Rroxscaffold_2G00099640

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_roxburghii
GWHEROQ00000002
OG0000314
Physical Location & Seq
Reverse (-)
21388906 .. 21394778
5873 bp
Loading structure...
UTR
Exon/CDS
Intron
Rroxscaffold_2G00099640.1

Sequence Viewer

Length: 327 bp
ATGGAGGATGTCCAGGAGCAGCAAAGTGAATCACTTGGAAAATCTTTACCAAAAGAAATTCCCGAAGTCATGGCAACGATAGAAGGCTATGTGTCCATTCCCATTCCGGAGAATGCGAGCATAGAAGAGCGGCTTGATATCCTTCAAAAGAATTCTACCGCATACCATGAGAATGCGAGAAAAGCCCTCGCGGAGGACCGTCGACGGCTCGATGAGTTCATGATTTCGGTCACGAGGCTCGAGTTGGGGACACAACAAACACAAGGCGAATTGGAACGTCAAGAACCTGCTCGCGAAGAGGTTGTTTCGAGACTAACTTGCCTATAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

108

Amino Acids

12.34

Weight (kDa)

4.63

Isoelectric Point (pI)

70.86

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0000314)

Species Orthologous Gene IDs
fragaria_vesca FvH4_1g02272 FvH4_1g22661 FvH4_2g10242 FvH4_2g34051 FvH4_3g19221 FvH4_3g29651 FvH4_3g30891 FvH4_4g11061 FvH4_5g09250 FvH4_5g15302 FvH4_5g15303 FvH4_5g15304 FvH4_5g28521 FvH4_6g23591 FvH4_7g05710 FvH4_7g19520
pyrus_communis pycom07g06330
rosa_chinensis RchiOBHm_Chr5g0027301 RchiOBHm_Chr6g0251451 RchiOBHm_Chr6g0274861
rosa_laevigata RLG00000007850
rosa_multiflora Rmu_co8230721.1_g000001 Rmu_sc0000271.1_g000027 Rmu_sc0000303.1_g000024 Rmu_sc0000368.1_g000024 Rmu_sc0000621.1_g000037 Rmu_sc0000693.1_g000081 Rmu_sc0001229.1_g000006 Rmu_sc0001373.1_g000003 Rmu_sc0001459.1_g000001 Rmu_sc0001744.1_g000002 Rmu_sc0001909.1_g000002 Rmu_sc0002053.1_g000012 Rmu_sc0002060.1_g000015 Rmu_sc0002119.1_g000036 Rmu_sc0002177.1_g000007 Rmu_sc0002822.1_g000024 Rmu_sc0002965.1_g000015 Rmu_sc0003363.1_g000051 Rmu_sc0003500.1_g000013 Rmu_sc0004191.1_g000020 Rmu_sc0004904.1_g000032 Rmu_sc0005325.1_g000008 Rmu_sc0005947.1_g000040 Rmu_sc0006475.1_g000001 Rmu_sc0006522.1_g000019 Rmu_sc0007102.1_g000005 Rmu_sc0007810.1_g000003 Rmu_sc0008339.1_g000025 Rmu_sc0008698.1_g000004 Rmu_sc0009313.1_g000006 Rmu_sc0009850.1_g000006 Rmu_sc0010598.1_g000003 Rmu_sc0011162.1_g000002 Rmu_sc0011824.1_g000004 Rmu_sc0011900.1_g000010 Rmu_sc0012291.1_g000006 Rmu_sc0012619.1_g000003 Rmu_sc0014679.1_g000001 Rmu_sc0019053.1_g000001 Rmu_sc0021462.1_g000003 Rmu_sc0024172.1_g000001 Rmu_sc0024173.1_g000001 Rmu_ssc0000052.1_g000016 Rmu_ssc0000392.1_g000010 Rmu_ssc0000421.1_g000062 Rmu_ssc0000479.1_g000006
rosa_roxburghii Rroxscaffold_153G00436600 Rroxscaffold_1G00008580 Rroxscaffold_1G00016770 Rroxscaffold_1G00029550 Rroxscaffold_1G00036450 Rroxscaffold_1G00040410 Rroxscaffold_1G00047110 Rroxscaffold_1G00060570 Rroxscaffold_2G00081500 Rroxscaffold_2G00081510 Rroxscaffold_2G00086080 Rroxscaffold_2G00099620 Rroxscaffold_2G00099630 Rroxscaffold_2G00099640 Rroxscaffold_2G00109170 Rroxscaffold_2G00127750 Rroxscaffold_2G00128590 Rroxscaffold_2G00130780 Rroxscaffold_2G00131040 Rroxscaffold_2G00143160 Rroxscaffold_3G00229280 Rroxscaffold_3G00229290 Rroxscaffold_3G00229970 Rroxscaffold_3G00242860 Rroxscaffold_3G00242890 Rroxscaffold_3G00242900 Rroxscaffold_3G00248200 Rroxscaffold_4G00284550 Rroxscaffold_4G00288780 Rroxscaffold_4G00298620 Rroxscaffold_4G00298630 Rroxscaffold_4G00312420 Rroxscaffold_4G00320310 Rroxscaffold_4G00322220 Rroxscaffold_4G00323600 Rroxscaffold_4G00331830 Rroxscaffold_4G00332010 Rroxscaffold_4G00332020 Rroxscaffold_5G00344470 Rroxscaffold_5G00345310 Rroxscaffold_5G00356120 Rroxscaffold_5G00368700 Rroxscaffold_5G00379820 Rroxscaffold_5G00382480 Rroxscaffold_6G00395080 Rroxscaffold_6G00405520 Rroxscaffold_6G00428210 Rroxscaffold_7G00193460
rosa_samantha Rh7CG413200 Rh7DG284900

