Basic Information

Type: gene

Biological Identity

Species

rosa_roxburghii

Chromosome

GWHEROQ00000002

Orthogroup ID

OG0000314

Physical Location & Seq

Genomic Coordinates Forward (+)

67572747 .. 67587787

Gene Structure 15041 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Rroxscaffold_2G00131040.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 723 bp

ATGATTTCGTTCGAGAGGCTCGAGTTGGGGGCACAACAAGCAAAAGGCGAATTGGAACGTCAAGAACCTGCTCGCAAAGAGGTCGTTTTTGAGACTAACTTGCCTATAAGTGGCAATCAACCTAAGGGTCTCATCTGGCCAAGCGGTGGCTTTGATATATGTGGAGGGCACATCTACAACCCACGTTGCATGAATGGCCAGAACAATTATTCTAGTGGCCAAGTTGTCCTTCGCAACTGTAAATTTGAGTACCATCAATACAAGTTAACTCTTGTTTACAATTATCCAACAAGTGAAGCTCTTGATGTGGAGAATTCATACCAGCAAGTGGTTGTCTATAATGGCCAATACGTGGCTAATCCCGAAGACACCATGTTCTATGACATGGTAGTTGGCGACAAAGCCGATCTTGGAACATCTTCATCTCCAAAACTCCCTCACATTCTTGGACGGATCATGGGCCTAGAATCTAGATTGGGGCCCAATATGGGCAGCTTTGGTCGATGTAGTGACCGGTATGAGGGTATAGGATGCTCTCATCGGTGGATGATGGGCTACAATACGATTCCAAGGTTAGCATTAAAGAAACAATGGTCATCATGCTTACCCATCGATCTTCCACATTGGCCTGGGCGGGAAGAAATGCAAGCCAACAACCTTCCACAATTGCACTCTTCACAAGAGTCTCGTGTCCTAACAAGTTCGTTGTTTGAGGCATTGTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003676 GO:0003723 GO:0003824 GO:0004652 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005829 GO:0006139 GO:0006276 GO:0006378 GO:0006396 GO:0006397 GO:0006725 GO:0006807 GO:0008150 GO:0008152 GO:0009451 GO:0009987 GO:0010467 GO:0016070 GO:0016071 GO:0016740 GO:0016772 GO:0016779 GO:0031123 GO:0031124 GO:0034641 GO:0043170 GO:0043412 GO:0043631 GO:0044237 GO:0044238 GO:0044424 GO:0044444 GO:0044464 GO:0046483 GO:0070566 GO:0071704 GO:0090304 GO:0097159 GO:1901360 GO:1901363

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

PolyA_pol PolyA_pol_RNAbd

Protein Analysis

240

Amino Acids

27.09

Weight (kDa)

6.08

Isoelectric Point (pI)

