Rmu_sc0009850.1_g000006

Belongs to the tRNA nucleotidyltransferase poly(A) polymerase family

Basic Information

Type: gene
Biological Identity
rosa_multiflora
Rmu_sc0009850.1
Physical Location & Seq
Forward (+)
36830 .. 42711
5882 bp
Loading structure...
UTR
Exon/CDS
Intron
Rmu_sc0009850.1_g000006.1.cds

Sequence Viewer

Length: 2496 bp
atgagttattatgagccgcatttacctggctctgttgcaataaatgattgcaatgaccaatatggccaagatcaattgtatggttatgatggcagatatagctatggcacatatcaaagttttgttgattttaatagccatgcatcttgggatcaacaaaatcccacaatactacctcattatggctttgatcatcgacatggtaaccaggatggttatgggtcggccaacgagctgtatgataattgtggccaaacagttaatgcaccatacaatagttatgattcaaactataatcataacaaccaagacggctacaaccaaataggaccctacaacaatgttgatggcttgagttgccagcttgtatgggaaactcgactagccgcgctacagcccctgtacgatcaacaagttggtcacaatgaaatggtcgaagaaaatgtaagctcttggggaggtggtgtaaaatcatttgaaaaagccataaatgtgaacaagaagatcattcaaaaagggatggtagaaatagccacacaattttctattttcatagaagagatgaagtcacacctgaataatattttcagagaagagatgaagtcacacctgaataagatgaagatgctgagacataaaaaaatactgacggaggcataccactgtaaccgcgaccatgacttcaaaaaagaggaatccattgatgatcagatggaaactcggccgcctgttgttcttccttcaaatttggaggcaaacatgtcaggccaaaatttgcaaaatgtcaaggagaatgaccatcacatggttgagtgtaaaattaacgagactattcgtatggatatggttctcgaaaagaaagttgacctcaacaattcgcagcttgatgaagatcttaatcttctagccaaagaatgtcggctcgctgagcgtaatgtggtcaatagtgatgatcatccaattcaagatgtcatgcatgttgacatgattattggaaacaaagctgacttggagaaaccactatcagagaaagtggaaacaagtacatttgaagagcatataatttcggcccacatgaaggccgaaaagaaaacaaatctcaatcattccctttggtcaattaagatcggccttgaaaaatttgaaattcatgctgagaatacaaaatgttcaaaacttgggtcccagtctccccaggagccgactgcgagcgcaaccgccactgttacttccagcgaagcaaggaagaagtcaggtcacgggactaccccaacgactgcaccccgcggtgctggcacgcctgcgcaaccactcgcccaaaagagactgtttgcacaccagctggatgagcgtcataagacaattttgaacgctatagaggatcaaaacaagcatacctcatcggagttcgtgacctcgcgcaaggaaggtcccagcttgactactcaagtcggtttacagcaaggcgaattggaaagccaaaaatcttcacacggagaggttgtttctgaggttgaattgcctacagatggcaataaacctaaatgcctcattgatgagtcacggccttacatagaggctttgcatggagaagatggtcaacaagattgttattctgacaatataattgtttcagaacaaatatatgatttctccactgatcaagccaaatacgtggctgttaatcagatgcatggggggcatgatattgtccaggttcatccccttaataaccaaaagcagctgtatgatcaatttaattatggttatgctgctggacgtcatcatgaccaaggtaatcaaagccacaatcaacttaattatgaattaaggtgttatatggctgctggacgtcctcatcatgcagaaggtcaagagtgtggtccccttaattatcaattaaggcatgggccacttgattatcaattatgtttgggtcttgagaagccaatctgtggctttattaatcaattcagtttgaagatcttcatatatgtttcaaggccagtcggtggctttgaaatttgtaaagaaggatttggtgaccccaaggccagtcttgacacagagccaatctatgatgaatatgatgataattataatttaattattagccatatgcaggagtttaagtcctttgaagctcttggtctggagaatttagaccaacgagtggtcaattacaaaagccaacctgcagtggcttattctgaagacaccatgttctatgacatggtagttggcgacaaagccggtcttgggacaacgtcatctccaaaattgcaattgaagatcatgcttcgtcaaccaacaaagatacttggggggcaatactactccttctacgagccaaatttcttccaagtttccgacgcgaagtatctttgttattttcttccaagctcctgggagagggattttcatgccataaattttgatgcatcggagcttggagtgaagcatagatggcctcctccgtggctttctagaggttag

