Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_sc0002822.1

Orthogroup ID

OG0000314

Physical Location & Seq

Genomic Coordinates Forward (+)

92485 .. 93933

Gene Structure 1449 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_sc0002822.1_g000024.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1449 bp

atgtcaacttcacaaggtgagaatcgctcgaccacgactgagggtcagagcgtcaatactaatcaggccagcgagcctgttaattccgccactgtcaacactgtagtggcaggtgatgaggaagaggcttttgtttcgaagcctattccggaaggagcgaccttcgaggagacactcgcgatccttatggagaatgtcgagaatcatctcaagaagatgaaagctgagcttgccagggaaaccgcgaaggcgaatcgactcacacgcgaaatggacgagaacgctcagaaagctaaagagcaaagggagcggcgcgatcgagaagctgaacaacgcaatcgagagcttacccagcggaggaaacaggaagaccaagagtgggcaagacaatatcaacatatcctggatcgtatagcgacctcgcgcaagggagattccagcttgactacacaagtcggttcacaacaaggcgaattggaaagccaaaaatcttcgcgcgaagaggttgtttctaaggttgaattgcctacaaatggcaataaacctaaatgcctcattgatgagtcacggccttacatagaggccttgcatggagaagatggtcaacaagattgttcccctgacaatataattgtttcagaacaaatatatgatttctccactaatcaagccaaatacgtggctgttaatcagatgcatggggggcatgatattgtccaggttcacccccttagtaaccagaagcagctgtatgatcaatttaattatggttatgctgctggacgtcatcatgaccaaggtaatcaaagccacaatcaacttaattatgaattaagttgttatatggctgctggacgtcctcatcatgcagaaggtcaagagtgtggtccccttaattatcaattaaggcatgggccacttgattatcaattatgttttggtcttgagaagccaatctgtggctttattaatcaattcaatttgaagatcttcatatatgtttcaaggccagtcagtggctttgaaatttgtaaagaaggattcggtgaccccaagtccagtcttgacacagagccaatctatgatgaatatgatgataattataatttaattattggttccaaaaatcatatgcagcggttcaaatcccttgaacaagtggtcaaacacaatagccaatctgtggcttattcagaagacaccatgttctatgacatggtggttggcgacaaagccgatcttgggacaacgtcatctccaaaatttcaattggagatctcgcttcgtcaaccaacaaagatacttggggggcaatattactccttctacgagccaaatttctttcaagtgttcgacgcgaagtatctttgttattttattacaagctcccgcaagagggattttcatgccataaattttgatcctcctccgtggcgttctagaggttag

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003676 GO:0003723 GO:0003824 GO:0004652 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005829 GO:0006139 GO:0006276 GO:0006378 GO:0006396 GO:0006397 GO:0006725 GO:0006807 GO:0008150 GO:0008152 GO:0009451 GO:0009987 GO:0010467 GO:0016070 GO:0016071 GO:0016740 GO:0016772 GO:0016779 GO:0031123 GO:0031124 GO:0034641 GO:0043170 GO:0043412 GO:0043631 GO:0044237 GO:0044238 GO:0044424 GO:0044444 GO:0044464 GO:0046483 GO:0070566 GO:0071704 GO:0090304 GO:0097159 GO:1901360 GO:1901363

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

PolyA_pol PolyA_pol_RNAbd

Protein Analysis

482

Amino Acids

55.07

Weight (kDa)

5.48

Isoelectric Point (pI)

