Rroxscaffold_4G00332020

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_roxburghii
GWHEROQ00000004
OG0000314
Physical Location & Seq
Reverse (-)
65994553 .. 65995235
683 bp
Loading structure...
UTR
Exon/CDS
Intron
Rroxscaffold_4G00332020.1

Sequence Viewer

Length: 648 bp
ATGGTTCTTCCGACAATACAATTGTCTCCGAACATATATCCGATTTCTCCACCGATCCAGCCATATACATGGATACCGGTCGAGATACATGGGGGGCAAGACATAGCCCATGTTCATTCCTTTGATCACCGAGAAGATGAGTTGGATAGCCGAGAGATGCTTAAATATGATGATCGAAAGATCAACCTCTTAATTATAAGAAAGAAAGGGCTACCATATGACTTTATTCAAAAGAGGATGATAATACCGATGTTATTGGACCCTACCATGGTCAAGAAAGTGATCAAAAGCATGATCAAAATGGTCAACTCATTTATTAATCAAGTGGTTTTCATGGCACCGGACGTTTTCATGAAGATGGTCAAGCCAATCTGTGGCTTCATTAATCAATTCAACTTGATATTCATCTATGCTTCAAGGCCAGGTGGTGGCTTTGACATACGTGGAAGACACATCTGCAGCCCACCTTCCAAGAGTGGCGAGAACAATAATTCTAGTGGCCAATTTGTCCTTCGCAACTATAAATTAGAGTATCATCGGTGCAAGTTAACTCTTGCTTACAATTATCCAGCTCCAAATTTCTTGCAAAAGAAATTTGTCTATGATGGTACTGAAATGATTATAGAGGCGTCTCAATATGATGCCTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

215

Amino Acids

24.91

Weight (kDa)

9.14

Isoelectric Point (pI)

48.1

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0000314)

