Basic Information

Type: gene

Biological Identity

Species

rosa_roxburghii

Chromosome

GWHEROQ00000003

Orthogroup ID

OG0000314

Physical Location & Seq

Genomic Coordinates Forward (+)

35365860 .. 35370255

Gene Structure 4396 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rroxscaffold_3G00242860.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 804 bp

ATGGCCCACAAGAGTGTTCTTCTCGACAAGAAAGTTGTCTCGAGCAAATATTTCACTTCTCCACCGATCAAGCCAAATATATGGCTACCGACCGTATGCCCGGGGGGCATGATATTGCCCAGTTATTCAAATTTCTTGCAAAAGGAATTTGTCTATGATACCATACAGTCCATAGGGGCGTCTCAATATGATGCCCGGAAAGAAAACAGAGGCAAACAAATATTTGATATGCCTATTTTTGAAGAAGAGATCGATTCATCAAATTTTGGTGATTCTAAATATGATCTCAACAGGGAGCCAATCTATGATGAATATGATGATGATTACAATTTAATTATTGGTTCCAAAAATCATATGCAGCAGTTCAAATTCCTTGAACAAGTGGTTAAATACAATAGCCAATCTGTGGCTTATTCTAGATACACCATGCTCTATGACATGGTAGTTGGCGACAAAGCCGATCTTGGGACACCATCATCTCCAAAATTGCAATTGAAGATCATGCTTCGTCAACCAACAAAGATACTTGGGGGCAATATTACTCCTTCTACGAGCCGATTTCTTCCAAGTTTTCGACGCGAAAGATATCGGCCGGTGAAGAAAGAGCAGCTCGGGCGAATTCCAGCTCGAGCTGTGCAGCTTCTCAGCCTCCTATCGCCTCTCACGAGTTATGCGTCGCGAAGGACGCGAGGACATCGAGACCGGCCACGAGGAGTGACCGCGAAAGAGATGACCGCGAAAGAGGTGGCCGCGAGCGAATGGCAGGGAAGAAAATTAGTTCGCGAAGGAGGCCAACAAGAGTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003676 GO:0003723 GO:0003824 GO:0004652 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005829 GO:0006139 GO:0006276 GO:0006378 GO:0006396 GO:0006397 GO:0006725 GO:0006807 GO:0008150 GO:0008152 GO:0009451 GO:0009987 GO:0010467 GO:0016070 GO:0016071 GO:0016740 GO:0016772 GO:0016779 GO:0031123 GO:0031124 GO:0034641 GO:0043170 GO:0043412 GO:0043631 GO:0044237 GO:0044238 GO:0044424 GO:0044444 GO:0044464 GO:0046483 GO:0070566 GO:0071704 GO:0090304 GO:0097159 GO:1901360 GO:1901363

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

PolyA_pol PolyA_pol_RNAbd

Protein Analysis

267

Amino Acids

30.62

Weight (kDa)

9.55

Isoelectric Point (pI)