50.41

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0000314)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_1g02272 FvH4_1g22661 FvH4_2g10242 FvH4_2g34051 FvH4_3g19221 FvH4_3g29651 FvH4_3g30891 FvH4_4g11061 FvH4_5g09250 FvH4_5g15302 FvH4_5g15303 FvH4_5g15304 FvH4_5g28521 FvH4_6g23591 FvH4_7g05710 FvH4_7g19520
pyrus_communis	pycom07g06330
rosa_chinensis	RchiOBHm_Chr5g0027301 RchiOBHm_Chr6g0251451 RchiOBHm_Chr6g0274861
rosa_laevigata	RLG00000007850
rosa_multiflora	Rmu_co8230721.1_g000001 Rmu_sc0000271.1_g000027 Rmu_sc0000303.1_g000024 Rmu_sc0000368.1_g000024 Rmu_sc0000621.1_g000037 Rmu_sc0000693.1_g000081 Rmu_sc0001229.1_g000006 Rmu_sc0001373.1_g000003 Rmu_sc0001459.1_g000001 Rmu_sc0001744.1_g000002 Rmu_sc0001909.1_g000002 Rmu_sc0002053.1_g000012 Rmu_sc0002060.1_g000015 Rmu_sc0002119.1_g000036 Rmu_sc0002177.1_g000007 Rmu_sc0002822.1_g000024 Rmu_sc0002965.1_g000015 Rmu_sc0003363.1_g000051 Rmu_sc0003500.1_g000013 Rmu_sc0004191.1_g000020 Rmu_sc0004904.1_g000032 Rmu_sc0005325.1_g000008 Rmu_sc0005947.1_g000040 Rmu_sc0006475.1_g000001 Rmu_sc0006522.1_g000019 Rmu_sc0007102.1_g000005 Rmu_sc0007810.1_g000003 Rmu_sc0008339.1_g000025 Rmu_sc0008698.1_g000004 Rmu_sc0009313.1_g000006 Rmu_sc0009850.1_g000006 Rmu_sc0010598.1_g000003 Rmu_sc0011162.1_g000002 Rmu_sc0011824.1_g000004 Rmu_sc0011900.1_g000010 Rmu_sc0012291.1_g000006 Rmu_sc0012619.1_g000003 Rmu_sc0014679.1_g000001 Rmu_sc0019053.1_g000001 Rmu_sc0021462.1_g000003 Rmu_sc0024172.1_g000001 Rmu_sc0024173.1_g000001 Rmu_ssc0000052.1_g000016 Rmu_ssc0000392.1_g000010 Rmu_ssc0000421.1_g000062 Rmu_ssc0000479.1_g000006
rosa_roxburghii	Rroxscaffold_153G00436600 Rroxscaffold_1G00008580 Rroxscaffold_1G00016770 Rroxscaffold_1G00029550 Rroxscaffold_1G00036450 Rroxscaffold_1G00040410 Rroxscaffold_1G00047110 Rroxscaffold_1G00060570 Rroxscaffold_2G00081500 Rroxscaffold_2G00081510 Rroxscaffold_2G00086080 Rroxscaffold_2G00099620 Rroxscaffold_2G00099630 Rroxscaffold_2G00099640 Rroxscaffold_2G00109170 Rroxscaffold_2G00127750 Rroxscaffold_2G00128590 Rroxscaffold_2G00130780 Rroxscaffold_2G00131040 Rroxscaffold_2G00143160 Rroxscaffold_3G00229280 Rroxscaffold_3G00229290 Rroxscaffold_3G00229970 Rroxscaffold_3G00242860 Rroxscaffold_3G00242890 Rroxscaffold_3G00242900 Rroxscaffold_3G00248200 Rroxscaffold_4G00284550 Rroxscaffold_4G00288780 Rroxscaffold_4G00298620 Rroxscaffold_4G00298630 Rroxscaffold_4G00312420 Rroxscaffold_4G00320310 Rroxscaffold_4G00322220 Rroxscaffold_4G00323600 Rroxscaffold_4G00331830 Rroxscaffold_4G00332010 Rroxscaffold_4G00332020 Rroxscaffold_5G00344470 Rroxscaffold_5G00345310 Rroxscaffold_5G00356120 Rroxscaffold_5G00368700 Rroxscaffold_5G00379820 Rroxscaffold_5G00382480 Rroxscaffold_6G00395080 Rroxscaffold_6G00405520 Rroxscaffold_6G00428210 Rroxscaffold_7G00193460
rosa_samantha	Rh7CG413200 Rh7DG284900