Species Orthologous Gene IDs
fragaria_vesca FvH4_1g02272 FvH4_1g22661 FvH4_2g10242 FvH4_2g34051 FvH4_3g19221 FvH4_3g29651 FvH4_3g30891 FvH4_4g11061 FvH4_5g09250 FvH4_5g15302 FvH4_5g15303 FvH4_5g15304 FvH4_5g28521 FvH4_6g23591 FvH4_7g05710 FvH4_7g19520
pyrus_communis pycom07g06330
rosa_chinensis RchiOBHm_Chr5g0027301 RchiOBHm_Chr6g0251451 RchiOBHm_Chr6g0274861
rosa_laevigata RLG00000007850
rosa_multiflora Rmu_co8230721.1_g000001 Rmu_sc0000271.1_g000027 Rmu_sc0000303.1_g000024 Rmu_sc0000368.1_g000024 Rmu_sc0000621.1_g000037 Rmu_sc0000693.1_g000081 Rmu_sc0001229.1_g000006 Rmu_sc0001373.1_g000003 Rmu_sc0001459.1_g000001 Rmu_sc0001744.1_g000002 Rmu_sc0001909.1_g000002 Rmu_sc0002053.1_g000012 Rmu_sc0002060.1_g000015 Rmu_sc0002119.1_g000036 Rmu_sc0002177.1_g000007 Rmu_sc0002822.1_g000024 Rmu_sc0002965.1_g000015 Rmu_sc0003363.1_g000051 Rmu_sc0003500.1_g000013 Rmu_sc0004191.1_g000020 Rmu_sc0004904.1_g000032 Rmu_sc0005325.1_g000008 Rmu_sc0005947.1_g000040 Rmu_sc0006475.1_g000001 Rmu_sc0006522.1_g000019 Rmu_sc0007102.1_g000005 Rmu_sc0007810.1_g000003 Rmu_sc0008339.1_g000025 Rmu_sc0008698.1_g000004 Rmu_sc0009313.1_g000006 Rmu_sc0009850.1_g000006 Rmu_sc0010598.1_g000003 Rmu_sc0011162.1_g000002 Rmu_sc0011824.1_g000004 Rmu_sc0011900.1_g000010 Rmu_sc0012291.1_g000006 Rmu_sc0012619.1_g000003 Rmu_sc0014679.1_g000001 Rmu_sc0019053.1_g000001 Rmu_sc0021462.1_g000003 Rmu_sc0024172.1_g000001 Rmu_sc0024173.1_g000001 Rmu_ssc0000052.1_g000016 Rmu_ssc0000392.1_g000010 Rmu_ssc0000421.1_g000062 Rmu_ssc0000479.1_g000006
rosa_roxburghii Rroxscaffold_153G00436600 Rroxscaffold_1G00008580 Rroxscaffold_1G00016770 Rroxscaffold_1G00029550 Rroxscaffold_1G00036450 Rroxscaffold_1G00040410 Rroxscaffold_1G00047110 Rroxscaffold_1G00060570 Rroxscaffold_2G00081500 Rroxscaffold_2G00081510 Rroxscaffold_2G00086080 Rroxscaffold_2G00099620 Rroxscaffold_2G00099630 Rroxscaffold_2G00099640 Rroxscaffold_2G00109170 Rroxscaffold_2G00127750 Rroxscaffold_2G00128590 Rroxscaffold_2G00130780 Rroxscaffold_2G00131040 Rroxscaffold_2G00143160 Rroxscaffold_3G00229280 Rroxscaffold_3G00229290 Rroxscaffold_3G00229970 Rroxscaffold_3G00242860 Rroxscaffold_3G00242890 Rroxscaffold_3G00242900 Rroxscaffold_3G00248200 Rroxscaffold_4G00284550 Rroxscaffold_4G00288780 Rroxscaffold_4G00298620 Rroxscaffold_4G00298630 Rroxscaffold_4G00312420 Rroxscaffold_4G00320310 Rroxscaffold_4G00322220 Rroxscaffold_4G00323600 Rroxscaffold_4G00331830 Rroxscaffold_4G00332010 Rroxscaffold_4G00332020 Rroxscaffold_5G00344470 Rroxscaffold_5G00345310 Rroxscaffold_5G00356120 Rroxscaffold_5G00368700 Rroxscaffold_5G00379820 Rroxscaffold_5G00382480 Rroxscaffold_6G00395080 Rroxscaffold_6G00405520 Rroxscaffold_6G00428210 Rroxscaffold_7G00193460
rosa_samantha Rh7CG413200 Rh7DG284900

