FvH4_3g29651

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
fragaria_vesca
Fvb3
OG0000314
Physical Location & Seq
Reverse (-)
22669410 .. 22671705
2296 bp
Loading structure...
UTR
Exon/CDS
Intron
FvH4_3g29651.t1

Sequence Viewer

Length: 936 bp
ATGTCTACCAGCCAATCTAATGGAGAAGATTTGCCTTTAGATGAACCTACGTCCAAAGAAATTACTTTGTCAATCAATGGTGAAGTTACTAAAGAACCAGAGGTCGAGGCCGTTGAGATTATGGATAATCATCCTATCTCAAAGATTGATGGTGTTAATCAAGAATTGGAGTTTGAGGATAGGACAGAGCAGTCCATCTTAGAAGAAGAGATCGGTTCGAACACTGATGGTGAACCACAATTTCACATGAAAGTTGACCAAGGAGCCAATTTTCCTATGCAAAACGTATATGTGGACACAAGTCAAACACATGGGGGGCAAGGTGTAGCTCGCCTTCATTCTTTAGTTAACCATCATAAGCAAGTTCATGATCAACCTCAAGTTGCTGGATATTTTGATGAAGGAATAGGTAAAAGCCTACTCTGTCAATTTTCTTCTGGACGTTCTCTCGAGTATGGCCAAATTAATGGCCAACTTAATTATCAATCATCTTATGTACTTGCAAGGCCAATACGTGGCTTCTTTATCCAATACCATTGGAATTTTTATATGCAACTTCAGAAGCCAAGCGGTGACTTTGGTTTATGTGTGAAATACATACATGTACCATGCATGCCTATGGTTGCAAAGAAGGTCGAGATACCAACCTTTGTTGATTCTGCATGTGATCTTGATATGGAGCCAATTTATGATGAATGTGATGTAGACGATATGTTGGTGCGTCACGTGCGTGGCTTTGATGATCATATTTTACAAGAGTTCAATCCTAGTGCAGCTCTTGATATGGCCAACCCTGTGGCCTTTCTATCCATTCAAAGTGAACTACATCCACTCGAGGTCCATCTATTCAAGGCACATCCATTCAAGTTATATCCCTGCGAGGTCAGGCAGTTTCTCCTCAAGTATATCCACTCGAGGTACATGTCTAAAACGTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

312

Amino Acids

35.39

Weight (kDa)

4.9

Isoelectric Point (pI)

48.42

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0000314)

