Rroxscaffold_1G00029550

Belongs to the tRNA nucleotidyltransferase poly(A) polymerase family

Basic Information

Type: gene
Biological Identity
rosa_roxburghii
GWHEROQ00000001
Physical Location & Seq
Reverse (-)
38156551 .. 38157314
764 bp
Loading structure...
UTR
Exon/CDS
Intron
Rroxscaffold_1G00029550.1

Sequence Viewer

Length: 372 bp
ATGTTCTATGATATGGTAGTTGGTAACAAAGCCGATCTATACTCATCTTCATGTCCAAAATTGCAATTGAAGATCATGCTTCGTCAACCAACAAGGATACTTGGGGGGCAAGATTACCCCTCTCACGAGCCAAATTCCTCCAAATTCTTCAATGCGAATTGGCAAAGACAAGACATCGAGTTCATGACAAAGGCAATTCAGATTGTGGCATTCAAGCTTTATGGCCTATTTAGAGGCCTATATGGAATCAATCAAATAATTTCAGTCAAGCCAATACAAGTGGCTTTGGAGCAACGACATTATAAGAGCGGTCTTGATTCAAGACCTCTTCGGTCTAGACAAAGACCTTTGACTTCGAGGTCCGGGAGGTAA

Protein Analysis

123

Amino Acids

14.24

Weight (kDa)

10.24

Isoelectric Point (pI)

61.38

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready

Orthologous Genes (Group: OG0000314)

Species Orthologous Gene IDs
fragaria_vesca FvH4_1g02272 FvH4_1g22661 FvH4_2g10242 FvH4_2g34051 FvH4_3g19221 FvH4_3g29651 FvH4_3g30891 FvH4_4g11061 FvH4_5g09250 FvH4_5g15302 FvH4_5g15303 FvH4_5g15304 FvH4_5g28521 FvH4_6g23591 FvH4_7g05710 FvH4_7g19520
pyrus_communis pycom07g06330
rosa_chinensis RchiOBHm_Chr5g0027301 RchiOBHm_Chr6g0251451 RchiOBHm_Chr6g0274861
rosa_laevigata RLG00000007850
rosa_multiflora Rmu_co8230721.1_g000001 Rmu_sc0000271.1_g000027 Rmu_sc0000303.1_g000024 Rmu_sc0000368.1_g000024 Rmu_sc0000621.1_g000037 Rmu_sc0000693.1_g000081 Rmu_sc0001229.1_g000006 Rmu_sc0001373.1_g000003 Rmu_sc0001459.1_g000001 Rmu_sc0001744.1_g000002 Rmu_sc0001909.1_g000002 Rmu_sc0002053.1_g000012 Rmu_sc0002060.1_g000015 Rmu_sc0002119.1_g000036 Rmu_sc0002177.1_g000007 Rmu_sc0002822.1_g000024 Rmu_sc0002965.1_g000015 Rmu_sc0003363.1_g000051 Rmu_sc0003500.1_g000013 Rmu_sc0004191.1_g000020 Rmu_sc0004904.1_g000032 Rmu_sc0005325.1_g000008 Rmu_sc0005947.1_g000040 Rmu_sc0006475.1_g000001 Rmu_sc0006522.1_g000019 Rmu_sc0007102.1_g000005 Rmu_sc0007810.1_g000003 Rmu_sc0008339.1_g000025 Rmu_sc0008698.1_g000004 Rmu_sc0009313.1_g000006 Rmu_sc0009850.1_g000006 Rmu_sc0010598.1_g000003 Rmu_sc0011162.1_g000002 Rmu_sc0011824.1_g000004 Rmu_sc0011900.1_g000010 Rmu_sc0012291.1_g000006 Rmu_sc0012619.1_g000003 Rmu_sc0014679.1_g000001 Rmu_sc0019053.1_g000001 Rmu_sc0021462.1_g000003 Rmu_sc0024172.1_g000001 Rmu_sc0024173.1_g000001 Rmu_ssc0000052.1_g000016 Rmu_ssc0000392.1_g000010 Rmu_ssc0000421.1_g000062 Rmu_ssc0000479.1_g000006
rosa_roxburghii Rroxscaffold_153G00436600 Rroxscaffold_1G00008580 Rroxscaffold_1G00016770 Rroxscaffold_1G00029550 Rroxscaffold_1G00036450 Rroxscaffold_1G00040410 Rroxscaffold_1G00047110 Rroxscaffold_1G00060570 Rroxscaffold_2G00081500 Rroxscaffold_2G00081510 Rroxscaffold_2G00086080 Rroxscaffold_2G00099620 Rroxscaffold_2G00099630 Rroxscaffold_2G00099640 Rroxscaffold_2G00109170 Rroxscaffold_2G00127750 Rroxscaffold_2G00128590 Rroxscaffold_2G00130780 Rroxscaffold_2G00131040 Rroxscaffold_2G00143160 Rroxscaffold_3G00229280 Rroxscaffold_3G00229290 Rroxscaffold_3G00229970 Rroxscaffold_3G00242860 Rroxscaffold_3G00242890 Rroxscaffold_3G00242900 Rroxscaffold_3G00248200 Rroxscaffold_4G00284550 Rroxscaffold_4G00288780 Rroxscaffold_4G00298620 Rroxscaffold_4G00298630 Rroxscaffold_4G00312420 Rroxscaffold_4G00320310 Rroxscaffold_4G00322220 Rroxscaffold_4G00323600 Rroxscaffold_4G00331830 Rroxscaffold_4G00332010 Rroxscaffold_4G00332020 Rroxscaffold_5G00344470 Rroxscaffold_5G00345310 Rroxscaffold_5G00356120 Rroxscaffold_5G00368700 Rroxscaffold_5G00379820 Rroxscaffold_5G00382480 Rroxscaffold_6G00395080 Rroxscaffold_6G00405520 Rroxscaffold_6G00428210 Rroxscaffold_7G00193460
rosa_samantha Rh7CG413200 Rh7DG284900