Protein Analysis

831

Amino Acids

94.46

Weight (kDa)

5.42

Isoelectric Point (pI)

45.91

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready

Orthologous Genes (Group: OG0000314)

Species Orthologous Gene IDs
fragaria_vesca FvH4_1g02272 FvH4_1g22661 FvH4_2g10242 FvH4_2g34051 FvH4_3g19221 FvH4_3g29651 FvH4_3g30891 FvH4_4g11061 FvH4_5g09250 FvH4_5g15302 FvH4_5g15303 FvH4_5g15304 FvH4_5g28521 FvH4_6g23591 FvH4_7g05710 FvH4_7g19520
pyrus_communis pycom07g06330
rosa_chinensis RchiOBHm_Chr5g0027301 RchiOBHm_Chr6g0251451 RchiOBHm_Chr6g0274861
rosa_laevigata RLG00000007850
rosa_multiflora Rmu_co8230721.1_g000001 Rmu_sc0000271.1_g000027 Rmu_sc0000303.1_g000024 Rmu_sc0000368.1_g000024 Rmu_sc0000621.1_g000037 Rmu_sc0000693.1_g000081 Rmu_sc0001229.1_g000006 Rmu_sc0001373.1_g000003 Rmu_sc0001459.1_g000001 Rmu_sc0001744.1_g000002 Rmu_sc0001909.1_g000002 Rmu_sc0002053.1_g000012 Rmu_sc0002060.1_g000015 Rmu_sc0002119.1_g000036 Rmu_sc0002177.1_g000007 Rmu_sc0002822.1_g000024 Rmu_sc0002965.1_g000015 Rmu_sc0003363.1_g000051 Rmu_sc0003500.1_g000013 Rmu_sc0004191.1_g000020 Rmu_sc0004904.1_g000032 Rmu_sc0005325.1_g000008 Rmu_sc0005947.1_g000040 Rmu_sc0006475.1_g000001 Rmu_sc0006522.1_g000019 Rmu_sc0007102.1_g000005 Rmu_sc0007810.1_g000003 Rmu_sc0008339.1_g000025 Rmu_sc0008698.1_g000004 Rmu_sc0009313.1_g000006 Rmu_sc0009850.1_g000006 Rmu_sc0010598.1_g000003 Rmu_sc0011162.1_g000002 Rmu_sc0011824.1_g000004 Rmu_sc0011900.1_g000010 Rmu_sc0012291.1_g000006 Rmu_sc0012619.1_g000003 Rmu_sc0014679.1_g000001 Rmu_sc0019053.1_g000001 Rmu_sc0021462.1_g000003 Rmu_sc0024172.1_g000001 Rmu_sc0024173.1_g000001 Rmu_ssc0000052.1_g000016 Rmu_ssc0000392.1_g000010 Rmu_ssc0000421.1_g000062 Rmu_ssc0000479.1_g000006
rosa_roxburghii Rroxscaffold_153G00436600 Rroxscaffold_1G00008580 Rroxscaffold_1G00016770 Rroxscaffold_1G00029550 Rroxscaffold_1G00036450 Rroxscaffold_1G00040410 Rroxscaffold_1G00047110 Rroxscaffold_1G00060570 Rroxscaffold_2G00081500 Rroxscaffold_2G00081510 Rroxscaffold_2G00086080 Rroxscaffold_2G00099620 Rroxscaffold_2G00099630 Rroxscaffold_2G00099640 Rroxscaffold_2G00109170 Rroxscaffold_2G00127750 Rroxscaffold_2G00128590 Rroxscaffold_2G00130780 Rroxscaffold_2G00131040 Rroxscaffold_2G00143160 Rroxscaffold_3G00229280 Rroxscaffold_3G00229290 Rroxscaffold_3G00229970 Rroxscaffold_3G00242860 Rroxscaffold_3G00242890 Rroxscaffold_3G00242900 Rroxscaffold_3G00248200 Rroxscaffold_4G00284550 Rroxscaffold_4G00288780 Rroxscaffold_4G00298620 Rroxscaffold_4G00298630 Rroxscaffold_4G00312420 Rroxscaffold_4G00320310 Rroxscaffold_4G00322220 Rroxscaffold_4G00323600 Rroxscaffold_4G00331830 Rroxscaffold_4G00332010 Rroxscaffold_4G00332020 Rroxscaffold_5G00344470 Rroxscaffold_5G00345310 Rroxscaffold_5G00356120 Rroxscaffold_5G00368700 Rroxscaffold_5G00379820 Rroxscaffold_5G00382480 Rroxscaffold_6G00395080 Rroxscaffold_6G00405520 Rroxscaffold_6G00428210 Rroxscaffold_7G00193460
rosa_samantha Rh7CG413200 Rh7DG284900

