241, 936
BanII GRGCYC 1 cut(s) 655
BauI CACGAG 1 cut(s) 38
BbrPI CACGTG 1 cut(s) 452
Bbv12I GWGCWC 1 cut(s) 655
BbvCI CCTCAGC 1 cut(s) 741
BccI CCATC 1 cut(s) 338
BceAI ACGGC 2 cut(s) 492, 1020
BciT130I CCWGG 1 cut(s) 994
BcoDI GTCTC 4 cut(s) 308, 681, 889, 990
BfaI CTAG 2 cut(s) 129, 494
BfmI CTRYAG 1 cut(s) 87
BglI GCCNNNNNGGC 1 cut(s) 589
BisI GCNGC 1 cut(s) 867
BlsI GCNGC 1 cut(s) 868
Bme1390I CCNGG 1 cut(s) 994
Bme18I GGWCC 2 cut(s) 241, 936
BmgT120I GGNCC 2 cut(s) 241, 936
BmiI GGNNCC 3 cut(s) 242, 798, 844
BmrFI CCNGG 1 cut(s) 994
BmsI GCATC 2 cut(s) 141, 1036
Bpu10I CCTNAGC 1 cut(s) 741
BpuEI CTTGAG 1 cut(s) 908
BsaAI YACGTR 1 cut(s) 452
BsaHI GRCGYC 2 cut(s) 281, 1007
BsaJI CCNNGG 3 cut(s) 225, 235, 306
Bsc4I CCNNNNNNNGG 3 cut(s) 203, 476, 1055
Bse1I ACTGG 2 cut(s) 433, 870
BseBI CCWGG 1 cut(s) 994
BseDI CCNNGG 3 cut(s) 225, 235, 306
BseGI GGATG 2 cut(s) 132, 570
BseLI CCNNNNNNNGG 3 cut(s) 203, 476, 1055
BseMII CTCAG 2 cut(s) 678, 732
BseNI ACTGG 2 cut(s) 433, 870
BsgI GTGCAG 1 cut(s) 538
Bsh1236I CGCG 2 cut(s) 564, 941
BshFI GGCC 6 cut(s) 85, 583, 701, 869, 969, 1048
BsiHKAI GWGCWC 1 cut(s) 655
BslFI GGGAC 2 cut(s) 254, 675
BslI CCNNNNNNNGG 3 cut(s) 203, 476, 1055
BsmAI GTCTC 4 cut(s) 308, 681, 889, 990
BsmFI GGGAC 2 cut(s) 254, 675
BsnI GGCC 6 cut(s) 85, 583, 701, 869, 969, 1048
Bsp1286I GDGCHC 1 cut(s) 655
Bsp143I GATC 4 cut(s) 490, 834, 919, 957
Bsp19I CCATGG 2 cut(s) 235, 306
BspACI CCGC 5 cut(s) 505, 738, 858, 866, 939
BspANI GGCC 6 cut(s) 85, 583, 701, 869, 969, 1048
BspCNI CTCAG 2 cut(s) 677, 733
BspFNI CGCG 2 cut(s) 564, 941
BspLI GGNNCC 3 cut(s) 242, 798, 844
BsrI ACTGG 2 cut(s) 433, 870
BssECI CCNNGG 3 cut(s) 225, 235, 306
BssMI GATC 4 cut(s) 490, 834, 919, 957
BssNI GRCGYC 2 cut(s) 281, 1007
BssSI CACGAG 1 cut(s) 38
BssT1I CCWWGG 2 cut(s) 235, 306
Bst2BI CACGAG 1 cut(s) 38
Bst2UI CCWGG 1 cut(s) 994
Bst4CI ACNGT 3 cut(s) 91, 722, 936
BstACI GRCGYC 2 cut(s) 281, 1007
BstAPI GCANNNNNTGC 1 cut(s) 1033
BstBAI YACGTR 1 cut(s) 452
BstC8I GCNNGC 1 cut(s) 366
BstDEI CTNAG 4 cut(s) 465, 664, 694, 741
BstDSI CCRYGG 2 cut(s) 235, 306
BstENI CCTNNNNNAGG 1 cut(s) 1053
BstF5I GGATG 2 cut(s) 132, 570
BstFNI CGCG 2 cut(s) 564, 941
BstKTI GATC 4 cut(s) 493, 837, 922, 960
BstMAI GTCTC 4 cut(s) 308, 681, 889, 990
BstMBI GATC 4 cut(s) 490, 834, 919, 957
BstMWI GCNNNNNNNGC 3 cut(s) 365, 589, 1033
BstNI CCWGG 1 cut(s) 994
BstNSI RCATGY 3 cut(s) 104, 335, 884
BstSCI CCNGG 1 cut(s) 992
BstSFI CTRYAG 1 cut(s) 87
BstUI CGCG 2 cut(s) 564, 941
BsuRI GGCC 6 cut(s) 85, 583, 701, 869, 969, 1048
BtgI CCRYGG 2 cut(s) 235, 306
