Basic Information

Type: gene

Biological Identity

Species

rosa_roxburghii

Chromosome

GWHEROQ00000001

Orthogroup ID

OG0000314

Physical Location & Seq

Genomic Coordinates Forward (+)

82797393 .. 82799199

Gene Structure 1807 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Rroxscaffold_1G00060570.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1125 bp

ATGACCAATGTTGCCACCATTGGCGACACTACGACAAGAGAGGCTTTCATTACGAAGCCTATTCTAGAGGGAACGACCTCCGAGGTAAGGTTCGCGATCATCATGGAGAATATTGAAAATCATCGCAAGAAGATAGCCGCCGACTTTGACGGGGAAACCGCGAAGGCAAACCAGCTCATACGCGAATTGGACGAGTGTATCGCCCAACGGATCGAGGATACCATCGCGAACCAAAACAAGCGAGACCTCGTCGAGTTCGCAACCTTGCGCAAAGAAGGTTCCGGCTTGGTTACTCAAGTCAATTCGCATCAAAGTGAATTGGAAAATCAAGAAGCCGCAAGCAAATATGGTGTTTACGAGATTGAATTGCCTATAGGAGGCGATCAATCTAAAGGCAAAAACCTTCCTCTCAACCAACTAGTCGCGAAGAGGAAAGTAGCATGCCTATTGTTGAATCAAAGCCTTATACGGAGGTCGTACAGGGAGAAGATGGCCCACAAGAGTGTTCTTCTTACAAGAAAGTTGTCTCGGAGCAAATATTTCACTTCTCCACCGATCAAGCCAAATATGTGGCTACCGACCGGATGCTGGGGGCATGATATTGCCCAGGAGTACAAGTCTTTTGAAGCTCTTGATATGGAGAATTTTGACCAACAAGTGGTTAAATGCAAAAGCCAATCTGTGGCTTCTTTTGAAGACACCATGTTCTATGACATGGTAGTTGGCGACAAAGCCGATCTTGGGACACCATCATCTCCAAAATTGCAATTGAAGATCATGCTTAGTCAACCAACAAAGATACTTGGGGGGCAATATTACTCTTTCTACGAGCCAAATTTCTTCCAAGTTTTTGACGCGAAATATCTTTGTTCCTTTCCTGCAAGCCCTCACAAGAGAGGTTTTCATGCTATAAATTTTGATGCATCGGAGCTTGGAGTGAAGCATAGGTGGCCTCCCTGTGGCCTTCTAGAGTTAGGAAAAGAAAAATACAAAAAGAATTTTAAGTTTGTGCATCGCGGAGGATGTAGAAAATTGTGTTCTTGCCTAACAATTAATGGCCTGAACTTTCTGATATACTTAGAGGCCATTGGTTTTGGCTTGGGCACATATACAAGAGGCATTTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003676 GO:0003723 GO:0003824 GO:0004652 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005829 GO:0006139 GO:0006276 GO:0006378 GO:0006396 GO:0006397 GO:0006725 GO:0006807 GO:0008150 GO:0008152 GO:0009451 GO:0009987 GO:0010467 GO:0016070 GO:0016071 GO:0016740 GO:0016772 GO:0016779 GO:0031123 GO:0031124 GO:0034641 GO:0043170 GO:0043412 GO:0043631 GO:0044237 GO:0044238 GO:0044424 GO:0044444 GO:0044464 GO:0046483 GO:0070566 GO:0071704 GO:0090304 GO:0097159 GO:1901360 GO:1901363

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

PolyA_pol PolyA_pol_RNAbd

Protein Analysis

374

Amino Acids

42.28

Weight (kDa)

8.88

Isoelectric Point (pI)