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 1 cut(s) 2100
AatII GACGTC 2 cut(s) 1783, 1855
Acc16I TGCGCA 1 cut(s) 1305
Acc36I ACCTGC 1 cut(s) 2203
AccB7I CCANNNNNTGG 4 cut(s) 805, 1955, 2012, 2173
AccII CGCG 5 cut(s) 389, 672, 1287, 1420, 2375
AciI CCGC 7 cut(s) 17, 387, 670, 725, 1218, 1285, 1287
AclWI GGATC 2 cut(s) 159, 1389
AcoI YGGCCR 4 cut(s) 64, 225, 250, 722
AcsI RAATTY 8 cut(s) 745, 772, 1139, 1146, 2022, 2158, 2353, 2431
AcuI CTGAAG 1 cut(s) 2232
AcyI GRCGYC 2 cut(s) 1780, 1852
AfaI GTAC 2 cut(s) 404, 1045
AflIII ACRYGT 1 cut(s) 759
AjnI CCWGG 5 cut(s) 25, 207, 1194, 1713, 2405
Alw26I GTCTC 4 cut(s) 625, 821, 1194, 1318
AlwI GGATC 2 cut(s) 159, 1389
AlwNI CAGNNNCTG 1 cut(s) 400
ApeKI GCWGC 4 cut(s) 880, 1741, 1772, 1844
ApoI RAATTY 8 cut(s) 745, 772, 1139, 1146, 2022, 2158, 2353, 2431
ArsI GACNNNNNNTTYG 2 cut(s) 1166, 1198
AseI ATTAAT 1 cut(s) 1965
Asp700I GAANNNNTTC 1 cut(s) 1985
AspLEI GCGC 4 cut(s) 391, 1214, 1306, 1422
AspS9I GGNCC 6 cut(s) 329, 1069, 1182, 1430, 1883, 1910
AsuHPI GGTGA 1 cut(s) 2054
AvaII GGWCC 4 cut(s) 329, 1182, 1430, 1883
BalI TGGCCA 2 cut(s) 66, 252
BbsI GAAGAC 1 cut(s) 2220
BbvI GCAGC 4 cut(s) 892, 1753, 1759, 1831
BccI CCATC 9 cut(s) 83, 206, 341, 514, 706, 807, 1523, 1589, 2460
BceAI ACGGC 2 cut(s) 328, 1580
BciT130I CCWGG 5 cut(s) 27, 209, 1196, 1715, 2407
BclI TGATCA 5 cut(s) 190, 706, 952, 1660, 1750
BcoDI GTCTC 4 cut(s) 625, 821, 1194, 1318
BfaI CTAG 3 cut(s) 383, 905, 2487
BfmI CTRYAG 4 cut(s) 392, 1374, 1524, 2196
BfuAI ACCTGC 1 cut(s) 2203
BglII AGATCT 2 cut(s) 892, 1983
BisI GCNGC 7 cut(s) 17, 387, 725, 881, 1742, 1773, 1845
BlpI GCTNAGC 1 cut(s) 927
BlsI GCNGC 7 cut(s) 18, 388, 726, 882, 1743, 1774, 1846
Bme1390I CCNGG 5 cut(s) 27, 209, 1196, 1715, 2407
Bme18I GGWCC 4 cut(s) 329, 1182, 1430, 1883
BmgT120I GGNCC 6 cut(s) 329, 1069, 1182, 1430, 1883, 1910
BmiI GGNNCC 6 cut(s) 331, 1183, 1184, 1200, 1432, 1885
BmrFI CCNGG 5 cut(s) 27, 209, 1196, 1715, 2407
BmrI ACTGGG 1 cut(s) 1180