Species Orthologous Gene IDs
fragaria_vesca FvH4_1g02272 FvH4_1g22661 FvH4_2g10242 FvH4_2g34051 FvH4_3g19221 FvH4_3g29651 FvH4_3g30891 FvH4_4g11061 FvH4_5g09250 FvH4_5g15302 FvH4_5g15303 FvH4_5g15304 FvH4_5g28521 FvH4_6g23591 FvH4_7g05710 FvH4_7g19520
pyrus_communis pycom07g06330
rosa_chinensis RchiOBHm_Chr5g0027301 RchiOBHm_Chr6g0251451 RchiOBHm_Chr6g0274861
rosa_laevigata RLG00000007850
rosa_multiflora Rmu_co8230721.1_g000001 Rmu_sc0000271.1_g000027 Rmu_sc0000303.1_g000024 Rmu_sc0000368.1_g000024 Rmu_sc0000621.1_g000037 Rmu_sc0000693.1_g000081 Rmu_sc0001229.1_g000006 Rmu_sc0001373.1_g000003 Rmu_sc0001459.1_g000001 Rmu_sc0001744.1_g000002 Rmu_sc0001909.1_g000002 Rmu_sc0002053.1_g000012 Rmu_sc0002060.1_g000015 Rmu_sc0002119.1_g000036 Rmu_sc0002177.1_g000007 Rmu_sc0002822.1_g000024 Rmu_sc0002965.1_g000015 Rmu_sc0003363.1_g000051 Rmu_sc0003500.1_g000013 Rmu_sc0004191.1_g000020 Rmu_sc0004904.1_g000032 Rmu_sc0005325.1_g000008 Rmu_sc0005947.1_g000040 Rmu_sc0006475.1_g000001 Rmu_sc0006522.1_g000019 Rmu_sc0007102.1_g000005 Rmu_sc0007810.1_g000003 Rmu_sc0008339.1_g000025 Rmu_sc0008698.1_g000004 Rmu_sc0009313.1_g000006 Rmu_sc0009850.1_g000006 Rmu_sc0010598.1_g000003 Rmu_sc0011162.1_g000002 Rmu_sc0011824.1_g000004 Rmu_sc0011900.1_g000010 Rmu_sc0012291.1_g000006 Rmu_sc0012619.1_g000003 Rmu_sc0014679.1_g000001 Rmu_sc0019053.1_g000001 Rmu_sc0021462.1_g000003 Rmu_sc0024172.1_g000001 Rmu_sc0024173.1_g000001 Rmu_ssc0000052.1_g000016 Rmu_ssc0000392.1_g000010 Rmu_ssc0000421.1_g000062 Rmu_ssc0000479.1_g000006
rosa_roxburghii Rroxscaffold_153G00436600 Rroxscaffold_1G00008580 Rroxscaffold_1G00016770 Rroxscaffold_1G00029550 Rroxscaffold_1G00036450 Rroxscaffold_1G00040410 Rroxscaffold_1G00047110 Rroxscaffold_1G00060570 Rroxscaffold_2G00081500 Rroxscaffold_2G00081510 Rroxscaffold_2G00086080 Rroxscaffold_2G00099620 Rroxscaffold_2G00099630 Rroxscaffold_2G00099640 Rroxscaffold_2G00109170 Rroxscaffold_2G00127750 Rroxscaffold_2G00128590 Rroxscaffold_2G00130780 Rroxscaffold_2G00131040 Rroxscaffold_2G00143160 Rroxscaffold_3G00229280 Rroxscaffold_3G00229290 Rroxscaffold_3G00229970 Rroxscaffold_3G00242860 Rroxscaffold_3G00242890 Rroxscaffold_3G00242900 Rroxscaffold_3G00248200 Rroxscaffold_4G00284550 Rroxscaffold_4G00288780 Rroxscaffold_4G00298620 Rroxscaffold_4G00298630 Rroxscaffold_4G00312420 Rroxscaffold_4G00320310 Rroxscaffold_4G00322220 Rroxscaffold_4G00323600 Rroxscaffold_4G00331830 Rroxscaffold_4G00332010 Rroxscaffold_4G00332020 Rroxscaffold_5G00344470 Rroxscaffold_5G00345310 Rroxscaffold_5G00356120 Rroxscaffold_5G00368700 Rroxscaffold_5G00379820 Rroxscaffold_5G00382480 Rroxscaffold_6G00395080 Rroxscaffold_6G00405520 Rroxscaffold_6G00428210 Rroxscaffold_7G00193460
rosa_samantha Rh7CG413200 Rh7DG284900