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc36I ACCTGC 1 cut(s) 295
AccBSI CCGCTC 1 cut(s) 130
AccI GTMKAC 1 cut(s) 202
AccII CGCG 2 cut(s) 191, 294
AccIII TCCGGA 1 cut(s) 106
AciI CCGC 3 cut(s) 130, 159, 191
AcsI RAATTY 2 cut(s) 57, 151
AfiI CCNNNNNNNGG 1 cut(s) 193
AgsI TTSAA 1 cut(s) 146
AjnI CCWGG 1 cut(s) 12
Alw26I GTCTC 1 cut(s) 304
Ama87I CYCGRG 1 cut(s) 239
Aor13HI TCCGGA 1 cut(s) 106
ApeKI GCWGC 1 cut(s) 19
ApoI RAATTY 2 cut(s) 57, 151
AspS9I GGNCC 1 cut(s) 196
AvaI CYCGRG 1 cut(s) 239
AvaII GGWCC 1 cut(s) 196
BauI CACGAG 1 cut(s) 232
BbvI GCAGC 1 cut(s) 31
BceAI ACGGC 1 cut(s) 221
BciT130I CCWGG 1 cut(s) 14
BcoDI GTCTC 1 cut(s) 304
BfmI CTRYAG 1 cut(s) 323
BfuAI ACCTGC 1 cut(s) 295
BisI GCNGC 2 cut(s) 20, 131
BlsI GCNGC 2 cut(s) 21, 132
Bme1390I CCNGG 1 cut(s) 14
Bme18I GGWCC 1 cut(s) 196
BmeT110I CYCGRG 1 cut(s) 239
BmgT120I GGNCC 1 cut(s) 196
BmrFI CCNGG 1 cut(s) 14
BsaWI WCCGGW 1 cut(s) 106
Bsc4I CCNNNNNNNGG 1 cut(s) 193
BseAI TCCGGA 1 cut(s) 106
BseBI CCWGG 1 cut(s) 14
BseGI GGATG 1 cut(s) 13
BseLI CCNNNNNNNGG 1 cut(s) 193
BseXI GCAGC 1 cut(s) 31
Bsh1236I CGCG 2 cut(s) 191, 294
BsiHKCI CYCGRG 1 cut(s) 239
BsiSI CCGG 1 cut(s) 107
BslFI GGGAC 1 cut(s) 262
BslI CCNNNNNNNGG 1 cut(s) 193
BsmAI GTCTC 1 cut(s) 304
BsmFI GGGAC 1 cut(s) 262
BsmI GAATGC 2 cut(s) 118, 178
BsoBI CYCGRG 1 cut(s) 239
Bsp13I TCCGGA 1 cut(s) 106
Bsp68I TCGCGA 1 cut(s) 294
BspACI CCGC 3 cut(s) 130, 159, 191
BspEI TCCGGA 1 cut(s) 106
BspFNI CGCG 2 cut(s) 191, 294
BspHI TCATGA 1 cut(s) 219
BspMI ACCTGC 1 cut(s) 295
BspQI GCTCTTC 1 cut(s) 120
BsrBI CCGCTC 1 cut(s) 130
BssSI CACGAG 1 cut(s) 232
Bst2BI CACGAG 1 cut(s) 232
Bst2UI CCWGG 1 cut(s) 14
Bst4CI ACNGT 1 cut(s) 200
Bst6I CTCTTC 2 cut(s) 120, 291
BstC8I GCNNGC 2 cut(s) 118, 292