55.64

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0000314)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_1g02272 FvH4_1g22661 FvH4_2g10242 FvH4_2g34051 FvH4_3g19221 FvH4_3g29651 FvH4_3g30891 FvH4_4g11061 FvH4_5g09250 FvH4_5g15302 FvH4_5g15303 FvH4_5g15304 FvH4_5g28521 FvH4_6g23591 FvH4_7g05710 FvH4_7g19520
pyrus_communis	pycom07g06330
rosa_chinensis	RchiOBHm_Chr5g0027301 RchiOBHm_Chr6g0251451 RchiOBHm_Chr6g0274861
rosa_laevigata	RLG00000007850
rosa_multiflora	Rmu_co8230721.1_g000001 Rmu_sc0000271.1_g000027 Rmu_sc0000303.1_g000024 Rmu_sc0000368.1_g000024 Rmu_sc0000621.1_g000037 Rmu_sc0000693.1_g000081 Rmu_sc0001229.1_g000006 Rmu_sc0001373.1_g000003 Rmu_sc0001459.1_g000001 Rmu_sc0001744.1_g000002 Rmu_sc0001909.1_g000002 Rmu_sc0002053.1_g000012 Rmu_sc0002060.1_g000015 Rmu_sc0002119.1_g000036 Rmu_sc0002177.1_g000007 Rmu_sc0002822.1_g000024 Rmu_sc0002965.1_g000015 Rmu_sc0003363.1_g000051 Rmu_sc0003500.1_g000013 Rmu_sc0004191.1_g000020 Rmu_sc0004904.1_g000032 Rmu_sc0005325.1_g000008 Rmu_sc0005947.1_g000040 Rmu_sc0006475.1_g000001 Rmu_sc0006522.1_g000019 Rmu_sc0007102.1_g000005 Rmu_sc0007810.1_g000003 Rmu_sc0008339.1_g000025 Rmu_sc0008698.1_g000004 Rmu_sc0009313.1_g000006 Rmu_sc0009850.1_g000006 Rmu_sc0010598.1_g000003 Rmu_sc0011162.1_g000002 Rmu_sc0011824.1_g000004 Rmu_sc0011900.1_g000010 Rmu_sc0012291.1_g000006 Rmu_sc0012619.1_g000003 Rmu_sc0014679.1_g000001 Rmu_sc0019053.1_g000001 Rmu_sc0021462.1_g000003 Rmu_sc0024172.1_g000001 Rmu_sc0024173.1_g000001 Rmu_ssc0000052.1_g000016 Rmu_ssc0000392.1_g000010 Rmu_ssc0000421.1_g000062 Rmu_ssc0000479.1_g000006
rosa_roxburghii	Rroxscaffold_153G00436600 Rroxscaffold_1G00008580 Rroxscaffold_1G00016770 Rroxscaffold_1G00029550 Rroxscaffold_1G00036450 Rroxscaffold_1G00040410 Rroxscaffold_1G00047110 Rroxscaffold_1G00060570 Rroxscaffold_2G00081500 Rroxscaffold_2G00081510 Rroxscaffold_2G00086080 Rroxscaffold_2G00099620 Rroxscaffold_2G00099630 Rroxscaffold_2G00099640 Rroxscaffold_2G00109170 Rroxscaffold_2G00127750 Rroxscaffold_2G00128590 Rroxscaffold_2G00130780 Rroxscaffold_2G00131040 Rroxscaffold_2G00143160 Rroxscaffold_3G00229280 Rroxscaffold_3G00229290 Rroxscaffold_3G00229970 Rroxscaffold_3G00242860 Rroxscaffold_3G00242890 Rroxscaffold_3G00242900 Rroxscaffold_3G00248200 Rroxscaffold_4G00284550 Rroxscaffold_4G00288780 Rroxscaffold_4G00298620 Rroxscaffold_4G00298630 Rroxscaffold_4G00312420 Rroxscaffold_4G00320310 Rroxscaffold_4G00322220 Rroxscaffold_4G00323600 Rroxscaffold_4G00331830 Rroxscaffold_4G00332010 Rroxscaffold_4G00332020 Rroxscaffold_5G00344470 Rroxscaffold_5G00345310 Rroxscaffold_5G00356120 Rroxscaffold_5G00368700 Rroxscaffold_5G00379820 Rroxscaffold_5G00382480 Rroxscaffold_6G00395080 Rroxscaffold_6G00405520 Rroxscaffold_6G00428210 Rroxscaffold_7G00193460
rosa_samantha	Rh7CG413200 Rh7DG284900