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	1 cut(s)	1104
AarI	CACCTGC	1 cut(s)	101
AatII	GACGTC	2 cut(s)	787, 859
Acc36I	ACCTGC	1 cut(s)	101
AccB7I	CCANNNNNTGG	3 cut(s)	959, 1016, 1183
AccBSI	CCGCTC	1 cut(s)	310
AccII	CGCG	8 cut(s)	179, 245, 267, 315, 424, 496, 498, 1358
AccIII	TCCGGA	1 cut(s)	148
AciI	CCGC	6 cut(s)	87, 243, 310, 355, 1138, 1390
AclWI	GGATC	3 cut(s)	175, 414, 1415
AcsI	RAATTY	4 cut(s)	1026, 1262, 1336, 1414
AcyI	GRCGYC	2 cut(s)	784, 856
AdeI	CACNNNGTG	1 cut(s)	17
AfiI	CCNNNNNNNGG	9 cut(s)	357, 379, 533, 959, 1016, 1183, 1242, 1395, 1396
AgsI	TTSAA	9 cut(s)	521, 979, 985, 1005, 1025, 1144, 1154, 1268, 1346
AhdI	GACNNNNNGTC	2 cut(s)	42, 1054
AjnI	CCWGG	3 cut(s)	233, 402, 717
AleI	CACNNNNGTG	1 cut(s)	104
AluBI	AGCT	8 cut(s)	224, 229, 293, 326, 346, 441, 748, 1386
AluI	AGCT	8 cut(s)	224, 229, 293, 326, 346, 441, 748, 1386
Alw26I	GTCTC	1 cut(s)	164
AlwI	GGATC	3 cut(s)	175, 414, 1415
Aor13HI	TCCGGA	1 cut(s)	148
AoxI	GGCC	5 cut(s)	66, 569, 582, 914, 1007
ApeKI	GCWGC	4 cut(s)	745, 776, 848, 1135
ApoI	RAATTY	4 cut(s)	1026, 1262, 1336, 1414
AseI	ATTAAT	1 cut(s)	969
Asp700I	GAANNNNTTC	1 cut(s)	989
AspLEI	GCGC	3 cut(s)	315, 426, 498
AspS9I	GGNCC	2 cut(s)	887, 914
AsuHPI	GGTGA	4 cut(s)	29, 125, 716, 1058
AsuII	TTCGAA	1 cut(s)	137
AvaII	GGWCC	1 cut(s)	887
BbsI	GAAGAC	2 cut(s)	375, 1203
BbvI	GCAGC	4 cut(s)	757, 763, 835, 1147
BccI	CCATC	1 cut(s)	593
BceAI	ACGGC	1 cut(s)	584
BciT130I	CCWGG	3 cut(s)	235, 404, 719
BclI	TGATCA	1 cut(s)	754
BcoDI	GTCTC	1 cut(s)	164
BfaI	CTAG	1 cut(s)	1440
BfmI	CTRYAG	1 cut(s)	102
BfuAI	ACCTGC	1 cut(s)	101
BglII	AGATCT	2 cut(s)	987, 1275
BisI	GCNGC	5 cut(s)	311, 746, 777, 849, 1136
BlpI	GCTNAGC	1 cut(s)	225
BlsI	GCNGC	5 cut(s)	312, 747, 778, 850, 1137
Bme1390I	CCNGG	3 cut(s)	235, 404, 719
Bme18I	GGWCC	1 cut(s)	887
BmeRI	GACNNNNNGTC	2 cut(s)	42, 1054
BmgT120I	GGNCC	2 cut(s)	887, 914
BmiI	GGNNCC	2 cut(s)	889, 1120
BmrFI	CCNGG	3 cut(s)	235, 404, 719
BmsI	GCATC	1 cut(s)	684
BpiI	GAAGAC	2 cut(s)	375, 1203
BplI	GAGNNNNNCTC	2 cut(s)	11, 43
Bpu1102I	GCTNAGC	1 cut(s)	225
Bpu14I	TTCGAA	1 cut(s)	137
BpuEI	CTTGAG	2 cut(s)	194, 965
BsaAI	YACGTR	1 cut(s)	679
BsaHI	GRCGYC	2 cut(s)	784, 856
BsaJI	CCNNGG	3 cut(s)	234, 796, 1430
BsaWI	WCCGGW	1 cut(s)	148
BsaXI	ACNNNNNCTCC	2 cut(s)	1240, 1270