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 1 cut(s) 197
AccB1I GGYRCC 1 cut(s) 337
AccB7I CCANNNNNTGG 2 cut(s) 374, 428
AclWI GGATC 1 cut(s) 49
AcoI YGGCCR 1 cut(s) 499
AcsI RAATTY 2 cut(s) 577, 593
AcyI GRCGYC 1 cut(s) 629
AfaI GTAC 1 cut(s) 610
AfiI CCNNNNNNNGG 3 cut(s) 268, 374, 428
AgeI ACCGGT 1 cut(s) 76
AgsI TTSAA 3 cut(s) 230, 394, 417
AjnI CCWGG 1 cut(s) 421
AjuI GAANNNNNNNTTGG 2 cut(s) 495, 527
AluBI AGCT 1 cut(s) 572
AluI AGCT 1 cut(s) 572
Alw26I GTCTC 2 cut(s) 30, 636
AlwI GGATC 1 cut(s) 49
AoxI GGCC 2 cut(s) 419, 499
ApeKI GCWGC 1 cut(s) 459
ApoI RAATTY 2 cut(s) 577, 593
AseI ATTAAT 2 cut(s) 318, 384
AsiGI ACCGGT 1 cut(s) 76
AspS9I GGNCC 1 cut(s) 259
AsuHPI GGTGA 1 cut(s) 119
AvaII GGWCC 1 cut(s) 259
BalI TGGCCA 1 cut(s) 501
BanI GGYRCC 1 cut(s) 337
BbsI GAAGAC 1 cut(s) 454
BbvI GCAGC 1 cut(s) 471
BccI CCATC 2 cut(s) 352, 599
BciT130I CCWGG 1 cut(s) 423
BciVI GTATCC 1 cut(s) 66
BclI TGATCA 3 cut(s) 124, 282, 294
BcoDI GTCTC 2 cut(s) 30, 636
BfaI CTAG 2 cut(s) 495, 646
BfmI CTRYAG 1 cut(s) 457
BfuI GTATCC 1 cut(s) 66
BisI GCNGC 1 cut(s) 460
BlsI GCNGC 1 cut(s) 461
Bme1390I CCNGG 1 cut(s) 423
Bme18I GGWCC 1 cut(s) 259
BmgT120I GGNCC 1 cut(s) 259
BmiI GGNNCC 2 cut(s) 261, 339
BmrFI CCNGG 1 cut(s) 423
BmsI GCATC 2 cut(s) 147, 631
BpiI GAAGAC 1 cut(s) 454
BsaAI YACGTR 1 cut(s) 443
BsaBI GATNNNNATC 1 cut(s) 404
BsaHI GRCGYC 1 cut(s) 629
BsaJI CCNNGG 1 cut(s) 267
BsaWI WCCGGW 2 cut(s) 76, 340
Bsc4I CCNNNNNNNGG 3 cut(s) 268, 374, 428
Bse118I RCCGGY 1 cut(s) 76
Bse8I GATNNNNATC 1 cut(s) 404
BseBI CCWGG 1 cut(s) 423
BseDI CCNNGG 1 cut(s) 267
BseGI GGATG 1 cut(s) 243
BseJI GATNNNNATC 1 cut(s) 404
BseLI CCNNNNNNNGG 3 cut(s) 268, 374, 428
BseXI GCAGC 1 cut(s) 471
Bsh1285I CGRYCG 1 cut(s) 81
BshFI GGCC 2 cut(s) 421, 501
BshNI GGYRCC 1 cut(s) 337
BshTI ACCGGT 1 cut(s) 76
BsiEI CGRYCG 1 cut(s) 81
BsiSI CCGG 2 cut(s) 77, 341
BslI CCNNNNNNNGG 3 cut(s) 268, 374, 428
BsmAI GTCTC 2 cut(s) 30, 636
BsmBI CGTCTC 1 cut(s) 636
BsnI GGCC 2 cut(s) 421, 501
Bsp143I GATC 6 cut(s) 54, 124, 172, 180, 282, 294
Bsp19I CCATGG 1 cut(s) 267
BspANI GGCC 2 cut(s) 421, 501
BspHI TCATGA 1 cut(s) 351
BspLI GGNNCC 2 cut(s) 261, 339
BspMAI CTGCAG 1 cut(s) 461
BspPI GGATC 1 cut(s) 49
BspT107I GGYRCC 1 cut(s) 337
BsrFI RCCGGY 1 cut(s) 76
BssAI RCCGGY 1 cut(s) 76