BstENI CCTNNNNNAGG 1 cut(s) 191
BstF5I GGATG 1 cut(s) 13
BstFNI CGCG 2 cut(s) 191, 294
BstMAI GTCTC 1 cut(s) 304
BstMWI GCNNNNNNNGC 1 cut(s) 182
BstNI CCWGG 1 cut(s) 14
BstSCI CCNGG 1 cut(s) 12
BstSFI CTRYAG 1 cut(s) 323
BstUI CGCG 2 cut(s) 191, 294
BstV1I GCAGC 1 cut(s) 31
BtsCI GGATG 1 cut(s) 13
BtuMI TCGCGA 1 cut(s) 294
BveI ACCTGC 1 cut(s) 295
Cac8I GCNNGC 2 cut(s) 118, 292
CciI TCATGA 1 cut(s) 219
Cfr13I GGNCC 1 cut(s) 196
CviAII CATG 3 cut(s) 70, 167, 220
CviJI RGCY 5 cut(s) 87, 133, 185, 208, 238
CviKI_1 RGCY 5 cut(s) 87, 133, 185, 208, 238
Eam1104I CTCTTC 2 cut(s) 120, 291
EarI CTCTTC 2 cut(s) 120, 291
Eco32I GATATC 1 cut(s) 139
Eco47I GGWCC 1 cut(s) 196
Eco88I CYCGRG 1 cut(s) 239
EcoNI CCTNNNNNAGG 1 cut(s) 191
EcoRI GAATTC 1 cut(s) 151
EcoRII CCWGG 1 cut(s) 12
EcoRV GATATC 1 cut(s) 139
FaeI CATG 3 cut(s) 73, 170, 223
FaiI YATR 7 cut(s) 71, 90, 122, 163, 168, 221, 325
FalI AAGNNNNNCTT 2 cut(s) 117, 149
FaqI GGGAC 1 cut(s) 262
FatI CATG 3 cut(s) 69, 166, 219
FblI GTMKAC 1 cut(s) 202
Fnu4HI GCNGC 2 cut(s) 20, 131
FokI GGATG 1 cut(s) 20
Fsp4HI GCNGC 2 cut(s) 20, 131
GluI GCNGC 2 cut(s) 20, 131
HapII CCGG 1 cut(s) 107
Hin1II CATG 3 cut(s) 73, 170, 223
HincII GTYRAC 1 cut(s) 203
HindII GTYRAC 1 cut(s) 203
HinfI GANTC 1 cut(s) 29
HpaII CCGG 1 cut(s) 107
Hpy166II GTNNAC 1 cut(s) 203
Hpy188III TCNNGA 7 cut(s) 62, 107, 220, 232, 281, 293, 309
Hpy8I GTNNAC 1 cut(s) 203
Hpy99I CGWCG 2 cut(s) 204, 207
HpyAV CCTTC 2 cut(s) 77, 152
HpyCH4III ACNGT 1 cut(s) 200
HpyCH4IV ACGT 1 cut(s) 277
HpyF10VI GCNNNNNNNGC 1 cut(s) 182
HpySE526I ACGT 1 cut(s) 277
Hsp92II CATG 3 cut(s) 73, 170, 223
Kpn2I TCCGGA 1 cut(s) 106
LguI GCTCTTC 1 cut(s) 120
LmnI GCTCC 1 cut(s) 16
LpnPI CCDG 3 cut(s) 26, 120, 300
Lsp1109I GCAGC 1 cut(s) 31