43.15

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0000314)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_1g02272 FvH4_1g22661 FvH4_2g10242 FvH4_2g34051 FvH4_3g19221 FvH4_3g29651 FvH4_3g30891 FvH4_4g11061 FvH4_5g09250 FvH4_5g15302 FvH4_5g15303 FvH4_5g15304 FvH4_5g28521 FvH4_6g23591 FvH4_7g05710 FvH4_7g19520
pyrus_communis	pycom07g06330
rosa_chinensis	RchiOBHm_Chr5g0027301 RchiOBHm_Chr6g0251451 RchiOBHm_Chr6g0274861
rosa_laevigata	RLG00000007850
rosa_multiflora	Rmu_co8230721.1_g000001 Rmu_sc0000271.1_g000027 Rmu_sc0000303.1_g000024 Rmu_sc0000368.1_g000024 Rmu_sc0000621.1_g000037 Rmu_sc0000693.1_g000081 Rmu_sc0001229.1_g000006 Rmu_sc0001373.1_g000003 Rmu_sc0001459.1_g000001 Rmu_sc0001744.1_g000002 Rmu_sc0001909.1_g000002 Rmu_sc0002053.1_g000012 Rmu_sc0002060.1_g000015 Rmu_sc0002119.1_g000036 Rmu_sc0002177.1_g000007 Rmu_sc0002822.1_g000024 Rmu_sc0002965.1_g000015 Rmu_sc0003363.1_g000051 Rmu_sc0003500.1_g000013 Rmu_sc0004191.1_g000020 Rmu_sc0004904.1_g000032 Rmu_sc0005325.1_g000008 Rmu_sc0005947.1_g000040 Rmu_sc0006475.1_g000001 Rmu_sc0006522.1_g000019 Rmu_sc0007102.1_g000005 Rmu_sc0007810.1_g000003 Rmu_sc0008339.1_g000025 Rmu_sc0008698.1_g000004 Rmu_sc0009313.1_g000006 Rmu_sc0009850.1_g000006 Rmu_sc0010598.1_g000003 Rmu_sc0011162.1_g000002 Rmu_sc0011824.1_g000004 Rmu_sc0011900.1_g000010 Rmu_sc0012291.1_g000006 Rmu_sc0012619.1_g000003 Rmu_sc0014679.1_g000001 Rmu_sc0019053.1_g000001 Rmu_sc0021462.1_g000003 Rmu_sc0024172.1_g000001 Rmu_sc0024173.1_g000001 Rmu_ssc0000052.1_g000016 Rmu_ssc0000392.1_g000010 Rmu_ssc0000421.1_g000062 Rmu_ssc0000479.1_g000006
rosa_roxburghii	Rroxscaffold_153G00436600 Rroxscaffold_1G00008580 Rroxscaffold_1G00016770 Rroxscaffold_1G00029550 Rroxscaffold_1G00036450 Rroxscaffold_1G00040410 Rroxscaffold_1G00047110 Rroxscaffold_1G00060570 Rroxscaffold_2G00081500 Rroxscaffold_2G00081510 Rroxscaffold_2G00086080 Rroxscaffold_2G00099620 Rroxscaffold_2G00099630 Rroxscaffold_2G00099640 Rroxscaffold_2G00109170 Rroxscaffold_2G00127750 Rroxscaffold_2G00128590 Rroxscaffold_2G00130780 Rroxscaffold_2G00131040 Rroxscaffold_2G00143160 Rroxscaffold_3G00229280 Rroxscaffold_3G00229290 Rroxscaffold_3G00229970 Rroxscaffold_3G00242860 Rroxscaffold_3G00242890 Rroxscaffold_3G00242900 Rroxscaffold_3G00248200 Rroxscaffold_4G00284550 Rroxscaffold_4G00288780 Rroxscaffold_4G00298620 Rroxscaffold_4G00298630 Rroxscaffold_4G00312420 Rroxscaffold_4G00320310 Rroxscaffold_4G00322220 Rroxscaffold_4G00323600 Rroxscaffold_4G00331830 Rroxscaffold_4G00332010 Rroxscaffold_4G00332020 Rroxscaffold_5G00344470 Rroxscaffold_5G00345310 Rroxscaffold_5G00356120 Rroxscaffold_5G00368700 Rroxscaffold_5G00379820 Rroxscaffold_5G00382480 Rroxscaffold_6G00395080 Rroxscaffold_6G00405520 Rroxscaffold_6G00428210 Rroxscaffold_7G00193460
rosa_samantha	Rh7CG413200 Rh7DG284900

