Basic Information

Type: gene

Biological Identity

Species

rosa_roxburghii

Chromosome

GWHEROQ00000005

Orthogroup ID

OG0000314

Physical Location & Seq

Genomic Coordinates Forward (+)

15699426 .. 15700815

Gene Structure 1390 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rroxscaffold_5G00345310.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1170 bp

ATGAGCGAGTTTACGACGACGAAGCAAGCCATGGAGGCCATCCCAAACCAAAACAAGCAGACCTCATCGGAGTTCTTGACCTTGAGCAAAGAAGGTTCCAGCTTGGCCACTCAAGTCTATTCACGGCAAGGCAAATTGGAAAGTCAAGAATCGCACGCAAGGAGGTTGTTTCGAGGTGGCGATAAACCTAAATGCCTCACTAATGAATCAAATCCTTACACAGAGGCTGTATATGGAAAACATGGTCCACAAGATTGTTCTTCTGACAAGAAAGAAACATGTGGCCTTGCTACTGGACACCACCATGATCAAGAAATTGATCATAATCATGGTCAAGAACATGACCCACTCAATTTTCAATCAAGATATGACCATGCAGAGGATCAATCAAGACAGGGCCCACTTTATCATCAATTTTACCTTGGCTATGCTACTGGACATCATGGTGGCCACAATCATGGCCAACTTAATTATCAATTAAGTTTTGGTCTTGGAAAGCCAATTTGTGGCTTTATTAATCAATTCAACTTGAAGCTCTTCATATATGCTTCAAGGCTAGGTGGTGGCTTTGATATATGTGGGAGACACATCTGCAACCCACCTTGCAAGAATGGCCAGAACAATTATTCTAGTGGCCAGTTTGTCCTTCGCGACCGTAAGTTTGAGTATCATCAATACAAGTTAACTCTTGTTTACAATAATCCAGCTCTAAATTTCTTGCAAAAGGAATTTATCTATGATGATACCAAACAGTCCATAGGGGCATCTCAATATGATGCCTGGAAAGAAAATAGGGGCAAACAAATGTTTGATATGCCTATTTTTGCAGAGGAGATCAATTCATCAAATTTTGGTGATTCTAAATATGATCTTGATGCAGAGCCAATATATGATGAATATGATGATAATTATAATTTAATTATTGGTTCCAAAAATCATATGCAGGGGTTCAAGTTCTTTGAAGCTCTTGATGTGGAGAATTTAGACCAACAAGTGGTCAAATACAAAAGCCAATTTGTGGCTTATTCTAGAGAGACCATGTTCTATGACATGATAGTTGGCAACAAAGCCGATCTTGGGACACCGTCATCTCCAGAATTGCAATTGAAGATCATGGTTCGTCAACCAACAAAGATACTTGGGGGCAATATTACTCCTTCTACGAGCTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003676 GO:0003723 GO:0003824 GO:0004652 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005829 GO:0006139 GO:0006276 GO:0006378 GO:0006396 GO:0006397 GO:0006725 GO:0006807 GO:0008150 GO:0008152 GO:0009451 GO:0009987 GO:0010467 GO:0016070 GO:0016071 GO:0016740 GO:0016772 GO:0016779 GO:0031123 GO:0031124 GO:0034641 GO:0043170 GO:0043412 GO:0043631 GO:0044237 GO:0044238 GO:0044424 GO:0044444 GO:0044464 GO:0046483 GO:0070566 GO:0071704 GO:0090304 GO:0097159 GO:1901360 GO:1901363

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

PolyA_pol PolyA_pol_RNAbd

Protein Analysis

389

Amino Acids

44.3

Weight (kDa)

6.09

Isoelectric Point (pI)

