FvH4_5g15303

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
fragaria_vesca
Fvb5
OG0000314
Physical Location & Seq
Forward (+)
8665023 .. 8665920
898 bp
Loading structure...
UTR
Exon/CDS
Intron
FvH4_5g15303.t1

Sequence Viewer

Length: 453 bp
ATGCCGGACAGTCCACTTCGCCGATTCAGCTGGAATGATCCAGGACGACCTAGTAGGCGAGCCTTATATCAACAGAAATCTCTGGATGTCTATTTTCCAGAGGATTTTACGGTTCATCATTCCGACATTCTTAGAGGGAGTTATGGCAGTTTGAATGCAGACAGCGAAGTACACTCCATGATTATTAAGAAGATGGTTCGCCATCGCCAAGAGCTCAAGCTAAGGGCAATTTTGAATCCAGTCAAAGTGAACGTCTACTCAAGGTACATCCCGTCGAGCTACATCTATTCGAGGTACATCCCTTCGAGGTCAGACGATTCCTTTCCAAATACATCCACTCGAGCTACATCTCTTCGAAGACAGTATCTACTCAAGATGCATGCATGGTACCATGTCTTCAAGAGCAGAGCAAGCGAGGCGCAAGTTTTTTCAATGCTACGGTACCTATGTTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

151

Amino Acids

17.78

Weight (kDa)

10.08

Isoelectric Point (pI)

69.56

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
Loading...
Style Settings
Image
Tree File
Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0000314)

Species Orthologous Gene IDs
fragaria_vesca FvH4_1g02272 FvH4_1g22661 FvH4_2g10242 FvH4_2g34051 FvH4_3g19221 FvH4_3g29651 FvH4_3g30891 FvH4_4g11061 FvH4_5g09250 FvH4_5g15302 FvH4_5g15303 FvH4_5g15304 FvH4_5g28521 FvH4_6g23591 FvH4_7g05710 FvH4_7g19520
pyrus_communis pycom07g06330
rosa_chinensis RchiOBHm_Chr5g0027301 RchiOBHm_Chr6g0251451 RchiOBHm_Chr6g0274861
rosa_laevigata RLG00000007850
rosa_multiflora Rmu_co8230721.1_g000001 Rmu_sc0000271.1_g000027 Rmu_sc0000303.1_g000024 Rmu_sc0000368.1_g000024 Rmu_sc0000621.1_g000037 Rmu_sc0000693.1_g000081 Rmu_sc0001229.1_g000006 Rmu_sc0001373.1_g000003 Rmu_sc0001459.1_g000001 Rmu_sc0001744.1_g000002 Rmu_sc0001909.1_g000002 Rmu_sc0002053.1_g000012 Rmu_sc0002060.1_g000015 Rmu_sc0002119.1_g000036 Rmu_sc0002177.1_g000007 Rmu_sc0002822.1_g000024 Rmu_sc0002965.1_g000015 Rmu_sc0003363.1_g000051 Rmu_sc0003500.1_g000013 Rmu_sc0004191.1_g000020 Rmu_sc0004904.1_g000032 Rmu_sc0005325.1_g000008 Rmu_sc0005947.1_g000040 Rmu_sc0006475.1_g000001 Rmu_sc0006522.1_g000019 Rmu_sc0007102.1_g000005 Rmu_sc0007810.1_g000003 Rmu_sc0008339.1_g000025 Rmu_sc0008698.1_g000004 Rmu_sc0009313.1_g000006 Rmu_sc0009850.1_g000006 Rmu_sc0010598.1_g000003 Rmu_sc0011162.1_g000002 Rmu_sc0011824.1_g000004 Rmu_sc0011900.1_g000010 Rmu_sc0012291.1_g000006 Rmu_sc0012619.1_g000003 Rmu_sc0014679.1_g000001 Rmu_sc0019053.1_g000001 Rmu_sc0021462.1_g000003 Rmu_sc0024172.1_g000001 Rmu_sc0024173.1_g000001 Rmu_ssc0000052.1_g000016 Rmu_ssc0000392.1_g000010 Rmu_ssc0000421.1_g000062 Rmu_ssc0000479.1_g000006
rosa_roxburghii Rroxscaffold_153G00436600 Rroxscaffold_1G00008580 Rroxscaffold_1G00016770 Rroxscaffold_1G00029550 Rroxscaffold_1G00036450 Rroxscaffold_1G00040410 Rroxscaffold_1G00047110 Rroxscaffold_1G00060570 Rroxscaffold_2G00081500 Rroxscaffold_2G00081510 Rroxscaffold_2G00086080 Rroxscaffold_2G00099620 Rroxscaffold_2G00099630 Rroxscaffold_2G00099640 Rroxscaffold_2G00109170 Rroxscaffold_2G00127750 Rroxscaffold_2G00128590 Rroxscaffold_2G00130780 Rroxscaffold_2G00131040 Rroxscaffold_2G00143160 Rroxscaffold_3G00229280 Rroxscaffold_3G00229290 Rroxscaffold_3G00229970 Rroxscaffold_3G00242860 Rroxscaffold_3G00242890 Rroxscaffold_3G00242900 Rroxscaffold_3G00248200 Rroxscaffold_4G00284550 Rroxscaffold_4G00288780 Rroxscaffold_4G00298620 Rroxscaffold_4G00298630 Rroxscaffold_4G00312420 Rroxscaffold_4G00320310 Rroxscaffold_4G00322220 Rroxscaffold_4G00323600 Rroxscaffold_4G00331830 Rroxscaffold_4G00332010 Rroxscaffold_4G00332020 Rroxscaffold_5G00344470 Rroxscaffold_5G00345310 Rroxscaffold_5G00356120 Rroxscaffold_5G00368700 Rroxscaffold_5G00379820 Rroxscaffold_5G00382480 Rroxscaffold_6G00395080 Rroxscaffold_6G00405520 Rroxscaffold_6G00428210 Rroxscaffold_7G00193460
rosa_samantha Rh7CG413200 Rh7DG284900

