Basic Information

Type: gene

Biological Identity

Species

fragaria_vesca

Chromosome

Fvb5

Orthogroup ID

OG0000314

Physical Location & Seq

Genomic Coordinates Forward (+)

5334800 .. 5336973

Gene Structure 2174 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

FvH4_5g09250.t1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 249 bp

ATGGACACCGGCCAGAGACATGGAGGGCAAACAATTGATGACGCCTCTGCCAATATTTATCCTCTTGCCGATCAGACACAAGTTCATAGCAAAGGAAAGCATGTAGAAGAATTGAATGACCAAGCTACTGGACGAAGGGAGTTTCATGACGATGGTACTTCACATACATCTCGCCGTGCTGCTTACAACCTCTACGGGGGCCCATTCGTCTTTGATGGATGTTCCATAAGAGGAGGAGTATGCGCATAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003676 GO:0003723 GO:0003824 GO:0004652 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005829 GO:0006139 GO:0006276 GO:0006378 GO:0006396 GO:0006397 GO:0006725 GO:0006807 GO:0008150 GO:0008152 GO:0009451 GO:0009987 GO:0010467 GO:0016070 GO:0016071 GO:0016740 GO:0016772 GO:0016779 GO:0031123 GO:0031124 GO:0034641 GO:0043170 GO:0043412 GO:0043631 GO:0044237 GO:0044238 GO:0044424 GO:0044444 GO:0044464 GO:0046483 GO:0070566 GO:0071704 GO:0090304 GO:0097159 GO:1901360 GO:1901363

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

PolyA_pol PolyA_pol_RNAbd

Protein Analysis

83

Amino Acids

8.89

Weight (kDa)

5.86

Isoelectric Point (pI)

33.61

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0000314)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_1g02272 FvH4_1g22661 FvH4_2g10242 FvH4_2g34051 FvH4_3g19221 FvH4_3g29651 FvH4_3g30891 FvH4_4g11061 FvH4_5g09250 FvH4_5g15302 FvH4_5g15303 FvH4_5g15304 FvH4_5g28521 FvH4_6g23591 FvH4_7g05710 FvH4_7g19520
pyrus_communis	pycom07g06330
rosa_chinensis	RchiOBHm_Chr5g0027301 RchiOBHm_Chr6g0251451 RchiOBHm_Chr6g0274861
rosa_laevigata	RLG00000007850
rosa_multiflora	Rmu_co8230721.1_g000001 Rmu_sc0000271.1_g000027 Rmu_sc0000303.1_g000024 Rmu_sc0000368.1_g000024 Rmu_sc0000621.1_g000037 Rmu_sc0000693.1_g000081 Rmu_sc0001229.1_g000006 Rmu_sc0001373.1_g000003 Rmu_sc0001459.1_g000001 Rmu_sc0001744.1_g000002 Rmu_sc0001909.1_g000002 Rmu_sc0002053.1_g000012 Rmu_sc0002060.1_g000015 Rmu_sc0002119.1_g000036 Rmu_sc0002177.1_g000007 Rmu_sc0002822.1_g000024 Rmu_sc0002965.1_g000015 Rmu_sc0003363.1_g000051 Rmu_sc0003500.1_g000013 Rmu_sc0004191.1_g000020 Rmu_sc0004904.1_g000032 Rmu_sc0005325.1_g000008 Rmu_sc0005947.1_g000040 Rmu_sc0006475.1_g000001 Rmu_sc0006522.1_g000019 Rmu_sc0007102.1_g000005 Rmu_sc0007810.1_g000003 Rmu_sc0008339.1_g000025 Rmu_sc0008698.1_g000004 Rmu_sc0009313.1_g000006 Rmu_sc0009850.1_g000006 Rmu_sc0010598.1_g000003 Rmu_sc0011162.1_g000002 Rmu_sc0011824.1_g000004 Rmu_sc0011900.1_g000010 Rmu_sc0012291.1_g000006 Rmu_sc0012619.1_g000003 Rmu_sc0014679.1_g000001 Rmu_sc0019053.1_g000001 Rmu_sc0021462.1_g000003 Rmu_sc0024172.1_g000001 Rmu_sc0024173.1_g000001 Rmu_ssc0000052.1_g000016 Rmu_ssc0000392.1_g000010 Rmu_ssc0000421.1_g000062 Rmu_ssc0000479.1_g000006
rosa_roxburghii	Rroxscaffold_153G00436600 Rroxscaffold_1G00008580 Rroxscaffold_1G00016770 Rroxscaffold_1G00029550 Rroxscaffold_1G00036450 Rroxscaffold_1G00040410 Rroxscaffold_1G00047110 Rroxscaffold_1G00060570 Rroxscaffold_2G00081500 Rroxscaffold_2G00081510 Rroxscaffold_2G00086080 Rroxscaffold_2G00099620 Rroxscaffold_2G00099630 Rroxscaffold_2G00099640 Rroxscaffold_2G00109170 Rroxscaffold_2G00127750 Rroxscaffold_2G00128590 Rroxscaffold_2G00130780 Rroxscaffold_2G00131040 Rroxscaffold_2G00143160 Rroxscaffold_3G00229280 Rroxscaffold_3G00229290 Rroxscaffold_3G00229970 Rroxscaffold_3G00242860 Rroxscaffold_3G00242890 Rroxscaffold_3G00242900 Rroxscaffold_3G00248200 Rroxscaffold_4G00284550 Rroxscaffold_4G00288780 Rroxscaffold_4G00298620 Rroxscaffold_4G00298630 Rroxscaffold_4G00312420 Rroxscaffold_4G00320310 Rroxscaffold_4G00322220 Rroxscaffold_4G00323600 Rroxscaffold_4G00331830 Rroxscaffold_4G00332010 Rroxscaffold_4G00332020 Rroxscaffold_5G00344470 Rroxscaffold_5G00345310 Rroxscaffold_5G00356120 Rroxscaffold_5G00368700 Rroxscaffold_5G00379820 Rroxscaffold_5G00382480 Rroxscaffold_6G00395080 Rroxscaffold_6G00405520 Rroxscaffold_6G00428210 Rroxscaffold_7G00193460
rosa_samantha	Rh7CG413200 Rh7DG284900