45.51

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0000314)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_1g02272 FvH4_1g22661 FvH4_2g10242 FvH4_2g34051 FvH4_3g19221 FvH4_3g29651 FvH4_3g30891 FvH4_4g11061 FvH4_5g09250 FvH4_5g15302 FvH4_5g15303 FvH4_5g15304 FvH4_5g28521 FvH4_6g23591 FvH4_7g05710 FvH4_7g19520
pyrus_communis	pycom07g06330
rosa_chinensis	RchiOBHm_Chr5g0027301 RchiOBHm_Chr6g0251451 RchiOBHm_Chr6g0274861
rosa_laevigata	RLG00000007850
rosa_multiflora	Rmu_co8230721.1_g000001 Rmu_sc0000271.1_g000027 Rmu_sc0000303.1_g000024 Rmu_sc0000368.1_g000024 Rmu_sc0000621.1_g000037 Rmu_sc0000693.1_g000081 Rmu_sc0001229.1_g000006 Rmu_sc0001373.1_g000003 Rmu_sc0001459.1_g000001 Rmu_sc0001744.1_g000002 Rmu_sc0001909.1_g000002 Rmu_sc0002053.1_g000012 Rmu_sc0002060.1_g000015 Rmu_sc0002119.1_g000036 Rmu_sc0002177.1_g000007 Rmu_sc0002822.1_g000024 Rmu_sc0002965.1_g000015 Rmu_sc0003363.1_g000051 Rmu_sc0003500.1_g000013 Rmu_sc0004191.1_g000020 Rmu_sc0004904.1_g000032 Rmu_sc0005325.1_g000008 Rmu_sc0005947.1_g000040 Rmu_sc0006475.1_g000001 Rmu_sc0006522.1_g000019 Rmu_sc0007102.1_g000005 Rmu_sc0007810.1_g000003 Rmu_sc0008339.1_g000025 Rmu_sc0008698.1_g000004 Rmu_sc0009313.1_g000006 Rmu_sc0009850.1_g000006 Rmu_sc0010598.1_g000003 Rmu_sc0011162.1_g000002 Rmu_sc0011824.1_g000004 Rmu_sc0011900.1_g000010 Rmu_sc0012291.1_g000006 Rmu_sc0012619.1_g000003 Rmu_sc0014679.1_g000001 Rmu_sc0019053.1_g000001 Rmu_sc0021462.1_g000003 Rmu_sc0024172.1_g000001 Rmu_sc0024173.1_g000001 Rmu_ssc0000052.1_g000016 Rmu_ssc0000392.1_g000010 Rmu_ssc0000421.1_g000062 Rmu_ssc0000479.1_g000006
rosa_roxburghii	Rroxscaffold_153G00436600 Rroxscaffold_1G00008580 Rroxscaffold_1G00016770 Rroxscaffold_1G00029550 Rroxscaffold_1G00036450 Rroxscaffold_1G00040410 Rroxscaffold_1G00047110 Rroxscaffold_1G00060570 Rroxscaffold_2G00081500 Rroxscaffold_2G00081510 Rroxscaffold_2G00086080 Rroxscaffold_2G00099620 Rroxscaffold_2G00099630 Rroxscaffold_2G00099640 Rroxscaffold_2G00109170 Rroxscaffold_2G00127750 Rroxscaffold_2G00128590 Rroxscaffold_2G00130780 Rroxscaffold_2G00131040 Rroxscaffold_2G00143160 Rroxscaffold_3G00229280 Rroxscaffold_3G00229290 Rroxscaffold_3G00229970 Rroxscaffold_3G00242860 Rroxscaffold_3G00242890 Rroxscaffold_3G00242900 Rroxscaffold_3G00248200 Rroxscaffold_4G00284550 Rroxscaffold_4G00288780 Rroxscaffold_4G00298620 Rroxscaffold_4G00298630 Rroxscaffold_4G00312420 Rroxscaffold_4G00320310 Rroxscaffold_4G00322220 Rroxscaffold_4G00323600 Rroxscaffold_4G00331830 Rroxscaffold_4G00332010 Rroxscaffold_4G00332020 Rroxscaffold_5G00344470 Rroxscaffold_5G00345310 Rroxscaffold_5G00356120 Rroxscaffold_5G00368700 Rroxscaffold_5G00379820 Rroxscaffold_5G00382480 Rroxscaffold_6G00395080 Rroxscaffold_6G00405520 Rroxscaffold_6G00428210 Rroxscaffold_7G00193460
rosa_samantha	Rh7CG413200 Rh7DG284900