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc65I GGTACC 2 cut(s) 387, 441
AccB1I GGYRCC 2 cut(s) 387, 441
AccI GTMKAC 1 cut(s) 255
AclWI GGATC 1 cut(s) 32
AfaI GTAC 5 cut(s) 171, 266, 296, 389, 443
AgsI TTSAA 4 cut(s) 154, 235, 400, 432
AjnI CCWGG 1 cut(s) 40
AluBI AGCT 5 cut(s) 30, 214, 220, 279, 344
AluI AGCT 5 cut(s) 30, 214, 220, 279, 344
Alw21I GWGCWC 1 cut(s) 216
AlwI GGATC 1 cut(s) 32
Ama87I CYCGRG 1 cut(s) 339
ArsI GACNNNNNNTTYG 2 cut(s) 237, 269
Asp718I GGTACC 2 cut(s) 387, 441
AspLEI GCGC 1 cut(s) 421
AsuII TTCGAA 1 cut(s) 355
AvaI CYCGRG 1 cut(s) 339
BaeI ACNNNNGTAYC 1 cut(s) 433
BanI GGYRCC 2 cut(s) 387, 441
BanII GRGCYC 1 cut(s) 216
BarI GAAGNNNNNNTAC 2 cut(s) 380, 412
BbsI GAAGAC 2 cut(s) 364, 388
Bbv12I GWGCWC 1 cut(s) 216
BccI CCATC 2 cut(s) 187, 210
BciT130I CCWGG 1 cut(s) 42
BfaI CTAG 1 cut(s) 51
Bme1390I CCNGG 1 cut(s) 42
BmeT110I CYCGRG 1 cut(s) 339
BmiI GGNNCC 2 cut(s) 389, 443
BmrFI CCNGG 1 cut(s) 42
BmsI GCATC 1 cut(s) 366
BpiI GAAGAC 2 cut(s) 364, 388
Bpu10I CCTNAGC 1 cut(s) 221
Bpu14I TTCGAA 1 cut(s) 355
BpuEI CTTGAG 3 cut(s) 200, 244, 356
Bse1I ACTGG 1 cut(s) 239
BseBI CCWGG 1 cut(s) 42
BseGI GGATG 4 cut(s) 91, 267, 297, 332
BseNI ACTGG 1 cut(s) 239
BshNI GGYRCC 2 cut(s) 387, 441
BsiHKAI GWGCWC 1 cut(s) 216
BsiHKCI CYCGRG 1 cut(s) 339
BsiSI CCGG 1 cut(s) 5
BsmI GAATGC 1 cut(s) 160
BsoBI CYCGRG 1 cut(s) 339
Bsp119I TTCGAA 1 cut(s) 355
Bsp1286I GDGCHC 1 cut(s) 216
Bsp143I GATC 1 cut(s) 37
BspLI GGNNCC 2 cut(s) 389, 443
BspPI GGATC 1 cut(s) 32
BspT104I TTCGAA 1 cut(s) 355
BspT107I GGYRCC 2 cut(s) 387, 441
BsrI ACTGG 1 cut(s) 239
BssMI GATC 1 cut(s) 37
Bst2UI CCWGG 1 cut(s) 42
Bst4CI ACNGT 4 cut(s) 11, 112, 363, 441
Bst6I CTCTTC 1 cut(s) 357
BstBI TTCGAA 1 cut(s) 355
BstC8I GCNNGC 3 cut(s) 60, 381, 412
BstDEI CTNAG 2 cut(s) 131, 221
BstF5I GGATG 4 cut(s) 91, 267, 297, 332
BstHHI GCGC 1 cut(s) 421
BstKTI GATC 1 cut(s) 40
BstMBI GATC 1 cut(s) 37