Restriction Enzyme Sites

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Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB7I	CCANNNNNTGG	1 cut(s)	406
AccII	CGCG	7 cut(s)	579, 679, 688, 722, 737, 752, 783
AciI	CCGC	3 cut(s)	720, 735, 750
AcoI	YGGCCR	3 cut(s)	590, 704, 747
AcsI	RAATTY	5 cut(s)	130, 146, 262, 368, 618
AcyI	GRCGYC	1 cut(s)	179
AfiI	CCNNNNNNNGG	2 cut(s)	406, 465
AgsI	TTSAA	5 cut(s)	129, 242, 367, 377, 496
AleI	CACNNNNGTG	1 cut(s)	12
AluBI	AGCT	4 cut(s)	610, 626, 632, 640
AluI	AGCT	4 cut(s)	610, 626, 632, 640
Alw26I	GTCTC	3 cut(s)	43, 186, 693
Ama87I	CYCGRG	4 cut(s)	40, 100, 611, 627
AoxI	GGCC	5 cut(s)	3, 590, 704, 747, 790
ApeKI	GCWGC	3 cut(s)	358, 607, 637
ApoI	RAATTY	5 cut(s)	130, 146, 262, 368, 618
AspS9I	GGNCC	1 cut(s)	4
AsuC2I	CCSGG	3 cut(s)	101, 102, 196
AsuHPI	GGTGA	2 cut(s)	281, 607
AvaI	CYCGRG	4 cut(s)	40, 100, 611, 627
BauI	CACGAG	2 cut(s)	664, 708
BbvI	GCAGC	3 cut(s)	370, 619, 649
BccI	CCATC	1 cut(s)	481
BcnI	CCSGG	3 cut(s)	101, 102, 196
BcoDI	GTCTC	3 cut(s)	43, 186, 693
BfaI	CTAG	1 cut(s)	417
BglI	GCCNNNNNGGC	1 cut(s)	105
BisI	GCNGC	4 cut(s)	359, 608, 638, 750
BlsI	GCNGC	4 cut(s)	360, 609, 639, 751
Bme1390I	CCNGG	3 cut(s)	101, 102, 196
BmeT110I	CYCGRG	4 cut(s)	40, 100, 611, 627
BmgT120I	GGNCC	1 cut(s)	4
BmiI	GGNNCC	2 cut(s)	297, 343
BmrFI	CCNGG	3 cut(s)	101, 102, 196
BmrI	ACTGGG	1 cut(s)	114
BmsI	GCATC	1 cut(s)	181
BmuI	ACTGGG	1 cut(s)	114
BpuMI	CCSGG	3 cut(s)	101, 102, 196
Bsa29I	ATCGAT	1 cut(s)	252
BsaHI	GRCGYC	1 cut(s)	179
BsaI	GGTCTC	1 cut(s)	693
BsaJI	CCNNGG	2 cut(s)	100, 101
Bsc4I	CCNNNNNNNGG	2 cut(s)	406, 465
Bse118I	RCCGGY	2 cut(s)	592, 702
Bse1I	ACTGG	1 cut(s)	120
BseCI	ATCGAT	1 cut(s)	252
BseDI	CCNNGG	2 cut(s)	100, 101
BseLI	CCNNNNNNNGG	2 cut(s)	406, 465
BseMII	CTCAG	1 cut(s)	658
BseNI	ACTGG	1 cut(s)	120
BseRI	GAGGAG	1 cut(s)	726
BseX3I	CGGCCG	1 cut(s)	590
BseXI	GCAGC	3 cut(s)	370, 619, 649
BsgI	GTGCAG	1 cut(s)	656
Bsh1236I	CGCG	7 cut(s)	579, 679, 688, 722, 737, 752, 783
Bsh1285I	CGRYCG	2 cut(s)	93, 593
BshFI	GGCC	5 cut(s)	5, 592, 706, 749, 792
BshVI	ATCGAT	1 cut(s)	252
BsiEI	CGRYCG	2 cut(s)	93, 593
BsiHKCI	CYCGRG	4 cut(s)	40, 100, 611, 627
BsiSI	CCGG	4 cut(s)	101, 196, 593, 703
BslFI	GGGAC	1 cut(s)	481
BslI	CCNNNNNNNGG	2 cut(s)	406, 465
BsmAI	GTCTC	3 cut(s)	43, 186, 693
BsmBI	CGTCTC	1 cut(s)	186
BsmFI	GGGAC	1 cut(s)	481
BsnI	GGCC	5 cut(s)	5, 592, 706, 749, 792
Bso31I	GGTCTC	1 cut(s)	693
BsoBI	CYCGRG	4 cut(s)	40, 100, 611, 627
Bsp143I	GATC	5 cut(s)	66, 249, 283, 460, 498
Bsp68I	TCGCGA	2 cut(s)	679, 783
BspACI	CCGC	3 cut(s)	720, 735, 750
BspANI	GGCC	5 cut(s)	5, 592, 706, 749, 792
BspCNI	CTCAG	1 cut(s)	657