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AasI GACNNNNNNGTC 1 cut(s) 190
AccB7I CCANNNNNTGG 1 cut(s) 515
AccI GTMKAC 2 cut(s) 5, 705
AciI CCGC 1 cut(s) 570
AcoI YGGCCR 3 cut(s) 457, 469, 786
AcsI RAATTY 1 cut(s) 541
AcuI CTGAAG 1 cut(s) 542
AcvI CACGTG 1 cut(s) 727
AfaI GTAC 3 cut(s) 498, 606, 920
AfiI CCNNNNNNNGG 1 cut(s) 515
AflIII ACRYGT 2 cut(s) 601, 921
AgsI TTSAA 4 cut(s) 763, 815, 850, 865
AleI CACNNNNGTG 1 cut(s) 729
AluBI AGCT 2 cut(s) 329, 776
AluI AGCT 2 cut(s) 329, 776
Ama87I CYCGRG 3 cut(s) 449, 833, 913
AoxI GGCC 6 cut(s) 108, 457, 469, 506, 786, 798
ApeKI GCWGC 1 cut(s) 773
ApoI RAATTY 1 cut(s) 541
AseI ATTAAT 1 cut(s) 465
AspS9I GGNCC 1 cut(s) 838
AsuHPI GGTGA 3 cut(s) 92, 242, 584
AsuII TTCGAA 1 cut(s) 218
AvaI CYCGRG 3 cut(s) 449, 833, 913
AvaII GGWCC 1 cut(s) 838
BalI TGGCCA 3 cut(s) 459, 471, 788
BarI GAAGNNNNNNTAC 2 cut(s) 318, 350
BbrPI CACGTG 1 cut(s) 727
BbvI GCAGC 1 cut(s) 785
BccI CCATC 5 cut(s) 143, 203, 221, 360, 849
BceAI ACGGC 1 cut(s) 95
BclI TGATCA 2 cut(s) 370, 742
BfaI CTAG 1 cut(s) 768
BisI GCNGC 1 cut(s) 774
BlsI GCNGC 1 cut(s) 775
Bme18I GGWCC 1 cut(s) 838
BmeT110I CYCGRG 3 cut(s) 449, 833, 913
BmgT120I GGNCC 1 cut(s) 838
BmiI GGNNCC 2 cut(s) 265, 681
BoxI GACNNNNGTC 1 cut(s) 300
Bpu14I TTCGAA 1 cut(s) 218
BpuEI CTTGAG 2 cut(s) 363, 884
BsaAI YACGTR 2 cut(s) 515, 727
BsaBI GATNNNNATC 1 cut(s) 129
BsaJI CCNNGG 1 cut(s) 259
Bsc4I CCNNNNNNNGG 1 cut(s) 515
Bse8I GATNNNNATC 1 cut(s) 129
BseDI CCNNGG 1 cut(s) 259
BseGI GGATG 3 cut(s) 130, 826, 856
BseJI GATNNNNATC 1 cut(s) 129
BseLI CCNNNNNNNGG 1 cut(s) 515
BseRI GAGGAG 1 cut(s) 887
BseXI GCAGC 1 cut(s) 785
BsgI GTGCAG 1 cut(s) 792
BshFI GGCC 6 cut(s) 110, 459, 471, 508, 788, 800
BsiHKCI CYCGRG 3 cut(s) 449, 833, 913
BslI CCNNNNNNNGG 1 cut(s) 515
BsnI GGCC 6 cut(s) 110, 459, 471, 508, 788, 800
BsoBI CYCGRG 3 cut(s) 449, 833, 913
Bsp119I TTCGAA 1 cut(s) 218
Bsp143I GATC 4 cut(s) 210, 370, 667, 742
BspACI CCGC 1 cut(s) 570
BspANI GGCC 6 cut(s) 110, 459, 471, 508, 788, 800
BspHI TCATGA 1 cut(s) 367
BspLI GGNNCC 2 cut(s) 265, 681
BspT104I TTCGAA 1 cut(s) 218
BssECI CCNNGG 1 cut(s) 259
BssMI GATC 4 cut(s) 210, 370, 667, 742
BssT1I CCWWGG 1 cut(s) 259
Bst6I CTCTTC 1 cut(s) 201
BstBAI YACGTR 2 cut(s) 515, 727
BstBI TTCGAA 1 cut(s) 218
BstC8I GCNNGC 2 cut(s) 331, 614
BstDEI CTNAG 1 cut(s) 199
BstF5I GGATG 3 cut(s) 130, 826, 856
BstKTI GATC 4 cut(s) 213, 373, 670, 745
BstMBI GATC 4 cut(s) 210, 370, 667, 742
BstMWI GCNNNNNNNGC 1 cut(s) 727
BstNSI RCATGY 4 cut(s) 605, 616, 666, 925
BstPAI GACNNNNGTC 1 cut(s) 300