BmsI GCATC 5 cut(s) 152, 615, 1680, 2428, 2450
BmuI ACTGGG 1 cut(s) 1180
BpiI GAAGAC 1 cut(s) 2220
BpmI CTGGAG 1 cut(s) 2174
Bpu1102I GCTNAGC 1 cut(s) 927
BpuEI CTTGAG 3 cut(s) 373, 1431, 1961
BsaAI YACGTR 1 cut(s) 1675
BsaBI GATNNNNATC 3 cut(s) 891, 897, 954
BsaHI GRCGYC 2 cut(s) 1780, 1852
BsaJI CCNNGG 6 cut(s) 1194, 1285, 1792, 2049, 2406, 2477
BsaXI ACNNNNNCTCC 8 cut(s) 450, 480, 1488, 1518, 2117, 2147, 2257, 2287
Bse118I RCCGGY 1 cut(s) 2252
Bse1I ACTGG 3 cut(s) 1186, 2006, 2055
Bse3DI GCAATG 1 cut(s) 58
Bse8I GATNNNNATC 3 cut(s) 891, 897, 954
BseBI CCWGG 5 cut(s) 27, 209, 1196, 1715, 2407
BseDI CCNNGG 6 cut(s) 1194, 1285, 1792, 2049, 2406, 2477
BseGI GGATG 5 cut(s) 217, 525, 955, 1351, 1720
BseJI GATNNNNATC 3 cut(s) 891, 897, 954
BseMI GCAATG 1 cut(s) 58
BseMII CTCAG 4 cut(s) 620, 918, 1146, 1500
BseNI ACTGG 3 cut(s) 1186, 2006, 2055
BseRI GAGGAG 1 cut(s) 2463
BseX3I CGGCCG 1 cut(s) 722
BseXI GCAGC 4 cut(s) 892, 1753, 1759, 1831
BseYI CCCAGC 1 cut(s) 1433
BsgI GTGCAG 1 cut(s) 1263
Bsh1236I CGCG 5 cut(s) 389, 672, 1287, 1420, 2375
Bsh1285I CGRYCG 1 cut(s) 725
BsiEI CGRYCG 1 cut(s) 725
BsiSI CCGG 1 cut(s) 2253
BslFI GGGAC 5 cut(s) 1168, 1276, 1416, 1869, 2275
BsmAI GTCTC 4 cut(s) 625, 821, 1194, 1318
BsmFI GGGAC 5 cut(s) 1168, 1276, 1416, 1869, 2275
Bsp1720I GCTNAGC 1 cut(s) 927
BspACI CCGC 7 cut(s) 17, 387, 670, 725, 1218, 1285, 1287
BspCNI CTCAG 4 cut(s) 621, 919, 1147, 1501
BspFNI CGCG 5 cut(s) 389, 672, 1287, 1420, 2375
BspHI TCATGA 1 cut(s) 1786
BspLI GGNNCC 6 cut(s) 331, 1183, 1184, 1200, 1432, 1885
BspMAI CTGCAG 1 cut(s) 2200
BspMI ACCTGC 1 cut(s) 2203
BspPI GGATC 2 cut(s) 159, 1389
BspQI GCTCTTC 1 cut(s) 1047
BsrDI GCAATG 1 cut(s) 58
BsrFI RCCGGY 1 cut(s) 2252
BsrI ACTGG 3 cut(s) 1186, 2006, 2055
BssAI RCCGGY 1 cut(s) 2252
BssECI CCNNGG 6 cut(s) 1194, 1285, 1792, 2049, 2406, 2477
BssNI GRCGYC 2 cut(s) 1780, 1852
BssT1I CCWWGG 2 cut(s) 1792, 2049
Bst2UI CCWGG 5 cut(s) 27, 209, 1196, 1715, 2407
