Rroxscaffold_2G00081500

Belongs to the tRNA nucleotidyltransferase poly(A) polymerase family

Basic Information

Type: gene
Biological Identity
rosa_roxburghii
GWHEROQ00000002
Physical Location & Seq
Reverse (-)
4549709 .. 4550667
959 bp
Loading structure...
UTR
Exon/CDS
Intron
Rroxscaffold_2G00081500.1

Sequence Viewer

Length: 729 bp
ATGCCTATTTTTGAAGAGGAGATCAATTCATCAAATTTTGGTGCCTCTAAATATGATCTCAACACGGAGCCAATATATGACGAGTATGATGAGAATTATAACCTAATTATTGGTTCCAAAAATCATATGCAGGAGTACAATTCTTTTGAAGCTCTTGATATGGAGAATTTTGACCAACAAGTGGTCAAATACAACAGCCAATCTGTGGCTTCTTTTGAAGACACCATGTTCTATGACATGGTAGTTGGCGACAAAGCCAATCTTGGGACACAATCATCTCCAAAATTGCAATTGAAGATCATGCTTCGTAAACCAACAAAGATACTTGGGGGCAATATTACTCCTTCTACGAGCCAAATTTCTTCCAAGTTTTCGACGCGAAGTATCTTTGTTGCTTTCCCGCAAACTCTCACAAGAGAGTGGCTTGAACTTTCTGATATACTTAGAGGCCATCAGTTTTGGCCTGAACACATATACATGAGGCATATTATATGCCTAATATGGTATCAACAATATTTTTTGCCAGTAGTTGTGGCGAAAATGGAGGGCTATGAATTGTTTCTTAAAGCCAGCGAAGTGGCGTTTAATTACATGGCCTCTCGAAGGAATGGGCGTCACAGTTATTGGAATGGGTCGCGAAAGACGACTGATGATAAATATGCTCGCTGGTCATATACATATGAAAGAGGGAGAGCACATGGCCATACGTGTCCCTCTACCTTGGCATAA

Protein Analysis

242

Amino Acids

28.27

Weight (kDa)

6.17

Isoelectric Point (pI)

57.24

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready

Orthologous Genes (Group: OG0000314)