42.34

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0000314)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_1g02272 FvH4_1g22661 FvH4_2g10242 FvH4_2g34051 FvH4_3g19221 FvH4_3g29651 FvH4_3g30891 FvH4_4g11061 FvH4_5g09250 FvH4_5g15302 FvH4_5g15303 FvH4_5g15304 FvH4_5g28521 FvH4_6g23591 FvH4_7g05710 FvH4_7g19520
pyrus_communis	pycom07g06330
rosa_chinensis	RchiOBHm_Chr5g0027301 RchiOBHm_Chr6g0251451 RchiOBHm_Chr6g0274861
rosa_laevigata	RLG00000007850
rosa_multiflora	Rmu_co8230721.1_g000001 Rmu_sc0000271.1_g000027 Rmu_sc0000303.1_g000024 Rmu_sc0000368.1_g000024 Rmu_sc0000621.1_g000037 Rmu_sc0000693.1_g000081 Rmu_sc0001229.1_g000006 Rmu_sc0001373.1_g000003 Rmu_sc0001459.1_g000001 Rmu_sc0001744.1_g000002 Rmu_sc0001909.1_g000002 Rmu_sc0002053.1_g000012 Rmu_sc0002060.1_g000015 Rmu_sc0002119.1_g000036 Rmu_sc0002177.1_g000007 Rmu_sc0002822.1_g000024 Rmu_sc0002965.1_g000015 Rmu_sc0003363.1_g000051 Rmu_sc0003500.1_g000013 Rmu_sc0004191.1_g000020 Rmu_sc0004904.1_g000032 Rmu_sc0005325.1_g000008 Rmu_sc0005947.1_g000040 Rmu_sc0006475.1_g000001 Rmu_sc0006522.1_g000019 Rmu_sc0007102.1_g000005 Rmu_sc0007810.1_g000003 Rmu_sc0008339.1_g000025 Rmu_sc0008698.1_g000004 Rmu_sc0009313.1_g000006 Rmu_sc0009850.1_g000006 Rmu_sc0010598.1_g000003 Rmu_sc0011162.1_g000002 Rmu_sc0011824.1_g000004 Rmu_sc0011900.1_g000010 Rmu_sc0012291.1_g000006 Rmu_sc0012619.1_g000003 Rmu_sc0014679.1_g000001 Rmu_sc0019053.1_g000001 Rmu_sc0021462.1_g000003 Rmu_sc0024172.1_g000001 Rmu_sc0024173.1_g000001 Rmu_ssc0000052.1_g000016 Rmu_ssc0000392.1_g000010 Rmu_ssc0000421.1_g000062 Rmu_ssc0000479.1_g000006
rosa_roxburghii	Rroxscaffold_153G00436600 Rroxscaffold_1G00008580 Rroxscaffold_1G00016770 Rroxscaffold_1G00029550 Rroxscaffold_1G00036450 Rroxscaffold_1G00040410 Rroxscaffold_1G00047110 Rroxscaffold_1G00060570 Rroxscaffold_2G00081500 Rroxscaffold_2G00081510 Rroxscaffold_2G00086080 Rroxscaffold_2G00099620 Rroxscaffold_2G00099630 Rroxscaffold_2G00099640 Rroxscaffold_2G00109170 Rroxscaffold_2G00127750 Rroxscaffold_2G00128590 Rroxscaffold_2G00130780 Rroxscaffold_2G00131040 Rroxscaffold_2G00143160 Rroxscaffold_3G00229280 Rroxscaffold_3G00229290 Rroxscaffold_3G00229970 Rroxscaffold_3G00242860 Rroxscaffold_3G00242890 Rroxscaffold_3G00242900 Rroxscaffold_3G00248200 Rroxscaffold_4G00284550 Rroxscaffold_4G00288780 Rroxscaffold_4G00298620 Rroxscaffold_4G00298630 Rroxscaffold_4G00312420 Rroxscaffold_4G00320310 Rroxscaffold_4G00322220 Rroxscaffold_4G00323600 Rroxscaffold_4G00331830 Rroxscaffold_4G00332010 Rroxscaffold_4G00332020 Rroxscaffold_5G00344470 Rroxscaffold_5G00345310 Rroxscaffold_5G00356120 Rroxscaffold_5G00368700 Rroxscaffold_5G00379820 Rroxscaffold_5G00382480 Rroxscaffold_6G00395080 Rroxscaffold_6G00405520 Rroxscaffold_6G00428210 Rroxscaffold_7G00193460
rosa_samantha	Rh7CG413200 Rh7DG284900