Bst4CI ACNGT 4 cut(s) 259, 665, 1225, 1329
Bst6I CTCTTC 3 cut(s) 552, 588, 1047
BstACI GRCGYC 2 cut(s) 1780, 1852
BstBAI YACGTR 1 cut(s) 1675
BstC8I GCNNGC 6 cut(s) 362, 924, 1210, 1294, 1298, 1302
BstDEI CTNAG 4 cut(s) 629, 927, 1155, 1509
BstDSI CCRYGG 2 cut(s) 1285, 2477
BstEII GGTNACC 2 cut(s) 203, 2042
BstENI CCTNNNNNAGG 1 cut(s) 2410
BstF5I GGATG 5 cut(s) 217, 525, 955, 1351, 1720
BstFNI CGCG 5 cut(s) 389, 672, 1287, 1420, 2375
BstHHI GCGC 4 cut(s) 391, 1214, 1306, 1422
BstMAI GTCTC 4 cut(s) 625, 821, 1194, 1318
BstMCI CGRYCG 1 cut(s) 725
BstMWI GCNNNNNNNGC 7 cut(s) 99, 357, 928, 1293, 1348, 1699, 2467
BstNI CCWGG 5 cut(s) 27, 209, 1196, 1715, 2407
BstNSI RCATGY 2 cut(s) 763, 980
BstPI GGTNACC 2 cut(s) 203, 2042
BstSCI CCNGG 5 cut(s) 25, 207, 1194, 1713, 2405
BstSFI CTRYAG 4 cut(s) 392, 1374, 1524, 2196
BstUI CGCG 5 cut(s) 389, 672, 1287, 1420, 2375
BstV1I GCAGC 4 cut(s) 892, 1753, 1759, 1831
BstV2I GAAGAC 1 cut(s) 2220
BstX2I RGATCY 2 cut(s) 892, 1983
BstXI CCANNNNNNTGG 2 cut(s) 1675, 2406
BstYI RGATCY 2 cut(s) 892, 1983
BstZI CGGCCG 1 cut(s) 722
BtgI CCRYGG 2 cut(s) 1285, 2477
BtsCI GGATG 5 cut(s) 217, 525, 955, 1351, 1720
BtsI GCAGTG 1 cut(s) 2205
BtsIMutI CAGTG 4 cut(s) 661, 1221, 1656, 2205
BveI ACCTGC 1 cut(s) 2203
Cac8I GCNNGC 6 cut(s) 362, 924, 1210, 1294, 1298, 1302
CaiI CAGNNNCTG 1 cut(s) 400
CciI TCATGA 1 cut(s) 1786
CfoI GCGC 4 cut(s) 391, 1214, 1306, 1422
Cfr10I RCCGGY 1 cut(s) 2252
Cfr13I GGNCC 6 cut(s) 329, 1069, 1182, 1430, 1883, 1910
Cfr42I CCGCGG 1 cut(s) 1288
CseI GACGC 2 cut(s) 1340, 2381
Csp6I GTAC 2 cut(s) 403, 1044
CviQI GTAC 2 cut(s) 403, 1044
DdeI CTNAG 4 cut(s) 629, 927, 1155, 1509
EaeI YGGCCR 4 cut(s) 64, 225, 250, 722
EagI CGGCCG 1 cut(s) 722
Eam1104I CTCTTC 3 cut(s) 552, 588, 1047
EarI CTCTTC 3 cut(s) 552, 588, 1047
EclXI CGGCCG 1 cut(s) 722
Eco130I CCWWGG 2 cut(s) 1792, 2049
Eco47I GGWCC 4 cut(s) 329, 1182, 1430, 1883
Eco52I CGGCCG 1 cut(s) 722
Eco57I CTGAAG 1 cut(s) 2232
Eco91I GGTNACC 2 cut(s) 203, 2042