Species Orthologous Gene IDs
fragaria_vesca FvH4_1g02272 FvH4_1g22661 FvH4_2g10242 FvH4_2g34051 FvH4_3g19221 FvH4_3g29651 FvH4_3g30891 FvH4_4g11061 FvH4_5g09250 FvH4_5g15302 FvH4_5g15303 FvH4_5g15304 FvH4_5g28521 FvH4_6g23591 FvH4_7g05710 FvH4_7g19520
pyrus_communis pycom07g06330
rosa_chinensis RchiOBHm_Chr5g0027301 RchiOBHm_Chr6g0251451 RchiOBHm_Chr6g0274861
rosa_laevigata RLG00000007850
rosa_multiflora Rmu_co8230721.1_g000001 Rmu_sc0000271.1_g000027 Rmu_sc0000303.1_g000024 Rmu_sc0000368.1_g000024 Rmu_sc0000621.1_g000037 Rmu_sc0000693.1_g000081 Rmu_sc0001229.1_g000006 Rmu_sc0001373.1_g000003 Rmu_sc0001459.1_g000001 Rmu_sc0001744.1_g000002 Rmu_sc0001909.1_g000002 Rmu_sc0002053.1_g000012 Rmu_sc0002060.1_g000015 Rmu_sc0002119.1_g000036 Rmu_sc0002177.1_g000007 Rmu_sc0002822.1_g000024 Rmu_sc0002965.1_g000015 Rmu_sc0003363.1_g000051 Rmu_sc0003500.1_g000013 Rmu_sc0004191.1_g000020 Rmu_sc0004904.1_g000032 Rmu_sc0005325.1_g000008 Rmu_sc0005947.1_g000040 Rmu_sc0006475.1_g000001 Rmu_sc0006522.1_g000019 Rmu_sc0007102.1_g000005 Rmu_sc0007810.1_g000003 Rmu_sc0008339.1_g000025 Rmu_sc0008698.1_g000004 Rmu_sc0009313.1_g000006 Rmu_sc0009850.1_g000006 Rmu_sc0010598.1_g000003 Rmu_sc0011162.1_g000002 Rmu_sc0011824.1_g000004 Rmu_sc0011900.1_g000010 Rmu_sc0012291.1_g000006 Rmu_sc0012619.1_g000003 Rmu_sc0014679.1_g000001 Rmu_sc0019053.1_g000001 Rmu_sc0021462.1_g000003 Rmu_sc0024172.1_g000001 Rmu_sc0024173.1_g000001 Rmu_ssc0000052.1_g000016 Rmu_ssc0000392.1_g000010 Rmu_ssc0000421.1_g000062 Rmu_ssc0000479.1_g000006
rosa_roxburghii Rroxscaffold_153G00436600 Rroxscaffold_1G00008580 Rroxscaffold_1G00016770 Rroxscaffold_1G00029550 Rroxscaffold_1G00036450 Rroxscaffold_1G00040410 Rroxscaffold_1G00047110 Rroxscaffold_1G00060570 Rroxscaffold_2G00081500 Rroxscaffold_2G00081510 Rroxscaffold_2G00086080 Rroxscaffold_2G00099620 Rroxscaffold_2G00099630 Rroxscaffold_2G00099640 Rroxscaffold_2G00109170 Rroxscaffold_2G00127750 Rroxscaffold_2G00128590 Rroxscaffold_2G00130780 Rroxscaffold_2G00131040 Rroxscaffold_2G00143160 Rroxscaffold_3G00229280 Rroxscaffold_3G00229290 Rroxscaffold_3G00229970 Rroxscaffold_3G00242860 Rroxscaffold_3G00242890 Rroxscaffold_3G00242900 Rroxscaffold_3G00248200 Rroxscaffold_4G00284550 Rroxscaffold_4G00288780 Rroxscaffold_4G00298620 Rroxscaffold_4G00298630 Rroxscaffold_4G00312420 Rroxscaffold_4G00320310 Rroxscaffold_4G00322220 Rroxscaffold_4G00323600 Rroxscaffold_4G00331830 Rroxscaffold_4G00332010 Rroxscaffold_4G00332020 Rroxscaffold_5G00344470 Rroxscaffold_5G00345310 Rroxscaffold_5G00356120 Rroxscaffold_5G00368700 Rroxscaffold_5G00379820 Rroxscaffold_5G00382480 Rroxscaffold_6G00395080 Rroxscaffold_6G00405520 Rroxscaffold_6G00428210 Rroxscaffold_7G00193460
rosa_samantha Rh7CG413200 Rh7DG284900