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc16I	TGCGCA	1 cut(s)	269
AccB7I	CCANNNNNTGG	2 cut(s)	658, 682
AccII	CGCG	7 cut(s)	95, 161, 183, 227, 425, 857, 1017
AciI	CCGC	4 cut(s)	138, 159, 336, 1017
AclWI	GGATC	1 cut(s)	218
AcsI	RAATTY	4 cut(s)	643, 835, 913, 997
AfaI	GTAC	2 cut(s)	479, 614
AfiI	CCNNNNNNNGG	7 cut(s)	87, 377, 588, 658, 682, 741, 959
AgsI	TTSAA	6 cut(s)	116, 365, 454, 626, 695, 772
AhlI	ACTAGT	1 cut(s)	418
AjnI	CCWGG	1 cut(s)	606
AleI	CACNNNNGTG	1 cut(s)	501
AluBI	AGCT	3 cut(s)	175, 629, 931
AluI	AGCT	3 cut(s)	175, 629, 931
Alw26I	GTCTC	2 cut(s)	237, 531
AlwI	GGATC	1 cut(s)	218
AoxI	GGCC	5 cut(s)	492, 950, 961, 1057, 1083
ApoI	RAATTY	4 cut(s)	643, 835, 913, 997
AseI	ATTAAT	1 cut(s)	1053
AspLEI	GCGC	1 cut(s)	270
AspS9I	GGNCC	1 cut(s)	493
BaeGI	GKGCMC	1 cut(s)	1106
BaeI	ACNNNNGTAYC	2 cut(s)	181, 214
BbsI	GAAGAC	1 cut(s)	702
BccI	CCATC	3 cut(s)	230, 484, 757
BciT130I	CCWGG	1 cut(s)	608
BciVI	GTATCC	1 cut(s)	211
BcoDI	GTCTC	2 cut(s)	237, 531
BcuI	ACTAGT	1 cut(s)	418
BfaI	CTAG	3 cut(s)	65, 419, 968
BfmI	CTRYAG	1 cut(s)	372
BfuI	GTATCC	1 cut(s)	211
BisI	GCNGC	2 cut(s)	138, 336
BlsI	GCNGC	2 cut(s)	139, 337
Bme1390I	CCNGG	1 cut(s)	608
BmgT120I	GGNCC	1 cut(s)	493
BmiI	GGNNCC	1 cut(s)	280
BmrFI	CCNGG	1 cut(s)	608
BmsI	GCATC	5 cut(s)	316, 575, 910, 932, 1021
BpiI	GAAGAC	1 cut(s)	702
BpuEI	CTTGAG	1 cut(s)	279
BsaI	GGTCTC	1 cut(s)	237
BsaJI	CCNNGG	2 cut(s)	81, 606
BsaWI	WCCGGW	1 cut(s)	581
BsaXI	ACNNNNNCTCC	2 cut(s)	602, 632
Bsc4I	CCNNNNNNNGG	7 cut(s)	87, 377, 588, 658, 682, 741, 959
BseBI	CCWGG	1 cut(s)	608
BseDI	CCNNGG	2 cut(s)	81, 606
BseGI	GGATG	2 cut(s)	590, 1028
BseLI	CCNNNNNNNGG	7 cut(s)	87, 377, 588, 658, 682, 741, 959
BseSI	GKGCMC	1 cut(s)	1106
BseYI	CCCAGC	1 cut(s)	588
Bsh1236I	CGCG	7 cut(s)	95, 161, 183, 227, 425, 857, 1017
Bsh1285I	CGRYCG	1 cut(s)	582
BshFI	GGCC	5 cut(s)	494, 952, 963, 1059, 1085
BsiEI	CGRYCG	1 cut(s)	582
BsiSI	CCGG	2 cut(s)	282, 582