EcoNI CCTNNNNNAGG 1 cut(s) 2410
EcoO109I RGGNCCY 3 cut(s) 329, 1182, 1430
EcoO65I GGTNACC 2 cut(s) 203, 2042
EcoRII CCWGG 5 cut(s) 25, 207, 1194, 1713, 2405
EcoT14I CCWWGG 2 cut(s) 1792, 2049
EcoT22I ATGCAT 4 cut(s) 145, 978, 1695, 2443
ErhI CCWWGG 2 cut(s) 1792, 2049
FalI AAGNNNNNCTT 2 cut(s) 2241, 2273
FaqI GGGAC 5 cut(s) 1168, 1276, 1416, 1869, 2275
FauI CCCGC 1 cut(s) 1292
FauNDI CATATG 1 cut(s) 2118
FbaI TGATCA 5 cut(s) 190, 706, 952, 1660, 1750
Fnu4HI GCNGC 7 cut(s) 17, 387, 725, 881, 1742, 1773, 1845
FokI GGATG 5 cut(s) 224, 532, 942, 1358, 1707
Fsp4HI GCNGC 7 cut(s) 17, 387, 725, 881, 1742, 1773, 1845
FspBI CTAG 3 cut(s) 383, 905, 2487
FspI TGCGCA 1 cut(s) 1305
GlaI GCGC 4 cut(s) 390, 1213, 1305, 1421
GluI GCNGC 7 cut(s) 17, 387, 725, 881, 1742, 1773, 1845
GsaI CCCAGC 1 cut(s) 1437
GsuI CTGGAG 1 cut(s) 2174
HapII CCGG 1 cut(s) 2253
HgaI GACGC 2 cut(s) 1340, 2381
HhaI GCGC 4 cut(s) 391, 1214, 1306, 1422
Hin1I GRCGYC 2 cut(s) 1780, 1852
Hin6I GCGC 4 cut(s) 389, 1212, 1304, 1420
HinP1I GCGC 4 cut(s) 389, 1212, 1304, 1420
HincII GTYRAC 4 cut(s) 865, 982, 1601, 2306
HindII GTYRAC 4 cut(s) 865, 982, 1601, 2306
HinfI GANTC 3 cut(s) 284, 695, 1559
HpaII CCGG 1 cut(s) 2253
HphI GGTGA 1 cut(s) 2054
Hpy166II GTNNAC 6 cut(s) 496, 865, 982, 1457, 1601, 2306
Hpy188III TCNNGA 9 cut(s) 851, 965, 1411, 1787, 1874, 1940, 2060, 2153, 2487
Hpy8I GTNNAC 6 cut(s) 496, 865, 982, 1457, 1601, 2306
Hpy99I CGWCG 1 cut(s) 2375
HpyAV CCTTC 6 cut(s) 750, 1072, 1421, 1862, 2027, 2350
HpyCH4III ACNGT 4 cut(s) 259, 665, 1225, 1329
HpyCH4IV ACGT 4 cut(s) 1674, 1780, 1852, 2267
HpyF10VI GCNNNNNNNGC 7 cut(s) 99, 357, 928, 1293, 1348, 1699, 2467
HpyF3I CTNAG 4 cut(s) 629, 927, 1155, 1509
HpySE526I ACGT 4 cut(s) 1674, 1780, 1852, 2267
Hsp92I GRCGYC 2 cut(s) 1780, 1852
HspAI GCGC 4 cut(s) 389, 1212, 1304, 1420
KflI GGGWCCC 1 cut(s) 1182
Ksp22I TGATCA 5 cut(s) 190, 706, 952, 1660, 1750
KspI CCGCGG 1 cut(s) 1288
LguI GCTCTTC 1 cut(s) 1047
LmnI GCTCC 3 cut(s) 1198, 2408, 2446