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 1 cut(s) 99
AccB1I GGYRCC 1 cut(s) 41
AccB7I CCANNNNNTGG 2 cut(s) 181, 205
AccII CGCG 2 cut(s) 379, 637
AciI CCGC 1 cut(s) 401
AcoI YGGCCR 1 cut(s) 700
AcsI RAATTY 3 cut(s) 34, 166, 357
AcyI GRCGYC 1 cut(s) 613
AfaI GTAC 1 cut(s) 137
AfiI CCNNNNNNNGG 4 cut(s) 181, 205, 264, 603
AflIII ACRYGT 1 cut(s) 707
AgsI TTSAA 5 cut(s) 14, 149, 218, 295, 428
AluBI AGCT 1 cut(s) 152
AluI AGCT 1 cut(s) 152
Alw21I GWGCWC 1 cut(s) 697
AoxI GGCC 4 cut(s) 448, 461, 594, 700
ApoI RAATTY 3 cut(s) 34, 166, 357
Asp700I GAANNNNTTC 1 cut(s) 558
BalI TGGCCA 1 cut(s) 702
BanI GGYRCC 1 cut(s) 41
BbsI GAAGAC 1 cut(s) 225
Bbv12I GWGCWC 1 cut(s) 697
BccI CCATC 1 cut(s) 459
BmiI GGNNCC 3 cut(s) 43, 69, 115
BpiI GAAGAC 1 cut(s) 225
BsaAI YACGTR 1 cut(s) 708
BsaHI GRCGYC 1 cut(s) 613
BsaJI CCNNGG 1 cut(s) 720
Bsc4I CCNNNNNNNGG 4 cut(s) 181, 205, 264, 603
Bse1I ACTGG 1 cut(s) 524
BseDI CCNNGG 1 cut(s) 720
BseLI CCNNNNNNNGG 4 cut(s) 181, 205, 264, 603
BseNI ACTGG 1 cut(s) 524
BseRI GAGGAG 1 cut(s) 32
Bsh1236I CGCG 2 cut(s) 379, 637
BshFI GGCC 4 cut(s) 450, 463, 596, 702
BshNI GGYRCC 1 cut(s) 41
BsiHKAI GWGCWC 1 cut(s) 697
BslFI GGGAC 2 cut(s) 280, 696
BslI CCNNNNNNNGG 4 cut(s) 181, 205, 264, 603
BsmFI GGGAC 2 cut(s) 280, 696
BsnI GGCC 4 cut(s) 450, 463, 596, 702
Bsp1286I GDGCHC 1 cut(s) 697
Bsp143I GATC 3 cut(s) 21, 55, 297
Bsp68I TCGCGA 1 cut(s) 637
BspACI CCGC 1 cut(s) 401
BspANI GGCC 4 cut(s) 450, 463, 596, 702
BspFNI CGCG 2 cut(s) 379, 637
BspLI GGNNCC 3 cut(s) 43, 69, 115
BspT107I GGYRCC 1 cut(s) 41
BsrI ACTGG 1 cut(s) 524
BssECI CCNNGG 1 cut(s) 720
BssMI GATC 3 cut(s) 21, 55, 297
BssNI GRCGYC 1 cut(s) 613
BssT1I CCWWGG 1 cut(s) 720
Bst4CI ACNGT 1 cut(s) 620
Bst6I CTCTTC 1 cut(s) 9
BstACI GRCGYC 1 cut(s) 613
BstBAI YACGTR 1 cut(s) 708
BstC8I GCNNGC 2 cut(s) 571, 664
BstDEI CTNAG 1 cut(s) 443
BstENI CCTNNNNNAGG 1 cut(s) 601
BstFNI CGCG 2 cut(s) 379, 637
BstKTI GATC 3 cut(s) 24, 58, 300
BstMBI GATC 3 cut(s) 21, 55, 297
BstUI CGCG 2 cut(s) 379, 637
BstV2I GAAGAC 1 cut(s) 225
BstXI CCANNNNNNTGG 1 cut(s) 577
BsuRI GGCC 4 cut(s) 450, 463, 596, 702
BtuMI TCGCGA 1 cut(s) 637
Cac8I GCNNGC 2 cut(s) 571, 664
CseI GACGC 2 cut(s) 385, 602
Csp6I GTAC 1 cut(s) 136
CviAII CATG 6 cut(s) 226, 238, 301, 478, 592, 698
CviQI GTAC 1 cut(s) 136
DdeI CTNAG 1 cut(s) 443
DpnI GATC 3 cut(s) 23, 57, 299
DpnII GATC 3 cut(s) 21, 55, 297
EaeI YGGCCR 1 cut(s) 700
Eam1104I CTCTTC 1 cut(s) 9
EarI CTCTTC 1 cut(s) 9
Eco130I CCWWGG 1 cut(s) 720
EcoNI CCTNNNNNAGG 1 cut(s) 601
EcoT14I CCWWGG 1 cut(s) 720
ErhI CCWWGG 1 cut(s) 720