Bsc4I	CCNNNNNNNGG	9 cut(s)	357, 379, 533, 959, 1016, 1183, 1242, 1395, 1396
Bse1I	ACTGG	2 cut(s)	1010, 1059
BseAI	TCCGGA	1 cut(s)	148
BseBI	CCWGG	3 cut(s)	235, 404, 719
BseDI	CCNNGG	3 cut(s)	234, 796, 1430
BseLI	CCNNNNNNNGG	9 cut(s)	357, 379, 533, 959, 1016, 1183, 1242, 1395, 1396
BseMII	CTCAG	3 cut(s)	30, 216, 299
BseNI	ACTGG	2 cut(s)	1010, 1059
BseRI	GAGGAG	2 cut(s)	182, 1416
BseXI	GCAGC	4 cut(s)	757, 763, 835, 1147
BseYI	CCCAGC	1 cut(s)	351
Bsh1236I	CGCG	8 cut(s)	179, 245, 267, 315, 424, 496, 498, 1358
Bsh1285I	CGRYCG	1 cut(s)	319
BshFI	GGCC	5 cut(s)	68, 571, 584, 916, 1009
BsiEI	CGRYCG	1 cut(s)	319
BsiSI	CCGG	1 cut(s)	149
BslFI	GGGAC	2 cut(s)	873, 1258
BslI	CCNNNNNNNGG	9 cut(s)	357, 379, 533, 959, 1016, 1183, 1242, 1395, 1396
BsmAI	GTCTC	1 cut(s)	164
BsmFI	GGGAC	2 cut(s)	873, 1258
BsnI	GGCC	5 cut(s)	68, 571, 584, 916, 1009
Bsp119I	TTCGAA	1 cut(s)	137
Bsp13I	TCCGGA	1 cut(s)	148
Bsp143I	GATC	8 cut(s)	180, 316, 406, 754, 987, 1237, 1275, 1420
Bsp1720I	GCTNAGC	1 cut(s)	225
Bsp68I	TCGCGA	1 cut(s)	179
BspACI	CCGC	6 cut(s)	87, 243, 310, 355, 1138, 1390
BspANI	GGCC	5 cut(s)	68, 571, 584, 916, 1009
BspCNI	CTCAG	3 cut(s)	31, 217, 298
BspEI	TCCGGA	1 cut(s)	148
BspFNI	CGCG	8 cut(s)	179, 245, 267, 315, 424, 496, 498, 1358
BspHI	TCATGA	1 cut(s)	790
BspLI	GGNNCC	2 cut(s)	889, 1120
BspMI	ACCTGC	1 cut(s)	101
BspPI	GGATC	3 cut(s)	175, 414, 1415
BspT104I	TTCGAA	1 cut(s)	137
BsrBI	CCGCTC	1 cut(s)	310
BsrI	ACTGG	2 cut(s)	1010, 1059
BssECI	CCNNGG	3 cut(s)	234, 796, 1430
BssMI	GATC	8 cut(s)	180, 316, 406, 754, 987, 1237, 1275, 1420
BssNI	GRCGYC	2 cut(s)	784, 856
BssT1I	CCWWGG	1 cut(s)	796
Bst2UI	CCWGG	3 cut(s)	235, 404, 719
Bst4CI	ACNGT	2 cut(s)	94, 103
Bst6I	CTCTTC	2 cut(s)	117, 495
BstACI	GRCGYC	2 cut(s)	784, 856
BstBAI	YACGTR	1 cut(s)	679
BstBI	TTCGAA	1 cut(s)	137
BstC8I	GCNNGC	3 cut(s)	70, 74, 231
BstDEI	CTNAG	5 cut(s)	39, 225, 285, 513, 731
BstDSI	CCRYGG	1 cut(s)	1430
BstEII	GGTNACC	1 cut(s)	1046
BstFNI	CGCG	8 cut(s)	179, 245, 267, 315, 424, 496, 498, 1358
BstHHI	GCGC	3 cut(s)	315, 426, 498
BstKTI	GATC	8 cut(s)	183, 319, 409, 757, 990, 1240, 1278, 1423
BstMAI	GTCTC	1 cut(s)	164
BstMBI	GATC	8 cut(s)	180, 316, 406, 754, 987, 1237, 1275, 1420
BstMCI	CGRYCG	1 cut(s)	319
BstMWI	GCNNNNNNNGC	5 cut(s)	230, 290, 307, 352, 703