BstMWI GCNNNNNNNGC 3 cut(s) 27, 411, 416
BstNI CCWGG 1 cut(s) 42
BstNSI RCATGY 1 cut(s) 383
BstSCI CCNGG 1 cut(s) 40
BstV2I GAAGAC 2 cut(s) 364, 388
BtgZI GCGATG 1 cut(s) 188
BtsCI GGATG 4 cut(s) 91, 267, 297, 332
Cac8I GCNNGC 3 cut(s) 60, 381, 412
CfoI GCGC 1 cut(s) 421
Csp6I GTAC 5 cut(s) 170, 265, 295, 388, 442
CviAII CATG 4 cut(s) 178, 380, 384, 392
CviJI RGCY 6 cut(s) 30, 62, 214, 220, 279, 344
CviKI_1 RGCY 6 cut(s) 30, 62, 214, 220, 279, 344
CviQI GTAC 5 cut(s) 170, 265, 295, 388, 442
DdeI CTNAG 2 cut(s) 131, 221
DpnI GATC 1 cut(s) 39
DpnII GATC 1 cut(s) 37
Eam1104I CTCTTC 1 cut(s) 357
EarI CTCTTC 1 cut(s) 357
Ecl136II GAGCTC 1 cut(s) 214
Eco24I GRGCYC 1 cut(s) 216
Eco53kI GAGCTC 1 cut(s) 214
Eco88I CYCGRG 1 cut(s) 339
EcoICRI GAGCTC 1 cut(s) 214
EcoRII CCWGG 1 cut(s) 40
EcoT22I ATGCAT 2 cut(s) 381, 385
EcoT38I GRGCYC 1 cut(s) 216
FaeI CATG 4 cut(s) 181, 383, 387, 395
FaiI YATR 7 cut(s) 67, 144, 179, 381, 385, 393, 448
FatI CATG 4 cut(s) 177, 379, 383, 391
FblI GTMKAC 1 cut(s) 255
FokI GGATG 4 cut(s) 98, 254, 284, 319
FriOI GRGCYC 1 cut(s) 216
FspBI CTAG 1 cut(s) 51
GlaI GCGC 1 cut(s) 420
HapII CCGG 1 cut(s) 5
HhaI GCGC 1 cut(s) 421
Hin1II CATG 4 cut(s) 181, 383, 387, 395
Hin6I GCGC 1 cut(s) 419
HinP1I GCGC 1 cut(s) 419
HinfI GANTC 3 cut(s) 24, 235, 317
HpaII CCGG 1 cut(s) 5
Hpy166II GTNNAC 4 cut(s) 14, 172, 250, 256
Hpy188I TCNGA 2 cut(s) 124, 313
Hpy188III TCNNGA 4 cut(s) 83, 98, 373, 400
Hpy8I GTNNAC 4 cut(s) 14, 172, 250, 256
Hpy99I CGWCG 1 cut(s) 277
HpyAV CCTTC 1 cut(s) 312
HpyCH4III ACNGT 4 cut(s) 11, 112, 363, 441
HpyCH4IV ACGT 1 cut(s) 252
HpyCH4V TGCA 3 cut(s) 158, 379, 383
HpyF10VI GCNNNNNNNGC 3 cut(s) 27, 411, 416
HpyF3I CTNAG 2 cut(s) 131, 221
HpySE526I ACGT 1 cut(s) 252
Hsp92II CATG 4 cut(s) 181, 383, 387, 395
HspAI GCGC 1 cut(s) 419
KpnI GGTACC 2 cut(s) 391, 445
Kzo9I GATC 1 cut(s) 37
LpnPI CCDG 7 cut(s) 16, 18, 27, 54, 68, 111, 252
LweI GCATC 1 cut(s) 366