FaeI CATG 6 cut(s) 229, 241, 304, 481, 595, 701
FalI AAGNNNNNCTT 2 cut(s) 246, 278
FaqI GGGAC 2 cut(s) 280, 696
FatI CATG 6 cut(s) 225, 237, 300, 477, 591, 697
FauI CCCGC 1 cut(s) 408
FauNDI CATATG 2 cut(s) 126, 679
HaeIII GGCC 4 cut(s) 450, 463, 596, 702
HgaI GACGC 2 cut(s) 385, 602
Hin1I GRCGYC 1 cut(s) 613
Hin1II CATG 6 cut(s) 229, 241, 304, 481, 595, 701
Hpy166II GTNNAC 1 cut(s) 311
Hpy188I TCNGA 1 cut(s) 436
Hpy188III TCNNGA 3 cut(s) 155, 600, 636
Hpy8I GTNNAC 1 cut(s) 311
Hpy99I CGWCG 1 cut(s) 379
HpyAV CCTTC 2 cut(s) 354, 597
HpyCH4III ACNGT 1 cut(s) 620
HpyCH4IV ACGT 1 cut(s) 707
HpyCH4V TGCA 2 cut(s) 130, 289
HpyF3I CTNAG 1 cut(s) 443
HpySE526I ACGT 1 cut(s) 707
Hsp92I GRCGYC 1 cut(s) 613
Hsp92II CATG 6 cut(s) 229, 241, 304, 481, 595, 701
Kzo9I GATC 3 cut(s) 21, 55, 297
LmnI GCTCC 1 cut(s) 67
LpnPI CCDG 5 cut(s) 116, 477, 537, 583, 652
MaeII ACGT 1 cut(s) 707
MaeIII GTNAC 1 cut(s) 614
MalI GATC 3 cut(s) 23, 57, 299
MboI GATC 3 cut(s) 21, 55, 297
MboII GAAGA 4 cut(s) 26, 230, 307, 354
MfeI CAATTG 1 cut(s) 290
MhlI GDGCHC 1 cut(s) 697
MlsI TGGCCA 1 cut(s) 702
MluNI TGGCCA 1 cut(s) 702
MnlI CCTC 8 cut(s) 10, 55, 440, 474, 538, 607, 680, 724
Mox20I TGGCCA 1 cut(s) 702
MroXI GAANNNNTTC 1 cut(s) 558
MscI TGGCCA 1 cut(s) 702
MseI TTAA 2 cut(s) 564, 585
MslI CAYNNNNRTG 1 cut(s) 476
Msp20I TGGCCA 1 cut(s) 702
MunI CAATTG 1 cut(s) 290
MvnI CGCG 2 cut(s) 379, 637
NdeI CATATG 2 cut(s) 126, 679
NdeII GATC 3 cut(s) 21, 55, 297
NlaIII CATG 6 cut(s) 229, 241, 304, 481, 595, 701
NlaIV GGNNCC 3 cut(s) 43, 69, 115
NmuCI GTSAC 1 cut(s) 614
NruI TCGCGA 1 cut(s) 637
PcsI WCGNNNNNNNCGW 1 cut(s) 641
PdmI GAANNNNTTC 1 cut(s) 558
PflMI CCANNNNNTGG 2 cut(s) 181, 205
Ppu21I YACGTR 1 cut(s) 708
PsiI TTATAA 1 cut(s) 99
PspN4I GGNNCC 3 cut(s) 43, 69, 115
RruI TCGCGA 1 cut(s) 637
RsaI GTAC 1 cut(s) 137
RsaNI GTAC 1 cut(s) 136
RseI CAYNNNNRTG 1 cut(s) 476
SaqAI TTAA 2 cut(s) 564, 585
Sau3AI GATC 3 cut(s) 21, 55, 297
SduI GDGCHC 1 cut(s) 697
SetI ASST 4 cut(s) 105, 154, 710, 722
SmiMI CAYNNNNRTG 1 cut(s) 476
SsiI CCGC 1 cut(s) 401
SspI AATATT 2 cut(s) 337, 515
StyI CCWWGG 1 cut(s) 720
TaaI ACNGT 1 cut(s) 620
TaiI ACGT 1 cut(s) 710
TaqI TCGA 2 cut(s) 374, 601
TatI WGTACW 1 cut(s) 135
Tru1I TTAA 2 cut(s) 564, 585
Tru9I TTAA 2 cut(s) 564, 585
TseFI GTSAC 1 cut(s) 614
Tsp45I GTSAC 1 cut(s) 614
TspDTI ATGAA 3 cut(s) 18, 567, 696
TspGWI ACGGA 1 cut(s) 80
Van91I CCANNNNNTGG 2 cut(s) 181, 205
XagI CCTNNNNNAGG 1 cut(s) 601
XapI RAATTY 3 cut(s) 34, 166, 357
XmnI GAANNNNTTC 1 cut(s) 558
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.