BssECI CCNNGG 1 cut(s) 267
BssMI GATC 6 cut(s) 54, 124, 172, 180, 282, 294
BssNI GRCGYC 1 cut(s) 629
BssT1I CCWWGG 1 cut(s) 267
Bst2UI CCWGG 1 cut(s) 423
BstACI GRCGYC 1 cut(s) 629
BstBAI YACGTR 1 cut(s) 443
BstDSI CCRYGG 1 cut(s) 267
BstF5I GGATG 1 cut(s) 243
BstKTI GATC 6 cut(s) 57, 127, 175, 183, 285, 297
BstMAI GTCTC 2 cut(s) 30, 636
BstMBI GATC 6 cut(s) 54, 124, 172, 180, 282, 294
BstMCI CGRYCG 1 cut(s) 81
BstNI CCWGG 1 cut(s) 423
BstSCI CCNGG 1 cut(s) 421
BstSFI CTRYAG 1 cut(s) 457
BstV1I GCAGC 1 cut(s) 471
BstV2I GAAGAC 1 cut(s) 454
BstXI CCANNNNNNTGG 1 cut(s) 69
BsuI GTATCC 1 cut(s) 66
BsuRI GGCC 2 cut(s) 421, 501
BtgI CCRYGG 1 cut(s) 267
BtsCI GGATG 1 cut(s) 243
CciI TCATGA 1 cut(s) 351
Cfr10I RCCGGY 1 cut(s) 76
Cfr13I GGNCC 1 cut(s) 259
CseI GACGC 1 cut(s) 618
Csp6I GTAC 1 cut(s) 609
CspAI ACCGGT 1 cut(s) 76
CviAII CATG 7 cut(s) 69, 89, 110, 268, 292, 334, 352
CviQI GTAC 1 cut(s) 609
DpnI GATC 6 cut(s) 56, 126, 174, 182, 284, 296
DpnII GATC 6 cut(s) 54, 124, 172, 180, 282, 294
EaeI YGGCCR 1 cut(s) 499
Eco130I CCWWGG 1 cut(s) 267
Eco47I GGWCC 1 cut(s) 259
EcoRII CCWGG 1 cut(s) 421
EcoT14I CCWWGG 1 cut(s) 267
ErhI CCWWGG 1 cut(s) 267
Esp3I CGTCTC 1 cut(s) 636
FaeI CATG 7 cut(s) 72, 92, 113, 271, 295, 337, 355
FatI CATG 7 cut(s) 68, 88, 109, 267, 291, 333, 351
FauNDI CATATG 1 cut(s) 217
FbaI TGATCA 3 cut(s) 124, 282, 294
Fnu4HI GCNGC 1 cut(s) 460
FokI GGATG 1 cut(s) 250
Fsp4HI GCNGC 1 cut(s) 460
FspBI CTAG 2 cut(s) 495, 646
GluI GCNGC 1 cut(s) 460
HaeIII GGCC 2 cut(s) 421, 501
HapII CCGG 2 cut(s) 77, 341
HgaI GACGC 1 cut(s) 618
Hin1I GRCGYC 1 cut(s) 629
Hin1II CATG 7 cut(s) 72, 92, 113, 271, 295, 337, 355
HincII GTYRAC 2 cut(s) 307, 549
HindII GTYRAC 2 cut(s) 307, 549
HpaI GTTAAC 1 cut(s) 549
HpaII CCGG 2 cut(s) 77, 341
HphI GGTGA 1 cut(s) 119
Hpy166II GTNNAC 2 cut(s) 307, 549
Hpy188I TCNGA 3 cut(s) 12, 30, 42
Hpy188III TCNNGA 3 cut(s) 82, 274, 352
Hpy8I GTNNAC 2 cut(s) 307, 549
HpyAV CCTTC 2 cut(s) 477, 521
HpyCH4IV ACGT 2 cut(s) 345, 442
HpyCH4V TGCA 3 cut(s) 459, 543, 586
HpySE526I ACGT 2 cut(s) 345, 442
Hsp92I GRCGYC 1 cut(s) 629
Hsp92II CATG 7 cut(s) 72, 92, 113, 271, 295, 337, 355
Ksp22I TGATCA 3 cut(s) 124, 282, 294
KspAI GTTAAC 1 cut(s) 549
Kzo9I GATC 6 cut(s) 54, 124, 172, 180, 282, 294
LmnI GCTCC 1 cut(s) 577
LpnPI CCDG 6 cut(s) 71, 90, 354, 408, 435, 582