BslFI	GGGAC	1 cut(s)	757
BslI	CCNNNNNNNGG	7 cut(s)	87, 377, 588, 658, 682, 741, 959
BsmAI	GTCTC	2 cut(s)	237, 531
BsmFI	GGGAC	1 cut(s)	757
BsnI	GGCC	5 cut(s)	494, 952, 963, 1059, 1085
Bso31I	GGTCTC	1 cut(s)	237
Bsp1286I	GDGCHC	1 cut(s)	1106
Bsp143I	GATC	6 cut(s)	96, 210, 382, 555, 736, 774
Bsp68I	TCGCGA	3 cut(s)	95, 227, 425
BspACI	CCGC	4 cut(s)	138, 159, 336, 1017
BspANI	GGCC	5 cut(s)	494, 952, 963, 1059, 1085
BspFNI	CGCG	7 cut(s)	95, 161, 183, 227, 425, 857, 1017
BspLI	GGNNCC	1 cut(s)	280
BspPI	GGATC	1 cut(s)	218
BspTNI	GGTCTC	1 cut(s)	237
BssECI	CCNNGG	2 cut(s)	81, 606
BssMI	GATC	6 cut(s)	96, 210, 382, 555, 736, 774
Bst2UI	CCWGG	1 cut(s)	608
Bst6I	CTCTTC	1 cut(s)	422
BstC8I	GCNNGC	3 cut(s)	340, 442, 883
BstDEI	CTNAG	2 cut(s)	782, 1078
BstENI	CCTNNNNNAGG	1 cut(s)	375
BstF5I	GGATG	2 cut(s)	590, 1028
BstFNI	CGCG	7 cut(s)	95, 161, 183, 227, 425, 857, 1017
BstHHI	GCGC	1 cut(s)	270
BstKTI	GATC	6 cut(s)	99, 213, 385, 558, 739, 777
BstMAI	GTCTC	2 cut(s)	237, 531
BstMBI	GATC	6 cut(s)	96, 210, 382, 555, 736, 774
BstMCI	CGRYCG	1 cut(s)	582
BstMWI	GCNNNNNNNGC	1 cut(s)	949
BstNI	CCWGG	1 cut(s)	608
BstNSI	RCATGY	1 cut(s)	444
BstSCI	CCNGG	1 cut(s)	606
BstSFI	CTRYAG	1 cut(s)	372
BstSLI	GKGCMC	1 cut(s)	1106
BstUI	CGCG	7 cut(s)	95, 161, 183, 227, 425, 857, 1017
BstV2I	GAAGAC	1 cut(s)	702
BstXI	CCANNNNNNTGG	1 cut(s)	570
BsuI	GTATCC	1 cut(s)	211
BsuRI	GGCC	5 cut(s)	494, 952, 963, 1059, 1085
BtgZI	GCGATG	3 cut(s)	107, 208, 998
BtsCI	GGATG	2 cut(s)	590, 1028
BtuMI	TCGCGA	3 cut(s)	95, 227, 425
Cac8I	GCNNGC	3 cut(s)	340, 442, 883
CfoI	GCGC	1 cut(s)	270
Cfr13I	GGNCC	1 cut(s)	493
CseI	GACGC	1 cut(s)	863
Csp6I	GTAC	2 cut(s)	478, 613
CviAII	CATG	7 cut(s)	103, 441, 596, 703, 715, 778, 905
CviQI	GTAC	2 cut(s)	478, 613
DdeI	CTNAG	2 cut(s)	782, 1078
DpnI	GATC	6 cut(s)	98, 212, 384, 557, 738, 776
DpnII	GATC	6 cut(s)	96, 210, 382, 555, 736, 774
Eam1104I	CTCTTC	1 cut(s)	422