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc36I	ACCTGC	1 cut(s)	76
AccB7I	CCANNNNNTGG	3 cut(s)	146, 328, 352
AciI	CCGC	2 cut(s)	144, 634
AclWI	GGATC	1 cut(s)	461
AcoI	YGGCCR	4 cut(s)	137, 196, 217, 343
AcsI	RAATTY	2 cut(s)	242, 313
AfaI	GTAC	1 cut(s)	251
AfiI	CCNNNNNNNGG	6 cut(s)	110, 146, 328, 352, 488, 520
AgeI	ACCGGT	1 cut(s)	513
AjnI	CCWGG	1 cut(s)	628
AjuI	GAANNNNNNNTTGG	2 cut(s)	213, 245
AluBI	AGCT	2 cut(s)	299, 495
AluI	AGCT	2 cut(s)	299, 495
Alw26I	GTCTC	3 cut(s)	86, 134, 690
AlwI	GGATC	1 cut(s)	461
Ama87I	CYCGRG	1 cut(s)	20
AoxI	GGCC	7 cut(s)	137, 196, 217, 343, 460, 479, 626
ApaI	GGGCCC	1 cut(s)	483
ApeKI	GCWGC	1 cut(s)	492
ApoI	RAATTY	2 cut(s)	242, 313
AsiGI	ACCGGT	1 cut(s)	513
Asp700I	GAANNNNTTC	1 cut(s)	418
AspS9I	GGNCC	3 cut(s)	460, 479, 480
AvaI	CYCGRG	1 cut(s)	20
AxyI	CCTNAGG	1 cut(s)	123
BaeGI	GKGCMC	3 cut(s)	34, 171, 483
BalI	TGGCCA	4 cut(s)	139, 198, 219, 345
BanII	GRGCYC	1 cut(s)	483
BauI	CACGAG	1 cut(s)	687
BbsI	GAAGAC	1 cut(s)	372
BbvI	GCAGC	1 cut(s)	504
BccI	CCATC	3 cut(s)	261, 544, 617
BcgI	CGANNNNNNTGC	2 cut(s)	64, 98
BciT130I	CCWGG	1 cut(s)	630
BcoDI	GTCTC	3 cut(s)	86, 134, 690
BfaI	CTAG	3 cut(s)	213, 464, 471
BfuAI	ACCTGC	1 cut(s)	76
BisI	GCNGC	1 cut(s)	493
BlsI	GCNGC	1 cut(s)	494
Bme1390I	CCNGG	1 cut(s)	630
BmeT110I	CYCGRG	1 cut(s)	20
BmgT120I	GGNCC	3 cut(s)	460, 479, 480
BmiI	GGNNCC	2 cut(s)	480, 481
BmrFI	CCNGG	1 cut(s)	630
BmsI	GCATC	1 cut(s)	521
BpiI	GAAGAC	1 cut(s)	372
Bsa29I	ATCGAT	1 cut(s)	612
BsaAI	YACGTR	1 cut(s)	352
BsaI	GGTCTC	1 cut(s)	134
BsaJI	CCNNGG	2 cut(s)	569, 629
BsaWI	WCCGGW	1 cut(s)	513
Bsc4I	CCNNNNNNNGG	6 cut(s)	110, 146, 328, 352, 488, 520
Bse118I	RCCGGY	1 cut(s)	513
Bse21I	CCTNAGG	1 cut(s)	123
BseBI	CCWGG	1 cut(s)	630
BseCI	ATCGAT	1 cut(s)	612
BseDI	CCNNGG	2 cut(s)	569, 629
BseGI	GGATG	2 cut(s)	536, 552
BseLI	CCNNNNNNNGG	6 cut(s)	110, 146, 328, 352, 488, 520
BseSI	GKGCMC	3 cut(s)	34, 171, 483
BseXI	GCAGC	1 cut(s)	504
BshFI	GGCC	7 cut(s)	139, 198, 219, 345, 462, 481, 628
BshTI	ACCGGT	1 cut(s)	513
BshVI	ATCGAT	1 cut(s)	612
BsiHKCI	CYCGRG	1 cut(s)	20
BsiSI	CCGG	1 cut(s)	514
BslI	CCNNNNNNNGG	6 cut(s)	110, 146, 328, 352, 488, 520
BsmAI	GTCTC	3 cut(s)	86, 134, 690
BsnI	GGCC	7 cut(s)	139, 198, 219, 345, 462, 481, 628
Bso31I	GGTCTC	1 cut(s)	134
BsoBI	CYCGRG	1 cut(s)	20
Bsp120I	GGGCCC	1 cut(s)	479
Bsp1286I	GDGCHC	3 cut(s)	34, 171, 483
Bsp143I	GATC	3 cut(s)	406, 453, 613
BspACI	CCGC	2 cut(s)	144, 634
BspANI	GGCC	7 cut(s)	139, 198, 219, 345, 462, 481, 628
BspDI	ATCGAT	1 cut(s)	612
BspLI	GGNNCC	2 cut(s)	480, 481
BspMI	ACCTGC	1 cut(s)	76
BspPI	GGATC	1 cut(s)	461
BspTNI	GGTCTC	1 cut(s)	134
BsrFI	RCCGGY	1 cut(s)	513