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc16I	TGCGCA	1 cut(s)	244
AcoI	YGGCCR	1 cut(s)	10
AcyI	GRCGYC	1 cut(s)	42
AfaI	GTAC	1 cut(s)	157
AfiI	CCNNNNNNNGG	1 cut(s)	196
AgsI	TTSAA	1 cut(s)	115
AluBI	AGCT	1 cut(s)	125
AluI	AGCT	1 cut(s)	125
Alw26I	GTCTC	1 cut(s)	10
AoxI	GGCC	2 cut(s)	10, 199
ApaI	GGGCCC	1 cut(s)	203
ApeKI	GCWGC	1 cut(s)	179
AspLEI	GCGC	1 cut(s)	245
AspS9I	GGNCC	2 cut(s)	199, 200
BaeGI	GKGCMC	1 cut(s)	203
BanII	GRGCYC	1 cut(s)	203
BbvI	GCAGC	1 cut(s)	166
BccI	CCATC	2 cut(s)	146, 209
BceAI	ACGGC	1 cut(s)	159
BcoDI	GTCTC	1 cut(s)	10
BisI	GCNGC	1 cut(s)	180
BlsI	GCNGC	1 cut(s)	181
BmgT120I	GGNCC	2 cut(s)	199, 200
BmiI	GGNNCC	2 cut(s)	200, 201
BsaHI	GRCGYC	1 cut(s)	42
Bsc4I	CCNNNNNNNGG	1 cut(s)	196
Bse118I	RCCGGY	1 cut(s)	8
Bse1I	ACTGG	1 cut(s)	133
BseGI	GGATG	1 cut(s)	224
BseLI	CCNNNNNNNGG	1 cut(s)	196
BseNI	ACTGG	1 cut(s)	133
BseRI	GAGGAG	2 cut(s)	246, 249
BseSI	GKGCMC	1 cut(s)	203
BseXI	GCAGC	1 cut(s)	166
BshFI	GGCC	2 cut(s)	12, 201
BsiSI	CCGG	1 cut(s)	9
BslI	CCNNNNNNNGG	1 cut(s)	196
BsmAI	GTCTC	1 cut(s)	10
BsnI	GGCC	2 cut(s)	12, 201
Bsp120I	GGGCCC	1 cut(s)	199
Bsp1286I	GDGCHC	1 cut(s)	203
Bsp143I	GATC	1 cut(s)	70
BspANI	GGCC	2 cut(s)	12, 201
BspHI	TCATGA	1 cut(s)	145
BspLI	GGNNCC	2 cut(s)	200, 201
BsrFI	RCCGGY	1 cut(s)	8
BsrI	ACTGG	1 cut(s)	133
BssAI	RCCGGY	1 cut(s)	8
BssMI	GATC	1 cut(s)	70
BssNI	GRCGYC	1 cut(s)	42
BstACI	GRCGYC	1 cut(s)	42
BstF5I	GGATG	1 cut(s)	224
BstHHI	GCGC	1 cut(s)	245
BstKTI	GATC	1 cut(s)	73
BstMAI	GTCTC	1 cut(s)	10
BstMBI	GATC	1 cut(s)	70
BstNSI	RCATGY	1 cut(s)	104
BstSLI	GKGCMC	1 cut(s)	203
BstV1I	GCAGC	1 cut(s)	166
BstXI	CCANNNNNNTGG	2 cut(s)	20, 128
BsuRI	GGCC	2 cut(s)	12, 201
BtsCI	GGATG	1 cut(s)	224
CciI	TCATGA	1 cut(s)	145
CfoI	GCGC	1 cut(s)	245
Cfr10I	RCCGGY	1 cut(s)	8
Cfr13I	GGNCC	2 cut(s)	199, 200
CseI	GACGC	1 cut(s)	50
Csp6I	GTAC	1 cut(s)	156
CviAII	CATG	3 cut(s)	20, 101, 146
CviJI	RGCY	3 cut(s)	12, 125, 201
CviKI_1	RGCY	3 cut(s)	12, 125, 201
CviQI	GTAC	1 cut(s)	156