MaeI CTAG 1 cut(s) 51
MaeII ACGT 1 cut(s) 252
MalI GATC 1 cut(s) 39
MboI GATC 1 cut(s) 37
MboII GAAGA 4 cut(s) 202, 344, 369, 388
MhlI GDGCHC 1 cut(s) 216
MluCI AATT 1 cut(s) 228
MmeI TCCRAC 1 cut(s) 147
MnlI CCTC 5 cut(s) 94, 128, 285, 300, 409
Mph1103I ATGCAT 2 cut(s) 381, 385
MseI TTAA 2 cut(s) 186, 451
MspA1I CMGCKG 1 cut(s) 30
MspI CCGG 1 cut(s) 5
MspR9I CCNGG 1 cut(s) 42
Mva1269I GAATGC 1 cut(s) 160
MvaI CCWGG 1 cut(s) 42
MwoI GCNNNNNNNGC 3 cut(s) 27, 411, 416
NdeII GATC 1 cut(s) 37
NlaIII CATG 4 cut(s) 181, 383, 387, 395
NlaIV GGNNCC 2 cut(s) 389, 443
NsiI ATGCAT 2 cut(s) 381, 385
NspI RCATGY 1 cut(s) 383
NspV TTCGAA 1 cut(s) 355
PaeI GCATGC 1 cut(s) 383
PaeR7I CTCGAG 1 cut(s) 339
PctI GAATGC 1 cut(s) 160
PfeI GAWTC 3 cut(s) 24, 235, 317
PfoI TCCNGGA 1 cut(s) 40
Psp124BI GAGCTC 1 cut(s) 216
Psp6I CCWGG 1 cut(s) 40
PspGI CCWGG 1 cut(s) 40
PspN4I GGNNCC 2 cut(s) 389, 443
PspXI VCTCGAGB 1 cut(s) 339
PvuII CAGCTG 1 cut(s) 30
RsaI GTAC 5 cut(s) 171, 266, 296, 389, 443
RsaNI GTAC 5 cut(s) 170, 265, 295, 388, 442
SacI GAGCTC 1 cut(s) 216
SaqAI TTAA 2 cut(s) 186, 451
Sau3AI GATC 1 cut(s) 37
ScrFI CCNGG 1 cut(s) 42
SduI GDGCHC 1 cut(s) 216
SfaNI GCATC 1 cut(s) 366
Sfr274I CTCGAG 1 cut(s) 339
SfuI TTCGAA 1 cut(s) 355
SlaI CTCGAG 1 cut(s) 339
SmlI CTYRAG 4 cut(s) 215, 259, 339, 371
SmoI CTYRAG 4 cut(s) 215, 259, 339, 371
SphI GCATGC 1 cut(s) 383
Sse9I AATT 1 cut(s) 228
SspMI CTAG 1 cut(s) 51
SstI GAGCTC 1 cut(s) 216
StyD4I CCNGG 1 cut(s) 40
TaaI ACNGT 4 cut(s) 11, 112, 363, 441
TaiI ACGT 1 cut(s) 255
TaqI TCGA 5 cut(s) 275, 290, 305, 340, 355
TasI AATT 1 cut(s) 228
TatI WGTACW 1 cut(s) 169
TfiI GAWTC 3 cut(s) 24, 235, 317
Tru1I TTAA 2 cut(s) 186, 451
Tru9I TTAA 2 cut(s) 186, 451
TspDTI ATGAA 1 cut(s) 104
XceI RCATGY 1 cut(s) 383
XhoI CTCGAG 1 cut(s) 339
XmiI GTMKAC 1 cut(s) 255
XspI CTAG 1 cut(s) 51
Zsp2I ATGCAT 2 cut(s) 381, 385
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.