BspDI	ATCGAT	1 cut(s)	252
BspFNI	CGCG	7 cut(s)	579, 679, 688, 722, 737, 752, 783
BspLI	GGNNCC	2 cut(s)	297, 343
BspTNI	GGTCTC	1 cut(s)	693
BsrFI	RCCGGY	2 cut(s)	592, 702
BsrI	ACTGG	1 cut(s)	120
BssAI	RCCGGY	2 cut(s)	592, 702
BssECI	CCNNGG	2 cut(s)	100, 101
BssMI	GATC	5 cut(s)	66, 249, 283, 460, 498
BssNI	GRCGYC	1 cut(s)	179
BssSI	CACGAG	2 cut(s)	664, 708
Bst2BI	CACGAG	2 cut(s)	664, 708
Bst4CI	ACNGT	2 cut(s)	94, 168
Bst6I	CTCTTC	1 cut(s)	240
BstACI	GRCGYC	1 cut(s)	179
BstC8I	GCNNGC	1 cut(s)	754
BstDEI	CTNAG	1 cut(s)	644
BstFNI	CGCG	7 cut(s)	579, 679, 688, 722, 737, 752, 783
BstKTI	GATC	5 cut(s)	69, 252, 286, 463, 501
BstMAI	GTCTC	3 cut(s)	43, 186, 693
BstMBI	GATC	5 cut(s)	66, 249, 283, 460, 498
BstMCI	CGRYCG	2 cut(s)	93, 593
BstMWI	GCNNNNNNNGC	4 cut(s)	105, 613, 685, 789
BstSCI	CCNGG	3 cut(s)	99, 100, 194
BstUI	CGCG	7 cut(s)	579, 679, 688, 722, 737, 752, 783
BstV1I	GCAGC	3 cut(s)	370, 619, 649
BstXI	CCANNNNNNTGG	1 cut(s)	81
BstZI	CGGCCG	1 cut(s)	590
Bsu15I	ATCGAT	1 cut(s)	252
BsuRI	GGCC	5 cut(s)	5, 592, 706, 749, 792
BsuTUI	ATCGAT	1 cut(s)	252
BtuMI	TCGCGA	2 cut(s)	679, 783
Cac8I	GCNNGC	1 cut(s)	754
Cfr10I	RCCGGY	2 cut(s)	592, 702
Cfr13I	GGNCC	1 cut(s)	4
Cfr9I	CCCGGG	1 cut(s)	100
ClaI	ATCGAT	1 cut(s)	252
CseI	GACGC	4 cut(s)	168, 585, 663, 694
CviAII	CATG	4 cut(s)	109, 427, 439, 502
DdeI	CTNAG	1 cut(s)	644
DpnI	GATC	5 cut(s)	68, 251, 285, 462, 500
DpnII	GATC	5 cut(s)	66, 249, 283, 460, 498
EaeI	YGGCCR	3 cut(s)	590, 704, 747
EagI	CGGCCG	1 cut(s)	590
Eam1104I	CTCTTC	1 cut(s)	240
EarI	CTCTTC	1 cut(s)	240
EclXI	CGGCCG	1 cut(s)	590
Eco31I	GGTCTC	1 cut(s)	693
Eco32I	GATATC	1 cut(s)	587
Eco52I	CGGCCG	1 cut(s)	590
Eco88I	CYCGRG	4 cut(s)	40, 100, 611, 627
EcoRI	GAATTC	1 cut(s)	618
EcoRV	GATATC	1 cut(s)	587
Esp3I	CGTCTC	1 cut(s)	186
FaeI	CATG	4 cut(s)	112, 430, 442, 505
FalI	AAGNNNNNCTT	2 cut(s)	447, 479
FaqI	GGGAC	1 cut(s)	481
FatI	CATG	4 cut(s)	108, 426, 438, 501
FauNDI	CATATG	1 cut(s)	354
Fnu4HI	GCNGC	4 cut(s)	359, 608, 638, 750
Fsp4HI	GCNGC	4 cut(s)	359, 608, 638, 750
FspBI	CTAG	1 cut(s)	417
GluI	GCNGC	4 cut(s)	359, 608, 638, 750
HaeIII	GGCC	5 cut(s)	5, 592, 706, 749, 792
HapII	CCGG	4 cut(s)	101, 196, 593, 703
HgaI	GACGC	4 cut(s)	168, 585, 663, 694
Hin1I	GRCGYC	1 cut(s)	179
Hin1II	CATG	4 cut(s)	112, 430, 442, 505
HincII	GTYRAC	1 cut(s)	512
HindII	GTYRAC	1 cut(s)	512
HinfI	GANTC	2 cut(s)	254, 272
HpaII	CCGG	4 cut(s)	101, 196, 593, 703
HphI	GGTGA	2 cut(s)	281, 607
Hpy166II	GTNNAC	1 cut(s)	512
Hpy188III	TCNNGA	7 cut(s)	23, 40, 417, 664, 678, 698, 782
Hpy8I	GTNNAC	1 cut(s)	512
Hpy99I	CGWCG	2 cut(s)	579, 679
HpyAV	CCTTC	3 cut(s)	555, 675, 779