DpnI	GATC	1 cut(s)	72
DpnII	GATC	1 cut(s)	70
EaeI	YGGCCR	1 cut(s)	10
Eco24I	GRGCYC	1 cut(s)	203
EcoO109I	RGGNCCY	1 cut(s)	199
EcoT38I	GRGCYC	1 cut(s)	203
FaeI	CATG	3 cut(s)	23, 104, 149
FaiI	YATR	8 cut(s)	21, 87, 102, 147, 165, 227, 241, 247
FatI	CATG	3 cut(s)	19, 100, 145
Fnu4HI	GCNGC	1 cut(s)	180
FokI	GGATG	1 cut(s)	231
FriOI	GRGCYC	1 cut(s)	203
Fsp4HI	GCNGC	1 cut(s)	180
FspAI	RTGCGCAY	1 cut(s)	244
FspI	TGCGCA	1 cut(s)	244
GlaI	GCGC	1 cut(s)	244
GluI	GCNGC	1 cut(s)	180
HaeIII	GGCC	2 cut(s)	12, 201
HapII	CCGG	1 cut(s)	9
HgaI	GACGC	1 cut(s)	50
HhaI	GCGC	1 cut(s)	245
Hin1I	GRCGYC	1 cut(s)	42
Hin1II	CATG	3 cut(s)	23, 104, 149
Hin6I	GCGC	1 cut(s)	243
HinP1I	GCGC	1 cut(s)	243
HpaII	CCGG	1 cut(s)	9
Hpy188I	TCNGA	1 cut(s)	75
Hpy188III	TCNNGA	1 cut(s)	146
HpyAV	CCTTC	1 cut(s)	129
Hsp92I	GRCGYC	1 cut(s)	42
Hsp92II	CATG	3 cut(s)	23, 104, 149
HspAI	GCGC	1 cut(s)	243
Kzo9I	GATC	1 cut(s)	70
LpnPI	CCDG	3 cut(s)	22, 26, 114
Lsp1109I	GCAGC	1 cut(s)	166
MalI	GATC	1 cut(s)	72
MboI	GATC	1 cut(s)	70
MboII	GAAGA	1 cut(s)	119
MfeI	CAATTG	1 cut(s)	33
MhlI	GDGCHC	1 cut(s)	203
MluCI	AATT	2 cut(s)	33, 110
MnlI	CCTC	6 cut(s)	17, 55, 72, 200, 224, 227
MslI	CAYNNNNRTG	1 cut(s)	150
MspI	CCGG	1 cut(s)	9
MunI	CAATTG	1 cut(s)	33
NdeII	GATC	1 cut(s)	70
NlaIII	CATG	3 cut(s)	23, 104, 149
NlaIV	GGNNCC	2 cut(s)	200, 201
NsbI	TGCGCA	1 cut(s)	244
NspI	RCATGY	1 cut(s)	104
PagI	TCATGA	1 cut(s)	145
PkrI	GCNGC	1 cut(s)	181
PspN4I	GGNNCC	2 cut(s)	200, 201
PspOMI	GGGCCC	1 cut(s)	199
PspPI	GGNCC	2 cut(s)	199, 200
RsaI	GTAC	1 cut(s)	157
RsaNI	GTAC	1 cut(s)	156
RseI	CAYNNNNRTG	1 cut(s)	150
SatI	GCNGC	1 cut(s)	180
Sau3AI	GATC	1 cut(s)	70
Sau96I	GGNCC	2 cut(s)	199, 200
SduI	GDGCHC	1 cut(s)	203
SetI	ASST	2 cut(s)	127, 192
SmiMI	CAYNNNNRTG	1 cut(s)	150
Sse9I	AATT	2 cut(s)	33, 110
SspI	AATATT	1 cut(s)	55
TasI	AATT	2 cut(s)	33, 110
TseI	GCWGC	1 cut(s)	179
TspDTI	ATGAA	2 cut(s)	74, 134
XceI	RCATGY	1 cut(s)	104

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.