Restriction Enzyme Sites

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Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	1 cut(s)	912
AccB7I	CCANNNNNTGG	3 cut(s)	506, 994, 1018
AccII	CGCG	1 cut(s)	651
AclWI	GGATC	1 cut(s)	390
AcoI	YGGCCR	5 cut(s)	105, 448, 460, 613, 634
AcsI	RAATTY	4 cut(s)	712, 728, 847, 979
AfiI	CCNNNNNNNGG	5 cut(s)	379, 506, 994, 1018, 1077
AflIII	ACRYGT	1 cut(s)	278
AgsI	TTSAA	7 cut(s)	359, 526, 532, 552, 952, 962, 1108
AjnI	CCWGG	1 cut(s)	779
AluBI	AGCT	5 cut(s)	102, 535, 707, 965, 1167
AluI	AGCT	5 cut(s)	102, 535, 707, 965, 1167
Alw26I	GTCTC	2 cut(s)	577, 1028
AlwI	GGATC	1 cut(s)	390
AlwNI	CAGNNNCTG	1 cut(s)	227
AoxI	GGCC	8 cut(s)	36, 105, 283, 397, 448, 460, 613, 634
ApaI	GGGCCC	1 cut(s)	401
ApoI	RAATTY	4 cut(s)	712, 728, 847, 979
ArsI	GACNNNNNNTTYG	2 cut(s)	644, 676
AseI	ATTAAT	1 cut(s)	516
Asp700I	GAANNNNTTC	1 cut(s)	536
AspS9I	GGNCC	3 cut(s)	245, 397, 398
AsuHPI	GGTGA	1 cut(s)	866
AvaII	GGWCC	1 cut(s)	245
BaeGI	GKGCMC	1 cut(s)	401
BalI	TGGCCA	5 cut(s)	107, 450, 462, 615, 636
BanII	GRGCYC	1 cut(s)	401
BccI	CCATC	1 cut(s)	47
BceAI	ACGGC	1 cut(s)	140
BciT130I	CCWGG	1 cut(s)	781
BclI	TGATCA	2 cut(s)	307, 319
BcoDI	GTCTC	2 cut(s)	577, 1028
BfaI	CTAG	3 cut(s)	557, 630, 1029
BglI	GCCNNNNNGGC	1 cut(s)	35
Bme1390I	CCNGG	1 cut(s)	781
Bme18I	GGWCC	1 cut(s)	245
BmgT120I	GGNCC	3 cut(s)	245, 397, 398
BmiI	GGNNCC	3 cut(s)	97, 399, 928
BmrFI	CCNGG	1 cut(s)	781
BmsI	GCATC	3 cut(s)	766, 773, 865
BpmI	CTGGAG	1 cut(s)	1077
BpuEI	CTTGAG	2 cut(s)	96, 103
BsaBI	GATNNNNATC	1 cut(s)	324
BsaI	GGTCTC	1 cut(s)	1028
BsaJI	CCNNGG	2 cut(s)	30, 421
Bsc4I	CCNNNNNNNGG	5 cut(s)	379, 506, 994, 1018, 1077
Bse1I	ACTGG	3 cut(s)	298, 439, 637
Bse8I	GATNNNNATC	1 cut(s)	324
BseBI	CCWGG	1 cut(s)	781
BseDI	CCNNGG	2 cut(s)	30, 421
BseGI	GGATG	1 cut(s)	39
BseJI	GATNNNNATC	1 cut(s)	324
BseLI	CCNNNNNNNGG	5 cut(s)	379, 506, 994, 1018, 1077
BseNI	ACTGG	3 cut(s)	298, 439, 637
BseRI	GAGGAG	1 cut(s)	845
BseSI	GKGCMC	1 cut(s)	401
Bsh1236I	CGCG	1 cut(s)	651
Bsh1285I	CGRYCG	1 cut(s)	655
BshFI	GGCC	8 cut(s)	38, 107, 285, 399, 450, 462, 615, 636
BsiEI	CGRYCG	1 cut(s)	655
BslFI	GGGAC	1 cut(s)	1093
BslI	CCNNNNNNNGG	5 cut(s)	379, 506, 994, 1018, 1077
BsmAI	GTCTC	2 cut(s)	577, 1028
BsmFI	GGGAC	1 cut(s)	1093
BsnI	GGCC	8 cut(s)	38, 107, 285, 399, 450, 462, 615, 636
Bso31I	GGTCTC	1 cut(s)	1028
Bsp120I	GGGCCC	1 cut(s)	397
Bsp1286I	GDGCHC	1 cut(s)	401
Bsp143I	GATC	7 cut(s)	307, 319, 382, 834, 868, 1072, 1110
Bsp19I	CCATGG	1 cut(s)	30
Bsp68I	TCGCGA	1 cut(s)	651
BspANI	GGCC	8 cut(s)	38, 107, 285, 399, 450, 462, 615, 636