BstNI	CCWGG	3 cut(s)	235, 404, 719
BstPI	GGTNACC	1 cut(s)	1046
BstSCI	CCNGG	3 cut(s)	233, 402, 717
BstSFI	CTRYAG	1 cut(s)	102
BstUI	CGCG	8 cut(s)	179, 245, 267, 315, 424, 496, 498, 1358
BstV1I	GCAGC	4 cut(s)	757, 763, 835, 1147
BstV2I	GAAGAC	2 cut(s)	375, 1203
BstX2I	RGATCY	2 cut(s)	987, 1275
BstXI	CCANNNNNNTGG	1 cut(s)	679
BstYI	RGATCY	2 cut(s)	987, 1275
BsuRI	GGCC	5 cut(s)	68, 571, 584, 916, 1009
BtgI	CCRYGG	1 cut(s)	1430
BtsIMutI	CAGTG	3 cut(s)	90, 99, 1021
BtuMI	TCGCGA	1 cut(s)	179
BveI	ACCTGC	1 cut(s)	101
Cac8I	GCNNGC	3 cut(s)	70, 74, 231
CciI	TCATGA	1 cut(s)	790
CfoI	GCGC	3 cut(s)	315, 426, 498
Cfr13I	GGNCC	2 cut(s)	887, 914
CseI	GACGC	2 cut(s)	40, 1364
CviAII	CATG	9 cut(s)	590, 698, 707, 791, 866, 911, 1204, 1216, 1406
DdeI	CTNAG	5 cut(s)	39, 225, 285, 513, 731
DpnI	GATC	8 cut(s)	182, 318, 408, 756, 989, 1239, 1277, 1422
DpnII	GATC	8 cut(s)	180, 316, 406, 754, 987, 1237, 1275, 1420
DraIII	CACNNNGTG	1 cut(s)	17
DriI	GACNNNNNGTC	2 cut(s)	42, 1054
Eam1104I	CTCTTC	2 cut(s)	117, 495
Eam1105I	GACNNNNNGTC	2 cut(s)	42, 1054
EarI	CTCTTC	2 cut(s)	117, 495
EciI	GGCGGA	1 cut(s)	76
Eco130I	CCWWGG	1 cut(s)	796
Eco147I	AGGCCT	1 cut(s)	584
Eco47I	GGWCC	1 cut(s)	887
Eco91I	GGTNACC	1 cut(s)	1046
EcoO65I	GGTNACC	1 cut(s)	1046
EcoRII	CCWGG	3 cut(s)	233, 402, 717
EcoT14I	CCWWGG	1 cut(s)	796
EcoT22I	ATGCAT	1 cut(s)	699
ErhI	CCWWGG	1 cut(s)	796
FaeI	CATG	9 cut(s)	593, 701, 710, 794, 869, 914, 1207, 1219, 1409
FalI	AAGNNNNNCTT	4 cut(s)	213, 245, 1224, 1256
FaqI	GGGAC	2 cut(s)	873, 1258
FatI	CATG	9 cut(s)	589, 697, 706, 790, 865, 910, 1203, 1215, 1405
FauI	CCCGC	1 cut(s)	1397
FauNDI	CATATG	1 cut(s)	1131
FbaI	TGATCA	1 cut(s)	754
Fnu4HI	GCNGC	5 cut(s)	311, 746, 777, 849, 1136
Fsp4HI	GCNGC	5 cut(s)	311, 746, 777, 849, 1136
FspBI	CTAG	1 cut(s)	1440
GlaI	GCGC	3 cut(s)	314, 425, 497
GluI	GCNGC	5 cut(s)	311, 746, 777, 849, 1136
GsaI	CCCAGC	1 cut(s)	355
HaeIII	GGCC	5 cut(s)	68, 571, 584, 916, 1009
HapII	CCGG	1 cut(s)	149
HgaI	GACGC	2 cut(s)	40, 1364
HhaI	GCGC	3 cut(s)	315, 426, 498
Hin1I	GRCGYC	2 cut(s)	784, 856
Hin1II	CATG	9 cut(s)	593, 701, 710, 794, 869, 914, 1207, 1219, 1409
Hin6I	GCGC	3 cut(s)	313, 424, 496
HinP1I	GCGC	3 cut(s)	313, 424, 496
HincII	GTYRAC	4 cut(s)	6, 97, 605, 1289
HindII	GTYRAC	4 cut(s)	6, 97, 605, 1289