Lsp1109I GCAGC 4 cut(s) 892, 1753, 1759, 1831
LweI GCATC 5 cut(s) 152, 615, 1680, 2428, 2450
MaeI CTAG 3 cut(s) 383, 905, 2487
MaeII ACGT 4 cut(s) 1674, 1780, 1852, 2267
MfeI CAATTG 2 cut(s) 74, 2285
MflI RGATCY 2 cut(s) 892, 1983
MlsI TGGCCA 2 cut(s) 66, 252
MluNI TGGCCA 2 cut(s) 66, 252
MlyI GAGTC 1 cut(s) 1568
MmeI TCCRAC 1 cut(s) 2394
Mox20I TGGCCA 2 cut(s) 66, 252
Mph1103I ATGCAT 4 cut(s) 145, 978, 1695, 2443
MroXI GAANNNNTTC 1 cut(s) 1985
MscI TGGCCA 2 cut(s) 66, 252
MslI CAYNNNNRTG 2 cut(s) 198, 491
Msp20I TGGCCA 2 cut(s) 66, 252
MspA1I CMGCKG 3 cut(s) 1287, 1342, 1744
MspI CCGG 1 cut(s) 2253
MspR9I CCNGG 5 cut(s) 27, 209, 1196, 1715, 2407
MunI CAATTG 2 cut(s) 74, 2285
MvaI CCWGG 5 cut(s) 27, 209, 1196, 1715, 2407
MvnI CGCG 5 cut(s) 389, 672, 1287, 1420, 2375
MwoI GCNNNNNNNGC 7 cut(s) 99, 357, 928, 1293, 1348, 1699, 2467
NdeI CATATG 1 cut(s) 2118
NlaIV GGNNCC 6 cut(s) 331, 1183, 1184, 1200, 1432, 1885
NmeAIII GCCGAG 1 cut(s) 700
NmuCI GTSAC 7 cut(s) 419, 567, 603, 1256, 1411, 1560, 2042
NsbI TGCGCA 1 cut(s) 1305
NsiI ATGCAT 4 cut(s) 145, 978, 1695, 2443
NspI RCATGY 2 cut(s) 763, 980
PagI TCATGA 1 cut(s) 1786
PciI ACATGT 1 cut(s) 759
PciSI GCTCTTC 1 cut(s) 1047
PdmI GAANNNNTTC 1 cut(s) 1985
PfeI GAWTC 2 cut(s) 284, 695
PflFI GACNNNGTC 1 cut(s) 2266
PflMI CCANNNNNTGG 4 cut(s) 805, 1955, 2012, 2173
PkrI GCNGC 7 cut(s) 18, 388, 726, 882, 1743, 1774, 1846
PleI GAGTC 1 cut(s) 1567
PpsI GAGTC 1 cut(s) 1567
Ppu21I YACGTR 1 cut(s) 1675
PpuMI RGGWCCY 3 cut(s) 329, 1182, 1430
PscI ACATGT 1 cut(s) 759
PshBI ATTAAT 1 cut(s) 1965
PsiI TTATAA 1 cut(s) 2100
Psp5II RGGWCCY 3 cut(s) 329, 1182, 1430
Psp6I CCWGG 5 cut(s) 25, 207, 1194, 1713, 2405
PspEI GGTNACC 2 cut(s) 203, 2042
PspFI CCCAGC 1 cut(s) 1433
PspGI CCWGG 5 cut(s) 25, 207, 1194, 1713, 2405
PspN4I GGNNCC 6 cut(s) 331, 1183, 1184, 1200, 1432, 1885
PspPI GGNCC 6 cut(s) 329, 1069, 1182, 1430, 1883, 1910
PspPPI RGGWCCY 3 cut(s) 329, 1182, 1430
PstI CTGCAG 1 cut(s) 2200