BspFNI	CGCG	1 cut(s)	651
BspLI	GGNNCC	3 cut(s)	97, 399, 928
BspPI	GGATC	1 cut(s)	390
BspQI	GCTCTTC	1 cut(s)	542
BspTNI	GGTCTC	1 cut(s)	1028
BsrI	ACTGG	3 cut(s)	298, 439, 637
BssECI	CCNNGG	2 cut(s)	30, 421
BssMI	GATC	7 cut(s)	307, 319, 382, 834, 868, 1072, 1110
BssT1I	CCWWGG	2 cut(s)	30, 421
Bst2UI	CCWGG	1 cut(s)	781
Bst4CI	ACNGT	3 cut(s)	656, 753, 1086
Bst6I	CTCTTC	1 cut(s)	542
BstC8I	GCNNGC	2 cut(s)	27, 156
BstDSI	CCRYGG	1 cut(s)	30
BstF5I	GGATG	1 cut(s)	39
BstFNI	CGCG	1 cut(s)	651
BstKTI	GATC	7 cut(s)	310, 322, 385, 837, 871, 1075, 1113
BstMAI	GTCTC	2 cut(s)	577, 1028
BstMBI	GATC	7 cut(s)	307, 319, 382, 834, 868, 1072, 1110
BstMCI	CGRYCG	1 cut(s)	655
BstMWI	GCNNNNNNNGC	2 cut(s)	35, 612
BstNI	CCWGG	1 cut(s)	781
BstNSI	RCATGY	1 cut(s)	282
BstSCI	CCNGG	1 cut(s)	779
BstSLI	GKGCMC	1 cut(s)	401
BstUI	CGCG	1 cut(s)	651
BstXI	CCANNNNNNTGG	1 cut(s)	458
BsuRI	GGCC	8 cut(s)	38, 107, 285, 399, 450, 462, 615, 636
BtgI	CCRYGG	1 cut(s)	30
BtsCI	GGATG	1 cut(s)	39
BtuMI	TCGCGA	1 cut(s)	651
Cac8I	GCNNGC	2 cut(s)	27, 156
CaiI	CAGNNNCTG	1 cut(s)	227
Cfr13I	GGNCC	3 cut(s)	245, 397, 398
DpnI	GATC	7 cut(s)	309, 321, 384, 836, 870, 1074, 1112
DpnII	GATC	7 cut(s)	307, 319, 382, 834, 868, 1072, 1110
EaeI	YGGCCR	5 cut(s)	105, 448, 460, 613, 634
Eam1104I	CTCTTC	1 cut(s)	542
EarI	CTCTTC	1 cut(s)	542
Eco130I	CCWWGG	2 cut(s)	30, 421
Eco24I	GRGCYC	1 cut(s)	401
Eco31I	GGTCTC	1 cut(s)	1028
Eco47I	GGWCC	1 cut(s)	245
EcoO109I	RGGNCCY	1 cut(s)	397
EcoRII	CCWGG	1 cut(s)	779
EcoT14I	CCWWGG	2 cut(s)	30, 421
EcoT38I	GRGCYC	1 cut(s)	401
ErhI	CCWWGG	2 cut(s)	30, 421
FalI	AAGNNNNNCTT	2 cut(s)	1059, 1091
FaqI	GGGAC	1 cut(s)	1093
FauNDI	CATATG	1 cut(s)	939
FbaI	TGATCA	2 cut(s)	307, 319
FokI	GGATG	1 cut(s)	26
FriOI	GRGCYC	1 cut(s)	401
FspBI	CTAG	3 cut(s)	557, 630, 1029
GsuI	CTGGAG	1 cut(s)	1077
HaeIII	GGCC	8 cut(s)	38, 107, 285, 399, 450, 462, 615, 636
HincII	GTYRAC	2 cut(s)	684, 1124
HindII	GTYRAC	2 cut(s)	684, 1124
HinfI	GANTC	3 cut(s)	149, 206, 857
HpaI	GTTAAC	1 cut(s)	684
HphI	GGTGA	1 cut(s)	866
Hpy166II	GTNNAC	5 cut(s)	12, 248, 684, 694, 1124
Hpy188I	TCNGA	2 cut(s)	70, 265
Hpy8I	GTNNAC	5 cut(s)	12, 248, 684, 694, 1124
Hpy99I	CGWCG	2 cut(s)	19, 22
HpyAV	CCTTC	3 cut(s)	86, 656, 1167
HpyCH4III	ACNGT	3 cut(s)	656, 753, 1086
HpyCH4V	TGCA	8 cut(s)	377, 594, 606, 721, 827, 878, 943, 1102
HpyF10VI	GCNNNNNNNGC	2 cut(s)	35, 612
Ksp22I	TGATCA	2 cut(s)	307, 319
KspAI	GTTAAC	1 cut(s)	684
Kzo9I	GATC	7 cut(s)	307, 319, 382, 834, 868, 1072, 1110
LguI	GCTCTTC	1 cut(s)	542
LweI	GCATC	3 cut(s)	766, 773, 865
MaeI	CTAG	3 cut(s)	557, 630, 1029