HinfI	GANTC	7 cut(s)	22, 202, 253, 258, 434, 563, 1041
HpaII	CCGG	1 cut(s)	149
HphI	GGTGA	4 cut(s)	29, 125, 716, 1058
Hpy166II	GTNNAC	6 cut(s)	6, 97, 461, 605, 724, 1289
Hpy188I	TCNGA	5 cut(s)	48, 288, 640, 693, 1195
Hpy8I	GTNNAC	6 cut(s)	6, 97, 461, 605, 724, 1289
Hpy99I	CGWCG	1 cut(s)	1358
HpyAV	CCTTC	6 cut(s)	146, 172, 241, 866, 1031, 1333
HpyCH4III	ACNGT	2 cut(s)	94, 103
HpyCH4IV	ACGT	4 cut(s)	678, 784, 856, 1250
HpyCH4V	TGCA	4 cut(s)	589, 697, 869, 1135
HpyF10VI	GCNNNNNNNGC	5 cut(s)	230, 290, 307, 352, 703
HpyF3I	CTNAG	5 cut(s)	39, 225, 285, 513, 731
HpySE526I	ACGT	4 cut(s)	678, 784, 856, 1250
Hsp92I	GRCGYC	2 cut(s)	784, 856
Hsp92II	CATG	9 cut(s)	593, 701, 710, 794, 869, 914, 1207, 1219, 1409
HspAI	GCGC	3 cut(s)	313, 424, 496
Kpn2I	TCCGGA	1 cut(s)	148
Ksp22I	TGATCA	1 cut(s)	754
Kzo9I	GATC	8 cut(s)	180, 316, 406, 754, 987, 1237, 1275, 1420
LmnI	GCTCC	3 cut(s)	155, 307, 1391
Lsp1109I	GCAGC	4 cut(s)	757, 763, 835, 1147
LweI	GCATC	1 cut(s)	684
MaeI	CTAG	1 cut(s)	1440
MaeII	ACGT	4 cut(s)	678, 784, 856, 1250
MaeIII	GTNAC	3 cut(s)	564, 734, 1046
MalI	GATC	8 cut(s)	182, 318, 408, 756, 989, 1239, 1277, 1422
MbiI	CCGCTC	1 cut(s)	310
MboI	GATC	8 cut(s)	180, 316, 406, 754, 987, 1237, 1275, 1420
MboII	GAAGA	9 cut(s)	134, 226, 380, 483, 512, 608, 982, 997, 1208
MfeI	CAATTG	1 cut(s)	1268
MflI	RGATCY	2 cut(s)	987, 1275
MlyI	GAGTC	2 cut(s)	252, 572
Mph1103I	ATGCAT	1 cut(s)	699
MroI	TCCGGA	1 cut(s)	148
MroXI	GAANNNNTTC	1 cut(s)	989
MseI	TTAA	9 cut(s)	81, 687, 762, 822, 833, 894, 905, 969, 1109
MslI	CAYNNNNRTG	1 cut(s)	104
MspA1I	CMGCKG	3 cut(s)	355, 748, 1138
MspI	CCGG	1 cut(s)	149
MspR9I	CCNGG	3 cut(s)	235, 404, 719
MunI	CAATTG	1 cut(s)	1268
MvaI	CCWGG	3 cut(s)	235, 404, 719
MvnI	CGCG	8 cut(s)	179, 245, 267, 315, 424, 496, 498, 1358
MwoI	GCNNNNNNNGC	5 cut(s)	230, 290, 307, 352, 703
NdeI	CATATG	1 cut(s)	1131
NdeII	GATC	8 cut(s)	180, 316, 406, 754, 987, 1237, 1275, 1420
NlaIII	CATG	9 cut(s)	593, 701, 710, 794, 869, 914, 1207, 1219, 1409
NlaIV	GGNNCC	2 cut(s)	889, 1120
NmuCI	GTSAC	2 cut(s)	564, 1046
NruI	TCGCGA	1 cut(s)	179
NsiI	ATGCAT	1 cut(s)	699
NspV	TTCGAA	1 cut(s)	137
OliI	CACNNNNGTG	1 cut(s)	104
PagI	TCATGA	1 cut(s)	790
PaqCI	CACCTGC	1 cut(s)	101
PceI	AGGCCT	1 cut(s)	584
PdmI	GAANNNNTTC	1 cut(s)	989
PfeI	GAWTC	5 cut(s)	22, 202, 253, 434, 1041