MaeII ACGT 1 cut(s) 277
MaeIII GTNAC 1 cut(s) 229
MbiI CCGCTC 1 cut(s) 130
MboII GAAGA 2 cut(s) 137, 308
MluCI AATT 3 cut(s) 57, 151, 269
MnlI CCTC 4 cut(s) 187, 197, 228, 292
MroI TCCGGA 1 cut(s) 106
MslI CAYNNNNRTG 1 cut(s) 171
MspI CCGG 1 cut(s) 107
MspR9I CCNGG 1 cut(s) 14
Mva1269I GAATGC 2 cut(s) 118, 178
MvaI CCWGG 1 cut(s) 14
MvnI CGCG 2 cut(s) 191, 294
MwoI GCNNNNNNNGC 1 cut(s) 182
NlaIII CATG 3 cut(s) 73, 170, 223
NmuCI GTSAC 1 cut(s) 229
NruI TCGCGA 1 cut(s) 294
PaeR7I CTCGAG 1 cut(s) 239
PagI TCATGA 1 cut(s) 219
PciSI GCTCTTC 1 cut(s) 120
PctI GAATGC 2 cut(s) 118, 178
PfeI GAWTC 1 cut(s) 29
PfoI TCCNGGA 1 cut(s) 12
PkrI GCNGC 2 cut(s) 21, 132
Psp6I CCWGG 1 cut(s) 12
PspGI CCWGG 1 cut(s) 12
PspPI GGNCC 1 cut(s) 196
PspXI VCTCGAGB 1 cut(s) 239
RruI TCGCGA 1 cut(s) 294
RseI CAYNNNNRTG 1 cut(s) 171
SalI GTCGAC 1 cut(s) 201
SapI GCTCTTC 1 cut(s) 120
SatI GCNGC 2 cut(s) 20, 131
Sau96I GGNCC 1 cut(s) 196
ScrFI CCNGG 1 cut(s) 14
SetI ASST 3 cut(s) 280, 289, 303
SfcI CTRYAG 1 cut(s) 323
Sfr274I CTCGAG 1 cut(s) 239
SgrDI CGTCGACG 1 cut(s) 201
SinI GGWCC 1 cut(s) 196
SlaI CTCGAG 1 cut(s) 239
SmiMI CAYNNNNRTG 1 cut(s) 171
SmlI CTYRAG 1 cut(s) 239
SmoI CTYRAG 1 cut(s) 239
Sse9I AATT 3 cut(s) 57, 151, 269
SsiI CCGC 3 cut(s) 130, 159, 191
StyD4I CCNGG 1 cut(s) 12
TaaI ACNGT 1 cut(s) 200
TaiI ACGT 1 cut(s) 280
TaqI TCGA 4 cut(s) 202, 210, 240, 308
TaqII GACCGA 1 cut(s) 217
TasI AATT 3 cut(s) 57, 151, 269
TauI GCSGC 1 cut(s) 133
TfiI GAWTC 1 cut(s) 29
TseFI GTSAC 1 cut(s) 229
TseI GCWGC 1 cut(s) 19
Tsp45I GTSAC 1 cut(s) 229
TspDTI ATGAA 1 cut(s) 208
VpaK11BI GGWCC 1 cut(s) 196
XagI CCTNNNNNAGG 1 cut(s) 191
XapI RAATTY 2 cut(s) 57, 151
XhoI CTCGAG 1 cut(s) 239
XmiI GTMKAC 1 cut(s) 202
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.