BssAI	RCCGGY	1 cut(s)	513
BssECI	CCNNGG	2 cut(s)	569, 629
BssMI	GATC	3 cut(s)	406, 453, 613
BssSI	CACGAG	1 cut(s)	687
BssT1I	CCWWGG	1 cut(s)	569
Bst2BI	CACGAG	1 cut(s)	687
Bst2UI	CCWGG	1 cut(s)	630
Bst4CI	ACNGT	1 cut(s)	239
Bst6I	CTCTTC	1 cut(s)	679
BstBAI	YACGTR	1 cut(s)	352
BstC8I	GCNNGC	2 cut(s)	73, 648
BstDEI	CTNAG	1 cut(s)	123
BstF5I	GGATG	2 cut(s)	536, 552
BstKTI	GATC	3 cut(s)	409, 456, 616
BstMAI	GTCTC	3 cut(s)	86, 134, 690
BstMBI	GATC	3 cut(s)	406, 453, 613
BstMWI	GCNNNNNNNGC	2 cut(s)	38, 195
BstNI	CCWGG	1 cut(s)	630
BstSCI	CCNGG	1 cut(s)	628
BstSLI	GKGCMC	3 cut(s)	34, 171, 483
BstV1I	GCAGC	1 cut(s)	504
BstV2I	GAAGAC	1 cut(s)	372
Bsu15I	ATCGAT	1 cut(s)	612
Bsu36I	CCTNAGG	1 cut(s)	123
BsuRI	GGCC	7 cut(s)	139, 198, 219, 345, 462, 481, 628
BsuTUI	ATCGAT	1 cut(s)	612
BtsCI	GGATG	2 cut(s)	536, 552
BveI	ACCTGC	1 cut(s)	76
Cac8I	GCNNGC	2 cut(s)	73, 648
Cfr10I	RCCGGY	1 cut(s)	513
Cfr13I	GGNCC	3 cut(s)	460, 479, 480
ClaI	ATCGAT	1 cut(s)	612
Csp6I	GTAC	1 cut(s)	250
CspAI	ACCGGT	1 cut(s)	513
CviAII	CATG	5 cut(s)	190, 373, 385, 457, 600
CviQI	GTAC	1 cut(s)	250
DdeI	CTNAG	1 cut(s)	123
DpnI	GATC	3 cut(s)	408, 455, 615
DpnII	GATC	3 cut(s)	406, 453, 613
EaeI	YGGCCR	4 cut(s)	137, 196, 217, 343
Eam1104I	CTCTTC	1 cut(s)	679
EarI	CTCTTC	1 cut(s)	679
Eco130I	CCWWGG	1 cut(s)	569
Eco24I	GRGCYC	1 cut(s)	483
Eco31I	GGTCTC	1 cut(s)	134
Eco81I	CCTNAGG	1 cut(s)	123
Eco88I	CYCGRG	1 cut(s)	20
EcoO109I	RGGNCCY	1 cut(s)	479
EcoRI	GAATTC	1 cut(s)	313
EcoRII	CCWGG	1 cut(s)	628
EcoT14I	CCWWGG	1 cut(s)	569
EcoT38I	GRGCYC	1 cut(s)	483
ErhI	CCWWGG	1 cut(s)	569
FaeI	CATG	5 cut(s)	193, 376, 388, 460, 603
FalI	AAGNNNNNCTT	4 cut(s)	213, 245, 393, 425
FatI	CATG	5 cut(s)	189, 372, 384, 456, 599
FauI	CCCGC	1 cut(s)	627
Fnu4HI	GCNGC	1 cut(s)	493
FokI	GGATG	2 cut(s)	543, 559
FriOI	GRGCYC	1 cut(s)	483
Fsp4HI	GCNGC	1 cut(s)	493
FspBI	CTAG	3 cut(s)	213, 464, 471
GluI	GCNGC	1 cut(s)	493
HaeIII	GGCC	7 cut(s)	139, 198, 219, 345, 462, 481, 628
HapII	CCGG	1 cut(s)	514
Hin1II	CATG	5 cut(s)	193, 376, 388, 460, 603
HincII	GTYRAC	1 cut(s)	267
HindII	GTYRAC	1 cut(s)	267
HinfI	GANTC	3 cut(s)	467, 565, 683
HpaI	GTTAAC	1 cut(s)	267
HpaII	CCGG	1 cut(s)	514
Hpy166II	GTNNAC	2 cut(s)	267, 277
Hpy188III	TCNNGA	5 cut(s)	13, 62, 302, 362, 471
Hpy8I	GTNNAC	2 cut(s)	267, 277
HpyAV	CCTTC	2 cut(s)	239, 668
HpyCH4III	ACNGT	1 cut(s)	239
HpyCH4IV	ACGT	3 cut(s)	58, 184, 351
HpyCH4V	TGCA	3 cut(s)	189, 646, 670
HpyF10VI	GCNNNNNNNGC	2 cut(s)	38, 195
HpyF3I	CTNAG	1 cut(s)	123
HpySE526I	ACGT	3 cut(s)	58, 184, 351
Hsp92II	CATG	5 cut(s)	193, 376, 388, 460, 603
KspAI	GTTAAC	1 cut(s)	267
Kzo9I	GATC	3 cut(s)	406, 453, 613