HpyCH4III	ACNGT	2 cut(s)	94, 168
HpyCH4V	TGCA	4 cut(s)	139, 358, 490, 637
HpyF10VI	GCNNNNNNNGC	4 cut(s)	105, 613, 685, 789
HpyF3I	CTNAG	1 cut(s)	644
Hsp92I	GRCGYC	1 cut(s)	179
Hsp92II	CATG	4 cut(s)	112, 430, 442, 505
Kzo9I	GATC	5 cut(s)	66, 249, 283, 460, 498
LmnI	GCTCC	1 cut(s)	295
LpnPI	CCDG	8 cut(s)	114, 133, 209, 277, 606, 636, 716, 749
Lsp1109I	GCAGC	3 cut(s)	370, 619, 649
LweI	GCATC	1 cut(s)	181
MaeI	CTAG	1 cut(s)	417
MaeIII	GTNAC	1 cut(s)	715
MalI	GATC	5 cut(s)	68, 251, 285, 462, 500
MboI	GATC	5 cut(s)	66, 249, 283, 460, 498
MboII	GAAGA	7 cut(s)	11, 254, 257, 508, 554, 610, 780
MfeI	CAATTG	1 cut(s)	491
MnlI	CCTC	7 cut(s)	203, 659, 669, 683, 704, 736, 782
MseI	TTAA	2 cut(s)	332, 387
MslI	CAYNNNNRTG	1 cut(s)	12
MspI	CCGG	4 cut(s)	101, 196, 593, 703
MspR9I	CCNGG	3 cut(s)	101, 102, 196
MunI	CAATTG	1 cut(s)	491
MvnI	CGCG	7 cut(s)	579, 679, 688, 722, 737, 752, 783
MwoI	GCNNNNNNNGC	4 cut(s)	105, 613, 685, 789
NciI	CCSGG	3 cut(s)	101, 102, 196
NdeI	CATATG	1 cut(s)	354
NdeII	GATC	5 cut(s)	66, 249, 283, 460, 498
NlaIII	CATG	4 cut(s)	112, 430, 442, 505
NlaIV	GGNNCC	2 cut(s)	297, 343
NmuCI	GTSAC	1 cut(s)	715
NruI	TCGCGA	2 cut(s)	679, 783
OliI	CACNNNNGTG	1 cut(s)	12
PaeR7I	CTCGAG	2 cut(s)	40, 627
PcsI	WCGNNNNNNNCGW	2 cut(s)	662, 671
PfeI	GAWTC	2 cut(s)	254, 272
PflMI	CCANNNNNTGG	1 cut(s)	406
PkrI	GCNGC	4 cut(s)	360, 609, 639, 751
PspN4I	GGNNCC	2 cut(s)	297, 343
PspPI	GGNCC	1 cut(s)	4
PspXI	VCTCGAGB	1 cut(s)	627
RruI	TCGCGA	2 cut(s)	679, 783
RseI	CAYNNNNRTG	1 cut(s)	12
SaqAI	TTAA	2 cut(s)	332, 387
SatI	GCNGC	4 cut(s)	359, 608, 638, 750
Sau3AI	GATC	5 cut(s)	66, 249, 283, 460, 498
Sau96I	GGNCC	1 cut(s)	4
ScrFI	CCNGG	3 cut(s)	101, 102, 196
SetI	ASST	5 cut(s)	612, 628, 634, 642, 747
SfaNI	GCATC	1 cut(s)	181
Sfr274I	CTCGAG	2 cut(s)	40, 627
SlaI	CTCGAG	2 cut(s)	40, 627
SmaI	CCCGGG	1 cut(s)	102
SmiMI	CAYNNNNRTG	1 cut(s)	12
SmlI	CTYRAG	2 cut(s)	40, 627
SmoI	CTYRAG	2 cut(s)	40, 627
SsiI	CCGC	3 cut(s)	720, 735, 750
SspI	AATATT	3 cut(s)	50, 222, 538
SspMI	CTAG	1 cut(s)	417
StyD4I	CCNGG	3 cut(s)	99, 100, 194
TaaI	ACNGT	2 cut(s)	94, 168
TaqI	TCGA	6 cut(s)	24, 41, 252, 574, 628, 697
TauI	GCSGC	1 cut(s)	752
TfiI	GAWTC	2 cut(s)	254, 272
Tru1I	TTAA	2 cut(s)	332, 387
Tru9I	TTAA	2 cut(s)	332, 387
TseFI	GTSAC	1 cut(s)	715
TseI	GCWGC	3 cut(s)	358, 607, 637
Tsp45I	GTSAC	1 cut(s)	715
TspDTI	ATGAA	2 cut(s)	246, 324
TspMI	CCCGGG	1 cut(s)	100
Van91I	CCANNNNNTGG	1 cut(s)	406
XapI	RAATTY	5 cut(s)	130, 146, 262, 368, 618
XbaI	TCTAGA	1 cut(s)	416
XhoI	CTCGAG	2 cut(s)	40, 627
XmaI	CCCGGG	1 cut(s)	100
XspI	CTAG	1 cut(s)	417

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.