EarI	CTCTTC	1 cut(s)	422
Eco31I	GGTCTC	1 cut(s)	237
EcoNI	CCTNNNNNAGG	1 cut(s)	375
EcoRII	CCWGG	1 cut(s)	606
EcoT22I	ATGCAT	1 cut(s)	925
FaeI	CATG	7 cut(s)	106, 444, 599, 706, 718, 781, 908
FalI	AAGNNNNNCTT	4 cut(s)	28, 60, 723, 755
FaqI	GGGAC	1 cut(s)	757
FatI	CATG	7 cut(s)	102, 440, 595, 702, 714, 777, 904
Fnu4HI	GCNGC	2 cut(s)	138, 336
FokI	GGATG	2 cut(s)	597, 1035
Fsp4HI	GCNGC	2 cut(s)	138, 336
FspBI	CTAG	3 cut(s)	65, 419, 968
FspI	TGCGCA	1 cut(s)	269
GlaI	GCGC	1 cut(s)	269
GluI	GCNGC	2 cut(s)	138, 336
GsaI	CCCAGC	1 cut(s)	592
HaeIII	GGCC	5 cut(s)	494, 952, 963, 1059, 1085
HapII	CCGG	2 cut(s)	282, 582
HgaI	GACGC	1 cut(s)	863
HhaI	GCGC	1 cut(s)	270
Hin1II	CATG	7 cut(s)	106, 444, 599, 706, 718, 781, 908
Hin6I	GCGC	1 cut(s)	268
HinP1I	GCGC	1 cut(s)	268
HincII	GTYRAC	1 cut(s)	788
HindII	GTYRAC	1 cut(s)	788
HinfI	GANTC	1 cut(s)	454
HpaII	CCGG	2 cut(s)	282, 582
Hpy166II	GTNNAC	2 cut(s)	355, 788
Hpy188I	TCNGA	4 cut(s)	82, 531, 928, 1071
Hpy188III	TCNNGA	7 cut(s)	65, 94, 226, 329, 424, 632, 968
Hpy8I	GTNNAC	2 cut(s)	355, 788
Hpy99I	CGWCG	1 cut(s)	254
HpyAV	CCTTC	4 cut(s)	157, 269, 413, 974
HpyCH4V	TGCA	5 cut(s)	669, 766, 881, 923, 1012
HpyF10VI	GCNNNNNNNGC	1 cut(s)	949
HpyF3I	CTNAG	2 cut(s)	782, 1078
Hsp92II	CATG	7 cut(s)	106, 444, 599, 706, 718, 781, 908
HspAI	GCGC	1 cut(s)	268
Kzo9I	GATC	6 cut(s)	96, 210, 382, 555, 736, 774
LmnI	GCTCC	2 cut(s)	531, 928
LweI	GCATC	5 cut(s)	316, 575, 910, 932, 1021
MaeI	CTAG	3 cut(s)	65, 419, 968
MaeIII	GTNAC	1 cut(s)	289
MalI	GATC	6 cut(s)	98, 212, 384, 557, 738, 776
MboI	GATC	6 cut(s)	96, 210, 382, 555, 736, 774
MboII	GAAGA	7 cut(s)	142, 439, 499, 500, 707, 784, 832
MfeI	CAATTG	1 cut(s)	767
MhlI	GDGCHC	1 cut(s)	1106
Mph1103I	ATGCAT	1 cut(s)	925
MseI	TTAA	4 cut(s)	663, 1002, 1053, 1123
MslI	CAYNNNNRTG	2 cut(s)	312, 501
MspI	CCGG	2 cut(s)	282, 582
MspR9I	CCNGG	1 cut(s)	608
MunI	CAATTG	1 cut(s)	767
MvaI	CCWGG	1 cut(s)	608