Lsp1109I GCAGC 1 cut(s) 471
LweI GCATC 2 cut(s) 147, 631
MaeI CTAG 2 cut(s) 495, 646
MaeII ACGT 2 cut(s) 345, 442
MalI GATC 6 cut(s) 56, 126, 174, 182, 284, 296
MboI GATC 6 cut(s) 54, 124, 172, 180, 282, 294
MboII GAAGA 3 cut(s) 146, 367, 459
MfeI CAATTG 1 cut(s) 20
MlsI TGGCCA 1 cut(s) 501
MluCI AATT 9 cut(s) 20, 192, 389, 490, 503, 524, 562, 577, 593
MluNI TGGCCA 1 cut(s) 501
MmeI TCCRAC 2 cut(s) 35, 123
MnlI CCTC 3 cut(s) 197, 228, 619
Mox20I TGGCCA 1 cut(s) 501
MscI TGGCCA 1 cut(s) 501
MseI TTAA 5 cut(s) 162, 191, 318, 384, 548
MslI CAYNNNNRTG 2 cut(s) 67, 356
Msp20I TGGCCA 1 cut(s) 501
MspI CCGG 2 cut(s) 77, 341
MspR9I CCNGG 1 cut(s) 423
MunI CAATTG 1 cut(s) 20
MvaI CCWGG 1 cut(s) 423
NcoI CCATGG 1 cut(s) 267
NdeI CATATG 1 cut(s) 217
NdeII GATC 6 cut(s) 54, 124, 172, 180, 282, 294
NlaIII CATG 7 cut(s) 72, 92, 113, 271, 295, 337, 355
NlaIV GGNNCC 2 cut(s) 261, 339
NmeAIII GCCGAG 1 cut(s) 176
PagI TCATGA 1 cut(s) 351
PflMI CCANNNNNTGG 2 cut(s) 374, 428
PinAI ACCGGT 1 cut(s) 76
PkrI GCNGC 1 cut(s) 461
Ppu21I YACGTR 1 cut(s) 443
PshBI ATTAAT 2 cut(s) 318, 384
PsiI TTATAA 1 cut(s) 197
Psp6I CCWGG 1 cut(s) 421
PspGI CCWGG 1 cut(s) 421
PspN4I GGNNCC 2 cut(s) 261, 339
PspPI GGNCC 1 cut(s) 259
PstI CTGCAG 1 cut(s) 461
RsaI GTAC 1 cut(s) 610
RsaNI GTAC 1 cut(s) 609
RseI CAYNNNNRTG 2 cut(s) 67, 356
SaqAI TTAA 5 cut(s) 162, 191, 318, 384, 548
SatI GCNGC 1 cut(s) 460
Sau3AI GATC 6 cut(s) 54, 124, 172, 180, 282, 294
Sau96I GGNCC 1 cut(s) 259
ScrFI CCNGG 1 cut(s) 423
SetI ASST 6 cut(s) 189, 348, 427, 445, 469, 574
SfaNI GCATC 2 cut(s) 147, 631
SfcI CTRYAG 1 cut(s) 457
SinI GGWCC 1 cut(s) 259
SmiMI CAYNNNNRTG 2 cut(s) 67, 356
Sse9I AATT 9 cut(s) 20, 192, 389, 490, 503, 524, 562, 577, 593
SspMI CTAG 2 cut(s) 495, 646
StyD4I CCNGG 1 cut(s) 421
StyI CCWWGG 1 cut(s) 267
TaiI ACGT 2 cut(s) 348, 445
TaqI TCGA 2 cut(s) 81, 175
TasI AATT 9 cut(s) 20, 192, 389, 490, 503, 524, 562, 577, 593
Tru1I TTAA 5 cut(s) 162, 191, 318, 384, 548
Tru9I TTAA 5 cut(s) 162, 191, 318, 384, 548
TseI GCWGC 1 cut(s) 459
TspDTI ATGAA 6 cut(s) 104, 322, 340, 368, 370, 394
Van91I CCANNNNNTGG 2 cut(s) 374, 428
VpaK11BI GGWCC 1 cut(s) 259
VspI ATTAAT 2 cut(s) 318, 384
XapI RAATTY 2 cut(s) 577, 593
XspI CTAG 2 cut(s) 495, 646
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.