PflFI	GACNNNGTC	1 cut(s)	1249
PflMI	CCANNNNNTGG	3 cut(s)	959, 1016, 1183
PfoI	TCCNGGA	1 cut(s)	402
PkrI	GCNGC	5 cut(s)	312, 747, 778, 850, 1137
Ple19I	CGATCG	1 cut(s)	319
PleI	GAGTC	2 cut(s)	252, 571
PpsI	GAGTC	2 cut(s)	252, 571
Ppu21I	YACGTR	1 cut(s)	679
PshBI	ATTAAT	1 cut(s)	969
PsiI	TTATAA	1 cut(s)	1104
Psp6I	CCWGG	3 cut(s)	233, 402, 717
PspEI	GGTNACC	1 cut(s)	1046
PspFI	CCCAGC	1 cut(s)	351
PspGI	CCWGG	3 cut(s)	233, 402, 717
PspN4I	GGNNCC	2 cut(s)	889, 1120
PspPI	GGNCC	2 cut(s)	887, 914
PsuI	RGATCY	2 cut(s)	987, 1275
PsyI	GACNNNGTC	1 cut(s)	1249
PvuI	CGATCG	1 cut(s)	319
PvuII	CAGCTG	1 cut(s)	748
RruI	TCGCGA	1 cut(s)	179
RseI	CAYNNNNRTG	1 cut(s)	104
SaqAI	TTAA	9 cut(s)	81, 687, 762, 822, 833, 894, 905, 969, 1109
SatI	GCNGC	5 cut(s)	311, 746, 777, 849, 1136
Sau3AI	GATC	8 cut(s)	180, 316, 406, 754, 987, 1237, 1275, 1420
Sau96I	GGNCC	2 cut(s)	887, 914
SchI	GAGTC	2 cut(s)	252, 572
ScrFI	CCNGG	3 cut(s)	235, 404, 719
SfaNI	GCATC	1 cut(s)	684
SfcI	CTRYAG	1 cut(s)	102
SfuI	TTCGAA	1 cut(s)	137
SinI	GGWCC	1 cut(s)	887
SmiMI	CAYNNNNRTG	1 cut(s)	104
SmlI	CTYRAG	2 cut(s)	209, 944
SmoI	CTYRAG	2 cut(s)	209, 944
SseBI	AGGCCT	1 cut(s)	584
SsiI	CCGC	6 cut(s)	87, 243, 310, 355, 1138, 1390
SspI	AATATT	1 cut(s)	1316
SspMI	CTAG	1 cut(s)	1440
StuI	AGGCCT	1 cut(s)	584
StyD4I	CCNGG	3 cut(s)	233, 402, 717
StyI	CCWWGG	1 cut(s)	796
TaaI	ACNGT	2 cut(s)	94, 103
TaiI	ACGT	4 cut(s)	681, 787, 859, 1253
TaqI	TCGA	8 cut(s)	29, 137, 165, 198, 256, 319, 340, 1353
TauI	GCSGC	1 cut(s)	313
TfiI	GAWTC	5 cut(s)	22, 202, 253, 434, 1041
Tru1I	TTAA	9 cut(s)	81, 687, 762, 822, 833, 894, 905, 969, 1109
Tru9I	TTAA	9 cut(s)	81, 687, 762, 822, 833, 894, 905, 969, 1109
TscAI	CASTG	3 cut(s)	97, 106, 1021
TseFI	GTSAC	2 cut(s)	564, 1046
TseI	GCWGC	4 cut(s)	745, 776, 848, 1135
Tsp45I	GTSAC	2 cut(s)	564, 1046
TspDTI	ATGAA	5 cut(s)	233, 843, 982, 1101, 1394
TspGWI	ACGGA	1 cut(s)	1419
TspRI	CASTG	3 cut(s)	97, 106, 1021
Tth111I	GACNNNGTC	1 cut(s)	1249
Van91I	CCANNNNNTGG	3 cut(s)	959, 1016, 1183
VpaK11BI	GGWCC	1 cut(s)	887
VspI	ATTAAT	1 cut(s)	969
XapI	RAATTY	4 cut(s)	1026, 1262, 1336, 1414
XbaI	TCTAGA	1 cut(s)	1439
XmnI	GAANNNNTTC	1 cut(s)	989
XspI	CTAG	1 cut(s)	1440
ZraI	GACGTC	2 cut(s)	785, 857
Zsp2I	ATGCAT	1 cut(s)	699

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.