MalI	GATC	7 cut(s)	309, 321, 384, 836, 870, 1074, 1112
MboI	GATC	7 cut(s)	307, 319, 382, 834, 868, 1072, 1110
MboII	GAAGA	3 cut(s)	252, 529, 1120
MfeI	CAATTG	1 cut(s)	1103
MhlI	GDGCHC	1 cut(s)	401
MlsI	TGGCCA	5 cut(s)	107, 450, 462, 615, 636
MluNI	TGGCCA	5 cut(s)	107, 450, 462, 615, 636
MnlI	CCTC	8 cut(s)	28, 73, 156, 167, 206, 217, 373, 823
Mox20I	TGGCCA	5 cut(s)	107, 450, 462, 615, 636
MroXI	GAANNNNTTC	1 cut(s)	536
MscI	TGGCCA	5 cut(s)	107, 450, 462, 615, 636
MseI	TTAA	5 cut(s)	468, 479, 516, 683, 917
MslI	CAYNNNNRTG	4 cut(s)	303, 327, 444, 456
Msp20I	TGGCCA	5 cut(s)	107, 450, 462, 615, 636
MspR9I	CCNGG	1 cut(s)	781
MunI	CAATTG	1 cut(s)	1103
MvaI	CCWGG	1 cut(s)	781
MvnI	CGCG	1 cut(s)	651
MwoI	GCNNNNNNNGC	2 cut(s)	35, 612
NcoI	CCATGG	1 cut(s)	30
NdeI	CATATG	1 cut(s)	939
NdeII	GATC	7 cut(s)	307, 319, 382, 834, 868, 1072, 1110
NlaIV	GGNNCC	3 cut(s)	97, 399, 928
NruI	TCGCGA	1 cut(s)	651
NspI	RCATGY	1 cut(s)	282
PciI	ACATGT	1 cut(s)	278
PciSI	GCTCTTC	1 cut(s)	542
PdmI	GAANNNNTTC	1 cut(s)	536
PfeI	GAWTC	3 cut(s)	149, 206, 857
PflFI	GACNNNGTC	1 cut(s)	1084
PflMI	CCANNNNNTGG	3 cut(s)	506, 994, 1018
PscI	ACATGT	1 cut(s)	278
PshBI	ATTAAT	1 cut(s)	516
PsiI	TTATAA	1 cut(s)	912
Psp6I	CCWGG	1 cut(s)	779
PspGI	CCWGG	1 cut(s)	779
PspN4I	GGNNCC	3 cut(s)	97, 399, 928
PspOMI	GGGCCC	1 cut(s)	397
PspPI	GGNCC	3 cut(s)	245, 397, 398
PstNI	CAGNNNCTG	1 cut(s)	227
PsyI	GACNNNGTC	1 cut(s)	1084
RruI	TCGCGA	1 cut(s)	651
RseI	CAYNNNNRTG	4 cut(s)	303, 327, 444, 456
SapI	GCTCTTC	1 cut(s)	542
SaqAI	TTAA	5 cut(s)	468, 479, 516, 683, 917
Sau3AI	GATC	7 cut(s)	307, 319, 382, 834, 868, 1072, 1110
Sau96I	GGNCC	3 cut(s)	245, 397, 398
ScrFI	CCNGG	1 cut(s)	781
SduI	GDGCHC	1 cut(s)	401
SfaNI	GCATC	3 cut(s)	766, 773, 865
SinI	GGWCC	1 cut(s)	245
SmiMI	CAYNNNNRTG	4 cut(s)	303, 327, 444, 456
SmlI	CTYRAG	2 cut(s)	82, 111
SmoI	CTYRAG	2 cut(s)	82, 111
SspI	AATATT	1 cut(s)	1150
SspMI	CTAG	3 cut(s)	557, 630, 1029
StyD4I	CCNGG	1 cut(s)	779
StyI	CCWWGG	2 cut(s)	30, 421
TaaI	ACNGT	3 cut(s)	656, 753, 1086
TaqI	TCGA	1 cut(s)	172
TfiI	GAWTC	3 cut(s)	149, 206, 857
Tru1I	TTAA	5 cut(s)	468, 479, 516, 683, 917
Tru9I	TTAA	5 cut(s)	468, 479, 516, 683, 917
TspDTI	ATGAA	4 cut(s)	219, 529, 831, 909
Tth111I	GACNNNGTC	1 cut(s)	1084
Van91I	CCANNNNNTGG	3 cut(s)	506, 994, 1018
VpaK11BI	GGWCC	1 cut(s)	245
VspI	ATTAAT	1 cut(s)	516
XapI	RAATTY	4 cut(s)	712, 728, 847, 979
XbaI	TCTAGA	1 cut(s)	1028
XceI	RCATGY	1 cut(s)	282
XmnI	GAANNNNTTC	1 cut(s)	536
XspI	CTAG	3 cut(s)	557, 630, 1029

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.