BtsCI GGATG 2 cut(s) 132, 570
Cac8I GCNNGC 1 cut(s) 366
Cfr13I GGNCC 2 cut(s) 241, 936
CpoI CGGWCCG 1 cut(s) 936
CseI GACGC 2 cut(s) 270, 996
Csp6I GTAC 1 cut(s) 814
CspI CGGWCCG 1 cut(s) 936
CviQI GTAC 1 cut(s) 814
DdeI CTNAG 4 cut(s) 465, 664, 694, 741
DpnI GATC 4 cut(s) 492, 836, 921, 959
DpnII GATC 4 cut(s) 490, 834, 919, 957
DrdI GACNNNNNNGTC 1 cut(s) 101
DseDI GACNNNNNNGTC 1 cut(s) 101
EaeI YGGCCR 3 cut(s) 581, 867, 967
EciI GGCGGA 1 cut(s) 494
Ecl136II GAGCTC 1 cut(s) 653
Eco130I CCWWGG 2 cut(s) 235, 306
Eco147I AGGCCT 2 cut(s) 85, 701
Eco24I GRGCYC 1 cut(s) 655
Eco47I GGWCC 2 cut(s) 241, 936
Eco53kI GAGCTC 1 cut(s) 653
Eco72I CACGTG 1 cut(s) 452
EcoICRI GAGCTC 1 cut(s) 653
EcoNI CCTNNNNNAGG 1 cut(s) 1053
EcoRII CCWGG 1 cut(s) 992
EcoT14I CCWWGG 2 cut(s) 235, 306
EcoT22I ATGCAT 1 cut(s) 337
EcoT38I GRGCYC 1 cut(s) 655
ErhI CCWWGG 2 cut(s) 235, 306
FalI AAGNNNNNCTT 2 cut(s) 343, 375
FaqI GGGAC 2 cut(s) 254, 675
FauNDI CATATG 1 cut(s) 337
FblI GTMKAC 1 cut(s) 5
Fnu4HI GCNGC 1 cut(s) 867
FokI GGATG 2 cut(s) 119, 557
FriOI GRGCYC 1 cut(s) 655
Fsp4HI GCNGC 1 cut(s) 867
FspBI CTAG 2 cut(s) 129, 494
GluI GCNGC 1 cut(s) 867
HaeIII GGCC 6 cut(s) 85, 583, 701, 869, 969, 1048
HgaI GACGC 2 cut(s) 270, 996
Hin1I GRCGYC 2 cut(s) 281, 1007
HincII GTYRAC 3 cut(s) 6, 94, 274
HindII GTYRAC 3 cut(s) 6, 94, 274
HinfI GANTC 3 cut(s) 316, 674, 983
HpaI GTTAAC 1 cut(s) 274
HphI GGTGA 2 cut(s) 218, 698
Hpy166II GTNNAC 5 cut(s) 6, 94, 274, 438, 568
Hpy188I TCNGA 2 cut(s) 286, 402
Hpy188III TCNNGA 4 cut(s) 40, 494, 666, 925
Hpy8I GTNNAC 5 cut(s) 6, 94, 274, 438, 568
Hpy99I CGWCG 1 cut(s) 1012
HpyAV CCTTC 1 cut(s) 1049
HpyCH4III ACNGT 3 cut(s) 91, 722, 936
HpyCH4IV ACGT 5 cut(s) 173, 276, 451, 515, 645
HpyCH4V TGCA 2 cut(s) 335, 519
HpyF10VI GCNNNNNNNGC 3 cut(s) 365, 589, 1033
HpyF3I CTNAG 4 cut(s) 465, 664, 694, 741
HpySE526I ACGT 5 cut(s) 173, 276, 451, 515, 645
Hsp92I GRCGYC 2 cut(s) 281, 1007
KspAI GTTAAC 1 cut(s) 274
Kzo9I GATC 4 cut(s) 490, 834, 919, 957
LmnI GCTCC 4 cut(s) 507, 658, 796, 848
LpnPI CCDG 9 cut(s) 17, 263, 446, 597, 651, 883, 979, 1006, 1055
LweI GCATC 2 cut(s) 141, 1036
MaeI CTAG 2 cut(s) 129, 494
MaeII ACGT 5 cut(s) 173, 276, 451, 515, 645
MaeIII GTNAC 2 cut(s) 511, 641
MalI GATC 4 cut(s) 492, 836, 921, 959
MboI GATC 4 cut(s) 490, 834, 919, 957
MboII GAAGA 3 cut(s) 194, 353, 967
MhlI GDGCHC 1 cut(s) 655
MluCI AATT 7 cut(s) 167, 255, 471, 576, 593, 626, 829
MluI ACGCGT 1 cut(s) 562
MlyI GAGTC 3 cut(s) 310, 683, 992
MmeI TCCRAC 1 cut(s) 245
Mph1103I ATGCAT 1 cut(s) 337
MroXI GAANNNNTTC 1 cut(s) 297