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 1 cut(s) 303
AasI GACNNNNNNGTC 1 cut(s) 358
AccBSI CCGCTC 1 cut(s) 309
AciI CCGC 1 cut(s) 309
AcsI RAATTY 2 cut(s) 133, 143
AgsI TTSAA 4 cut(s) 70, 151, 214, 321
AluBI AGCT 1 cut(s) 217
AluI AGCT 1 cut(s) 217
AoxI GGCC 2 cut(s) 223, 235
ApoI RAATTY 2 cut(s) 133, 143
AspS9I GGNCC 1 cut(s) 360
AsuC2I CCSGG 1 cut(s) 364
AvaII GGWCC 1 cut(s) 360
BauI CACGAG 1 cut(s) 125
BciVI GTATCC 1 cut(s) 90
BcnI CCSGG 1 cut(s) 364
BfaI CTAG 1 cut(s) 336
BfuI GTATCC 1 cut(s) 90
Bme1390I CCNGG 1 cut(s) 364
Bme18I GGWCC 1 cut(s) 360
BmgT120I GGNCC 1 cut(s) 360
BmrFI CCNGG 1 cut(s) 364
BpuMI CCSGG 1 cut(s) 364
BshFI GGCC 2 cut(s) 225, 237
BsiSI CCGG 1 cut(s) 363
BsmI GAATGC 1 cut(s) 209
BsnI GGCC 2 cut(s) 225, 237
Bsp143I GATC 2 cut(s) 34, 72
BspACI CCGC 1 cut(s) 309
BspANI GGCC 2 cut(s) 225, 237
BspHI TCATGA 1 cut(s) 183
BsrBI CCGCTC 1 cut(s) 309
BssMI GATC 2 cut(s) 34, 72
BssSI CACGAG 1 cut(s) 125
Bst2BI CACGAG 1 cut(s) 125
Bst6I CTCTTC 1 cut(s) 333
BstKTI GATC 2 cut(s) 37, 75
BstMBI GATC 2 cut(s) 34, 72
BstSCI CCNGG 1 cut(s) 362
BsuI GTATCC 1 cut(s) 90
BsuRI GGCC 2 cut(s) 225, 237
CciI TCATGA 1 cut(s) 183
Cfr13I GGNCC 1 cut(s) 360
CspCI CAANNNNNGTGG 2 cut(s) 261, 296
CviAII CATG 3 cut(s) 51, 76, 184
CviJI RGCY 7 cut(s) 32, 130, 217, 225, 237, 271, 284
CviKI_1 RGCY 7 cut(s) 32, 130, 217, 225, 237, 271, 284
DpnI GATC 2 cut(s) 36, 74
DpnII GATC 2 cut(s) 34, 72
DrdI GACNNNNNNGTC 1 cut(s) 358
DseDI GACNNNNNNGTC 1 cut(s) 358
Eam1104I CTCTTC 1 cut(s) 333
EarI CTCTTC 1 cut(s) 333
Eco147I AGGCCT 1 cut(s) 237
Eco47I GGWCC 1 cut(s) 360
FaeI CATG 3 cut(s) 54, 79, 187
FatI CATG 3 cut(s) 50, 75, 183
FspBI CTAG 1 cut(s) 336
HaeIII GGCC 2 cut(s) 225, 237
HapII CCGG 1 cut(s) 363
Hin1II CATG 3 cut(s) 54, 79, 187