BstV1I GCAGC 1 cut(s) 785
BstXI CCANNNNNNTGG 3 cut(s) 20, 467, 796
BsuRI GGCC 6 cut(s) 110, 459, 471, 508, 788, 800
BtsCI GGATG 3 cut(s) 130, 826, 856
BtsIMutI CAGTG 1 cut(s) 222
Cac8I GCNNGC 2 cut(s) 331, 614
CciI TCATGA 1 cut(s) 367
Cfr13I GGNCC 1 cut(s) 838
CseI GACGC 1 cut(s) 710
Csp6I GTAC 3 cut(s) 497, 605, 919
CviAII CATG 8 cut(s) 247, 311, 368, 602, 609, 613, 663, 922
CviQI GTAC 3 cut(s) 497, 605, 919
DdeI CTNAG 1 cut(s) 199
DpnI GATC 4 cut(s) 212, 372, 669, 744
DpnII GATC 4 cut(s) 210, 370, 667, 742
DrdI GACNNNNNNGTC 1 cut(s) 190
DseDI GACNNNNNNGTC 1 cut(s) 190
EaeI YGGCCR 3 cut(s) 457, 469, 786
Eam1104I CTCTTC 1 cut(s) 201
EarI CTCTTC 1 cut(s) 201
Eco130I CCWWGG 1 cut(s) 259
Eco47I GGWCC 1 cut(s) 838
Eco57I CTGAAG 1 cut(s) 542
Eco72I CACGTG 1 cut(s) 727
Eco88I CYCGRG 3 cut(s) 449, 833, 913
EcoT14I CCWWGG 1 cut(s) 259
EcoT22I ATGCAT 1 cut(s) 614
ErhI CCWWGG 1 cut(s) 259
FaeI CATG 8 cut(s) 250, 314, 371, 605, 612, 616, 666, 925
FatI CATG 8 cut(s) 246, 310, 367, 601, 608, 612, 662, 921
FbaI TGATCA 2 cut(s) 370, 742
FblI GTMKAC 2 cut(s) 5, 705
Fnu4HI GCNGC 1 cut(s) 774
FokI GGATG 3 cut(s) 117, 813, 843
Fsp4HI GCNGC 1 cut(s) 774
FspBI CTAG 1 cut(s) 768
GluI GCNGC 1 cut(s) 774
HaeIII GGCC 6 cut(s) 110, 459, 471, 508, 788, 800
HgaI GACGC 1 cut(s) 710
Hin1II CATG 8 cut(s) 250, 314, 371, 605, 612, 616, 666, 925
HincII GTYRAC 2 cut(s) 256, 349
HindII GTYRAC 2 cut(s) 256, 349
HinfI GANTC 1 cut(s) 656
HpaI GTTAAC 1 cut(s) 349
HphI GGTGA 3 cut(s) 92, 242, 584
Hpy166II GTNNAC 7 cut(s) 6, 233, 256, 295, 349, 706, 821
Hpy188I TCNGA 1 cut(s) 561
Hpy188III TCNNGA 7 cut(s) 161, 368, 438, 449, 637, 671, 779
Hpy8I GTNNAC 7 cut(s) 6, 233, 256, 295, 349, 706, 821
HpyAV CCTTC 3 cut(s) 344, 395, 625
HpyCH4IV ACGT 6 cut(s) 50, 285, 442, 514, 726, 932
HpyCH4V TGCA 7 cut(s) 280, 503, 553, 612, 626, 662, 773
HpyF10VI GCNNNNNNNGC 1 cut(s) 727
HpyF3I CTNAG 1 cut(s) 199
HpySE526I ACGT 6 cut(s) 50, 285, 442, 514, 726, 932
Hsp92II CATG 8 cut(s) 250, 314, 371, 605, 612, 616, 666, 925
Ksp22I TGATCA 2 cut(s) 370, 742
KspAI GTTAAC 1 cut(s) 349
Kzo9I GATC 4 cut(s) 210, 370, 667, 742
LmnI GCTCC 2 cut(s) 263, 679
LpnPI CCDG 7 cut(s) 22, 111, 372, 423, 807, 871, 889
Lsp1109I GCAGC 1 cut(s) 785
MaeI CTAG 1 cut(s) 768
MaeII ACGT 6 cut(s) 50, 285, 442, 514, 726, 932
MaeIII GTNAC 3 cut(s) 85, 572, 722
MalI GATC 4 cut(s) 212, 372, 669, 744
MboI GATC 4 cut(s) 210, 370, 667, 742
MboII GAAGA 4 cut(s) 38, 215, 218, 426
MlsI TGGCCA 3 cut(s) 459, 471, 788
MluCI AATT 9 cut(s) 60, 164, 239, 268, 428, 462, 478, 541, 684