MseI TTAA 6 cut(s) 267, 273, 383, 524, 543, 629
MslI CAYNNNNRTG 1 cut(s) 336
MspA1I CMGCKG 1 cut(s) 740
MspR9I CCNGG 1 cut(s) 994
MvaI CCWGG 1 cut(s) 994
MvnI CGCG 2 cut(s) 564, 941
MwoI GCNNNNNNNGC 3 cut(s) 365, 589, 1033
NcoI CCATGG 2 cut(s) 235, 306
NdeI CATATG 1 cut(s) 337
NdeII GATC 4 cut(s) 490, 834, 919, 957
NlaIV GGNNCC 3 cut(s) 242, 798, 844
NmeAIII GCCGAG 1 cut(s) 945
NsiI ATGCAT 1 cut(s) 337
NspI RCATGY 3 cut(s) 104, 335, 884
PceI AGGCCT 2 cut(s) 85, 701
PciI ACATGT 2 cut(s) 100, 880
PdmI GAANNNNTTC 1 cut(s) 297
PflFI GACNNNGTC 1 cut(s) 420
PflMI CCANNNNNTGG 2 cut(s) 203, 476
PkrI GCNGC 1 cut(s) 868
PleI GAGTC 3 cut(s) 310, 682, 991
PmaCI CACGTG 1 cut(s) 452
PmlI CACGTG 1 cut(s) 452
PpsI GAGTC 3 cut(s) 310, 682, 991
Ppu21I YACGTR 1 cut(s) 452
PscI ACATGT 2 cut(s) 100, 880
Psp124BI GAGCTC 1 cut(s) 655
Psp1406I AACGTT 1 cut(s) 645
Psp6I CCWGG 1 cut(s) 992
PspCI CACGTG 1 cut(s) 452
PspGI CCWGG 1 cut(s) 992
PspN4I GGNNCC 3 cut(s) 242, 798, 844
PspPI GGNCC 2 cut(s) 241, 936
PsyI GACNNNGTC 1 cut(s) 420
RsaI GTAC 1 cut(s) 815
RsaNI GTAC 1 cut(s) 814
RseI CAYNNNNRTG 1 cut(s) 336
Rsr2I CGGWCCG 1 cut(s) 936
RsrII CGGWCCG 1 cut(s) 936
SacI GAGCTC 1 cut(s) 655
SalI GTCGAC 1 cut(s) 4
SaqAI TTAA 6 cut(s) 267, 273, 383, 524, 543, 629
SatI GCNGC 1 cut(s) 867
Sau3AI GATC 4 cut(s) 490, 834, 919, 957
Sau96I GGNCC 2 cut(s) 241, 936
SchI GAGTC 3 cut(s) 310, 683, 992
ScrFI CCNGG 1 cut(s) 994
SduI GDGCHC 1 cut(s) 655
SfaNI GCATC 2 cut(s) 141, 1036
SfcI CTRYAG 1 cut(s) 87
SinI GGWCC 2 cut(s) 241, 936
SmiMI CAYNNNNRTG 1 cut(s) 336
SmlI CTYRAG 1 cut(s) 923
SmoI CTYRAG 1 cut(s) 923
Sse9I AATT 7 cut(s) 167, 255, 471, 576, 593, 626, 829
SseBI AGGCCT 2 cut(s) 85, 701
SsiI CCGC 5 cut(s) 505, 738, 858, 866, 939
SspI AATATT 1 cut(s) 547
SspMI CTAG 2 cut(s) 129, 494
SstI GAGCTC 1 cut(s) 655
StuI AGGCCT 2 cut(s) 85, 701
StyD4I CCNGG 1 cut(s) 992
StyI CCWWGG 2 cut(s) 235, 306
TaaI ACNGT 3 cut(s) 91, 722, 936
TaiI ACGT 5 cut(s) 176, 279, 454, 518, 648
TaqI TCGA 4 cut(s) 5, 649, 833, 1010
TasI AATT 7 cut(s) 167, 255, 471, 576, 593, 626, 829
TauI GCSGC 1 cut(s) 869
Tru1I TTAA 6 cut(s) 267, 273, 383, 524, 543, 629
Tru9I TTAA 6 cut(s) 267, 273, 383, 524, 543, 629
TspDTI ATGAA 1 cut(s) 354
Tth111I GACNNNGTC 1 cut(s) 420
Van91I CCANNNNNTGG 2 cut(s) 203, 476
VpaK11BI GGWCC 2 cut(s) 241, 936
XagI CCTNNNNNAGG 1 cut(s) 1053
XapI RAATTY 3 cut(s) 167, 255, 576
XbaI TCTAGA 1 cut(s) 493
XceI RCATGY 3 cut(s) 104, 335, 884
XmiI GTMKAC 1 cut(s) 5
XmnI GAANNNNTTC 1 cut(s) 297
XspI CTAG 2 cut(s) 129, 494
Zsp2I ATGCAT 1 cut(s) 337
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.