HincII GTYRAC 1 cut(s) 86
HindII GTYRAC 1 cut(s) 86
HindIII AAGCTT 1 cut(s) 215
HinfI GANTC 2 cut(s) 246, 317
HpaII CCGG 1 cut(s) 363
Hpy166II GTNNAC 1 cut(s) 86
Hpy188I TCNGA 1 cut(s) 201
Hpy188III TCNNGA 5 cut(s) 125, 184, 314, 321, 336
Hpy8I GTNNAC 1 cut(s) 86
HpyCH4V TGCA 1 cut(s) 64
Hsp92II CATG 3 cut(s) 54, 79, 187
Kzo9I GATC 2 cut(s) 34, 72
LmnI GCTCC 1 cut(s) 289
MaeI CTAG 1 cut(s) 336
MaeIII GTNAC 1 cut(s) 23
MalI GATC 2 cut(s) 36, 74
MbiI CCGCTC 1 cut(s) 309
MboI GATC 2 cut(s) 34, 72
MboII GAAGA 4 cut(s) 39, 82, 139, 320
MfeI CAATTG 1 cut(s) 65
MluCI AATT 7 cut(s) 59, 65, 133, 143, 157, 195, 258
MnlI CCTC 6 cut(s) 130, 148, 227, 336, 351, 360
MslI CAYNNNNRTG 1 cut(s) 49
MspI CCGG 1 cut(s) 363
MspR9I CCNGG 1 cut(s) 364
MunI CAATTG 1 cut(s) 65
Mva1269I GAATGC 1 cut(s) 209
NciI CCSGG 1 cut(s) 364
NdeII GATC 2 cut(s) 34, 72
NlaIII CATG 3 cut(s) 54, 79, 187
PagI TCATGA 1 cut(s) 183
PceI AGGCCT 1 cut(s) 237
PctI GAATGC 1 cut(s) 209
PfeI GAWTC 2 cut(s) 246, 317
PfoI TCCNGGA 1 cut(s) 362
PsiI TTATAA 1 cut(s) 303
PspPI GGNCC 1 cut(s) 360
RseI CAYNNNNRTG 1 cut(s) 49
Sau3AI GATC 2 cut(s) 34, 72
Sau96I GGNCC 1 cut(s) 360
ScrFI CCNGG 1 cut(s) 364
SetI ASST 5 cut(s) 219, 328, 349, 362, 371
SinI GGWCC 1 cut(s) 360
SmiMI CAYNNNNRTG 1 cut(s) 49
Sse9I AATT 7 cut(s) 59, 65, 133, 143, 157, 195, 258
SseBI AGGCCT 1 cut(s) 237
SsiI CCGC 1 cut(s) 309
SspMI CTAG 1 cut(s) 336
StuI AGGCCT 1 cut(s) 237
StyD4I CCNGG 1 cut(s) 362
TaqI TCGA 2 cut(s) 177, 356
TaqII GACCGA 1 cut(s) 321
TasI AATT 7 cut(s) 59, 65, 133, 143, 157, 195, 258
TfiI GAWTC 2 cut(s) 246, 317
TspDTI ATGAA 2 cut(s) 39, 172
VpaK11BI GGWCC 1 cut(s) 360
XapI RAATTY 2 cut(s) 133, 143
XbaI TCTAGA 1 cut(s) 335
XspI CTAG 1 cut(s) 336
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.