MvnI	CGCG	7 cut(s)	95, 161, 183, 227, 425, 857, 1017
MwoI	GCNNNNNNNGC	1 cut(s)	949
NdeII	GATC	6 cut(s)	96, 210, 382, 555, 736, 774
NlaIII	CATG	7 cut(s)	106, 444, 599, 706, 718, 781, 908
NlaIV	GGNNCC	1 cut(s)	280
NruI	TCGCGA	3 cut(s)	95, 227, 425
NsbI	TGCGCA	1 cut(s)	269
NsiI	ATGCAT	1 cut(s)	925
NspI	RCATGY	1 cut(s)	444
OliI	CACNNNNGTG	1 cut(s)	501
PaeI	GCATGC	1 cut(s)	444
PfeI	GAWTC	1 cut(s)	454
PflFI	GACNNNGTC	1 cut(s)	248
PflMI	CCANNNNNTGG	2 cut(s)	658, 682
PkrI	GCNGC	2 cut(s)	139, 337
PshBI	ATTAAT	1 cut(s)	1053
Psp6I	CCWGG	1 cut(s)	606
PspFI	CCCAGC	1 cut(s)	588
PspGI	CCWGG	1 cut(s)	606
PspN4I	GGNNCC	1 cut(s)	280
PspPI	GGNCC	1 cut(s)	493
PsyI	GACNNNGTC	1 cut(s)	248
RruI	TCGCGA	3 cut(s)	95, 227, 425
RsaI	GTAC	2 cut(s)	479, 614
RsaNI	GTAC	2 cut(s)	478, 613
RseI	CAYNNNNRTG	2 cut(s)	312, 501
SaqAI	TTAA	4 cut(s)	663, 1002, 1053, 1123
SatI	GCNGC	2 cut(s)	138, 336
Sau3AI	GATC	6 cut(s)	96, 210, 382, 555, 736, 774
Sau96I	GGNCC	1 cut(s)	493
ScrFI	CCNGG	1 cut(s)	608
SduI	GDGCHC	1 cut(s)	1106
SfaNI	GCATC	5 cut(s)	316, 575, 910, 932, 1021
SfcI	CTRYAG	1 cut(s)	372
SmiMI	CAYNNNNRTG	2 cut(s)	312, 501
SmlI	CTYRAG	1 cut(s)	294
SmoI	CTYRAG	1 cut(s)	294
SpeI	ACTAGT	1 cut(s)	418
SphI	GCATGC	1 cut(s)	444
SsiI	CCGC	4 cut(s)	138, 159, 336, 1017
SspI	AATATT	3 cut(s)	112, 539, 815
SspMI	CTAG	3 cut(s)	65, 419, 968
StyD4I	CCNGG	1 cut(s)	606
TaqI	TCGA	2 cut(s)	213, 252
TatI	WGTACW	1 cut(s)	612
TauI	GCSGC	2 cut(s)	140, 338
TfiI	GAWTC	1 cut(s)	454
Tru1I	TTAA	4 cut(s)	663, 1002, 1053, 1123
Tru9I	TTAA	4 cut(s)	663, 1002, 1053, 1123
TspDTI	ATGAA	2 cut(s)	37, 893
TspGWI	ACGGA	2 cut(s)	223, 484
Tth111I	GACNNNGTC	1 cut(s)	248
Van91I	CCANNNNNTGG	2 cut(s)	658, 682
VspI	ATTAAT	1 cut(s)	1053
XagI	CCTNNNNNAGG	1 cut(s)	375
XapI	RAATTY	4 cut(s)	643, 835, 913, 997
XbaI	TCTAGA	2 cut(s)	64, 967
XceI	RCATGY	1 cut(s)	444
XspI	CTAG	3 cut(s)	65, 419, 968
Zsp2I	ATGCAT	1 cut(s)	925

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.