MluNI TGGCCA 3 cut(s) 459, 471, 788
MnlI CCTC 8 cut(s) 94, 100, 169, 387, 829, 874, 908, 909
Mox20I TGGCCA 3 cut(s) 459, 471, 788
Mph1103I ATGCAT 1 cut(s) 614
MscI TGGCCA 3 cut(s) 459, 471, 788
MseI TTAA 4 cut(s) 156, 348, 465, 477
MslI CAYNNNNRTG 2 cut(s) 617, 729
Msp20I TGGCCA 3 cut(s) 459, 471, 788
MwoI GCNNNNNNNGC 1 cut(s) 727
NdeII GATC 4 cut(s) 210, 370, 667, 742
NlaIII CATG 8 cut(s) 250, 314, 371, 605, 612, 616, 666, 925
NlaIV GGNNCC 2 cut(s) 265, 681
NmuCI GTSAC 2 cut(s) 572, 722
NsiI ATGCAT 1 cut(s) 614
NspI RCATGY 4 cut(s) 605, 616, 666, 925
NspV TTCGAA 1 cut(s) 218
OliI CACNNNNGTG 1 cut(s) 729
PaeI GCATGC 1 cut(s) 616
PaeR7I CTCGAG 3 cut(s) 449, 833, 913
PagI TCATGA 1 cut(s) 367
PciI ACATGT 2 cut(s) 601, 921
PfeI GAWTC 1 cut(s) 656
PflMI CCANNNNNTGG 1 cut(s) 515
PkrI GCNGC 1 cut(s) 775
PmaCI CACGTG 1 cut(s) 727
PmlI CACGTG 1 cut(s) 727
Ppu21I YACGTR 2 cut(s) 515, 727
PscI ACATGT 2 cut(s) 601, 921
PshAI GACNNNNGTC 1 cut(s) 300
PshBI ATTAAT 1 cut(s) 465
PspCI CACGTG 1 cut(s) 727
PspN4I GGNNCC 2 cut(s) 265, 681
PspPI GGNCC 1 cut(s) 838
PspXI VCTCGAGB 2 cut(s) 833, 913
RsaI GTAC 3 cut(s) 498, 606, 920
RsaNI GTAC 3 cut(s) 497, 605, 919
RseI CAYNNNNRTG 2 cut(s) 617, 729
SaqAI TTAA 4 cut(s) 156, 348, 465, 477
SatI GCNGC 1 cut(s) 774
Sau3AI GATC 4 cut(s) 210, 370, 667, 742
Sau96I GGNCC 1 cut(s) 838
Sfr274I CTCGAG 3 cut(s) 449, 833, 913
SfuI TTCGAA 1 cut(s) 218
SinI GGWCC 1 cut(s) 838
SlaI CTCGAG 3 cut(s) 449, 833, 913
SmiMI CAYNNNNRTG 2 cut(s) 617, 729
SmlI CTYRAG 5 cut(s) 378, 449, 833, 899, 913
SmoI CTYRAG 5 cut(s) 378, 449, 833, 899, 913
SphI GCATGC 1 cut(s) 616
Sse9I AATT 9 cut(s) 60, 164, 239, 268, 428, 462, 478, 541, 684
SsiI CCGC 1 cut(s) 570
SspMI CTAG 1 cut(s) 768
StyI CCWWGG 1 cut(s) 259
TaiI ACGT 6 cut(s) 53, 288, 445, 517, 729, 935
TaqI TCGA 6 cut(s) 105, 218, 450, 636, 834, 914
TasI AATT 9 cut(s) 60, 164, 239, 268, 428, 462, 478, 541, 684
TatI WGTACW 1 cut(s) 496
TfiI GAWTC 1 cut(s) 656
Tru1I TTAA 4 cut(s) 156, 348, 465, 477
Tru9I TTAA 4 cut(s) 156, 348, 465, 477
TscAI CASTG 1 cut(s) 229
TseFI GTSAC 2 cut(s) 572, 722
TseI GCWGC 1 cut(s) 773
Tsp45I GTSAC 2 cut(s) 572, 722
TspDTI ATGAA 6 cut(s) 57, 263, 326, 356, 414, 708
TspRI CASTG 1 cut(s) 229
Van91I CCANNNNNTGG 1 cut(s) 515
VpaK11BI GGWCC 1 cut(s) 838
VspI ATTAAT 1 cut(s) 465
XapI RAATTY 1 cut(s) 541
XceI RCATGY 4 cut(s) 605, 616, 666, 925
XhoI CTCGAG 3 cut(s) 449, 833, 913
XmiI GTMKAC 2 cut(s) 5, 705
XspI CTAG 1 cut(s) 768
Zsp2I ATGCAT 1 cut(s) 614
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.