PstNI CAGNNNCTG 1 cut(s) 400
PsuI RGATCY 2 cut(s) 892, 1983
PsyI GACNNNGTC 1 cut(s) 2266
PvuII CAGCTG 2 cut(s) 1342, 1744
RsaI GTAC 2 cut(s) 404, 1045
RsaNI GTAC 2 cut(s) 403, 1044
RseI CAYNNNNRTG 2 cut(s) 198, 491
SacII CCGCGG 1 cut(s) 1288
SapI GCTCTTC 1 cut(s) 1047
SatI GCNGC 7 cut(s) 17, 387, 725, 881, 1742, 1773, 1845
Sau96I GGNCC 6 cut(s) 329, 1069, 1182, 1430, 1883, 1910
SchI GAGTC 1 cut(s) 1568
ScrFI CCNGG 5 cut(s) 27, 209, 1196, 1715, 2407
SfaNI GCATC 5 cut(s) 152, 615, 1680, 2428, 2450
SfcI CTRYAG 4 cut(s) 392, 1374, 1524, 2196
Sfr303I CCGCGG 1 cut(s) 1288
SgrBI CCGCGG 1 cut(s) 1288
SinI GGWCC 4 cut(s) 329, 1182, 1430, 1883
SmiMI CAYNNNNRTG 2 cut(s) 198, 491
SmlI CTYRAG 3 cut(s) 352, 1446, 1940
SmoI CTYRAG 3 cut(s) 352, 1446, 1940
SsiI CCGC 7 cut(s) 17, 387, 670, 725, 1218, 1285, 1287
SspI AATATT 1 cut(s) 583
SspMI CTAG 3 cut(s) 383, 905, 2487
StyD4I CCNGG 5 cut(s) 25, 207, 1194, 1713, 2405
StyI CCWWGG 2 cut(s) 1792, 2049
TaaI ACNGT 4 cut(s) 259, 665, 1225, 1329
TaiI ACGT 4 cut(s) 1677, 1783, 1855, 2270
TaqI TCGA 4 cut(s) 196, 379, 435, 852
TatI WGTACW 1 cut(s) 1043
TauI GCSGC 3 cut(s) 19, 389, 727
TfiI GAWTC 2 cut(s) 284, 695
TscAI CASTG 4 cut(s) 668, 1228, 1663, 2205
TseFI GTSAC 7 cut(s) 419, 567, 603, 1256, 1411, 1560, 2042
TseI GCWGC 4 cut(s) 880, 1741, 1772, 1844
Tsp45I GTSAC 7 cut(s) 419, 567, 603, 1256, 1411, 1560, 2042
TspGWI ACGGA 3 cut(s) 665, 1509, 2466
TspRI CASTG 4 cut(s) 668, 1228, 1663, 2205
Tth111I GACNNNGTC 1 cut(s) 2266
Van91I CCANNNNNTGG 4 cut(s) 805, 1955, 2012, 2173
VpaK11BI GGWCC 4 cut(s) 329, 1182, 1430, 1883
VspI ATTAAT 1 cut(s) 1965
XagI CCTNNNNNAGG 1 cut(s) 2410
XapI RAATTY 8 cut(s) 745, 772, 1139, 1146, 2022, 2158, 2353, 2431
XbaI TCTAGA 1 cut(s) 2486
XceI RCATGY 2 cut(s) 763, 980
XcmI CCANNNNNNNNNTGG 1 cut(s) 215
XmnI GAANNNNTTC 1 cut(s) 1985
XspI CTAG 3 cut(s) 383, 905, 2487
ZraI GACGTC 2 cut(s) 1781, 1853
Zsp2I ATGCAT 4 cut(s) 145, 978, 1695, 2443
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.