LpnPI	CCDG	7 cut(s)	81, 121, 212, 335, 527, 615, 642
Lsp1109I	GCAGC	1 cut(s)	504
LweI	GCATC	1 cut(s)	521
MaeI	CTAG	3 cut(s)	213, 464, 471
MaeII	ACGT	3 cut(s)	58, 184, 351
MaeIII	GTNAC	1 cut(s)	509
MalI	GATC	3 cut(s)	408, 455, 615
MboI	GATC	3 cut(s)	406, 453, 613
MboII	GAAGA	5 cut(s)	377, 411, 608, 650, 666
MfeI	CAATTG	1 cut(s)	665
MhlI	GDGCHC	3 cut(s)	34, 171, 483
MlsI	TGGCCA	4 cut(s)	139, 198, 219, 345
MluCI	AATT	6 cut(s)	50, 205, 242, 280, 313, 665
MluNI	TGGCCA	4 cut(s)	139, 198, 219, 345
MlyI	GAGTC	1 cut(s)	692
MmeI	TCCRAC	1 cut(s)	311
MnlI	CCTC	6 cut(s)	9, 73, 158, 447, 514, 706
Mox20I	TGGCCA	4 cut(s)	139, 198, 219, 345
MroXI	GAANNNNTTC	1 cut(s)	418
MscI	TGGCCA	4 cut(s)	139, 198, 219, 345
MseI	TTAA	2 cut(s)	266, 581
Msp20I	TGGCCA	4 cut(s)	139, 198, 219, 345
MspI	CCGG	1 cut(s)	514
MspR9I	CCNGG	1 cut(s)	630
MunI	CAATTG	1 cut(s)	665
MvaI	CCWGG	1 cut(s)	630
MwoI	GCNNNNNNNGC	2 cut(s)	38, 195
NdeII	GATC	3 cut(s)	406, 453, 613
NlaIII	CATG	5 cut(s)	193, 376, 388, 460, 603
NlaIV	GGNNCC	2 cut(s)	480, 481
NmuCI	GTSAC	1 cut(s)	509
PaeR7I	CTCGAG	1 cut(s)	20
PcsI	WCGNNNNNNNCGW	1 cut(s)	18
PdmI	GAANNNNTTC	1 cut(s)	418
PfeI	GAWTC	2 cut(s)	467, 565
PflMI	CCANNNNNTGG	3 cut(s)	146, 328, 352
PinAI	ACCGGT	1 cut(s)	513
PkrI	GCNGC	1 cut(s)	494
PleI	GAGTC	1 cut(s)	691
PpsI	GAGTC	1 cut(s)	691
Ppu21I	YACGTR	1 cut(s)	352
Psp6I	CCWGG	1 cut(s)	628
PspGI	CCWGG	1 cut(s)	628
PspN4I	GGNNCC	2 cut(s)	480, 481
PspOMI	GGGCCC	1 cut(s)	479
PspPI	GGNCC	3 cut(s)	460, 479, 480
PspXI	VCTCGAGB	1 cut(s)	20
RsaI	GTAC	1 cut(s)	251
RsaNI	GTAC	1 cut(s)	250
SaqAI	TTAA	2 cut(s)	266, 581
SatI	GCNGC	1 cut(s)	493
Sau3AI	GATC	3 cut(s)	406, 453, 613
Sau96I	GGNCC	3 cut(s)	460, 479, 480
SchI	GAGTC	1 cut(s)	692
ScrFI	CCNGG	1 cut(s)	630
SduI	GDGCHC	3 cut(s)	34, 171, 483
SfaNI	GCATC	1 cut(s)	521
Sfr274I	CTCGAG	1 cut(s)	20
SlaI	CTCGAG	1 cut(s)	20
SmlI	CTYRAG	1 cut(s)	20
SmoI	CTYRAG	1 cut(s)	20
Sse9I	AATT	6 cut(s)	50, 205, 242, 280, 313, 665
SsiI	CCGC	2 cut(s)	144, 634
SspMI	CTAG	3 cut(s)	213, 464, 471
StyD4I	CCNGG	1 cut(s)	628
StyI	CCWWGG	1 cut(s)	569
TaaI	ACNGT	1 cut(s)	239
TaiI	ACGT	3 cut(s)	61, 187, 354
TaqI	TCGA	4 cut(s)	12, 21, 502, 612
TasI	AATT	6 cut(s)	50, 205, 242, 280, 313, 665
TfiI	GAWTC	2 cut(s)	467, 565
Tru1I	TTAA	2 cut(s)	266, 581
Tru9I	TTAA	2 cut(s)	266, 581
TseFI	GTSAC	1 cut(s)	509
TseI	GCWGC	1 cut(s)	492
Tsp45I	GTSAC	1 cut(s)	509
TspDTI	ATGAA	3 cut(s)	206, 306, 411
TspGWI	ACGGA	1 cut(s)	466
Van91I	CCANNNNNTGG	3 cut(s)	146, 328, 352
XapI	RAATTY	2 cut(s)	242, 313
XbaI	TCTAGA	1 cut(s)	470
XhoI	CTCGAG	1 cut(s)	20
XmnI	GAANNNNTTC	1 cut(s)	418
XspI	CTAG	3 cut(s)	213, 464, 471

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.