Basic Information

Type: gene

Biological Identity

Species

rosa_roxburghii

Chromosome

GWHEROQ00000004

Orthogroup ID

OG0000314

Physical Location & Seq

Genomic Coordinates Forward (+)

54470440 .. 54471687

Gene Structure 1248 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rroxscaffold_4G00323600.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 846 bp

ATGGAGAAGATCATCAACAAAATTGTTCTTTTGACAATACAATTGTCTCGAACAAATATCGATTTCTCCACGGACCCGGCCATATATGTGGCTGCGATCGAATGCAGGGGGCAAGACGTAGCCCACGTCCATGCGGTGGTCACCAAAAGCGAGGTTCTTAAGGATCCTAATAGTCAAGCGGTGATTAAATATGATCTAGACGACCAAATTGTCGTTTACCGGGAAGAAAAGCCTCCGGAAGAAACTTGTCAAGAAAGATGTGGCCTTGCTACCGGACGTCGTCATGACCGGGGAGGTAATCAAAACCATGATCAATTTAATTATGACTCGCTCTCGAACGTCATGGCCATGCAAATGAGGCATCTCAATATGATGCCGGACGGTGGACGAGAGGCAAACAAATACTTTGATATGCGTATTTTTGAAGAAGAGATCGATTCACCAATTTTTGGTGATTCTAAATATGATCTCAACATGGAGCCAATATATGATGAATACGACGATAATTACAATTTAATGTTTGGTTCCAAAAATCATATGCAGGAGTACAAGTCTTTTGAAGCTCTTGATATGGAGAATTTTGACCAACAAGTGGTTAAATGCAAAAGCCAATCTGTGGCTTCTTTTGAAGACACCATGTTCTATGACATGGTAGTTGGCGACAAAGCCGATCTTAGGACAGCTTCATCTCCAAAACTGCACTTGAAGATCTCCCTTCGTCAACCAACAAAGATACTTGGGGGCAATATTACTCTTTCTACGAGCCAAATTTCTTTCAAGTGTCCGACACGAAGTATCTTTGTTATTTTCTTACAAGCTCCCGCAAGAGGGATTTTCATGCCATAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003676 GO:0003723 GO:0003824 GO:0004652 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005829 GO:0006139 GO:0006276 GO:0006378 GO:0006396 GO:0006397 GO:0006725 GO:0006807 GO:0008150 GO:0008152 GO:0009451 GO:0009987 GO:0010467 GO:0016070 GO:0016071 GO:0016740 GO:0016772 GO:0016779 GO:0031123 GO:0031124 GO:0034641 GO:0043170 GO:0043412 GO:0043631 GO:0044237 GO:0044238 GO:0044424 GO:0044444 GO:0044464 GO:0046483 GO:0070566 GO:0071704 GO:0090304 GO:0097159 GO:1901360 GO:1901363

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

PolyA_pol PolyA_pol_RNAbd

Protein Analysis

281

Amino Acids

32.18

Weight (kDa)

5.14

Isoelectric Point (pI)

50.71

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0000314)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_1g02272 FvH4_1g22661 FvH4_2g10242 FvH4_2g34051 FvH4_3g19221 FvH4_3g29651 FvH4_3g30891 FvH4_4g11061 FvH4_5g09250 FvH4_5g15302 FvH4_5g15303 FvH4_5g15304 FvH4_5g28521 FvH4_6g23591 FvH4_7g05710 FvH4_7g19520
pyrus_communis	pycom07g06330
rosa_chinensis	RchiOBHm_Chr5g0027301 RchiOBHm_Chr6g0251451 RchiOBHm_Chr6g0274861
rosa_laevigata	RLG00000007850
rosa_multiflora	Rmu_co8230721.1_g000001 Rmu_sc0000271.1_g000027 Rmu_sc0000303.1_g000024 Rmu_sc0000368.1_g000024 Rmu_sc0000621.1_g000037 Rmu_sc0000693.1_g000081 Rmu_sc0001229.1_g000006 Rmu_sc0001373.1_g000003 Rmu_sc0001459.1_g000001 Rmu_sc0001744.1_g000002 Rmu_sc0001909.1_g000002 Rmu_sc0002053.1_g000012 Rmu_sc0002060.1_g000015 Rmu_sc0002119.1_g000036 Rmu_sc0002177.1_g000007 Rmu_sc0002822.1_g000024 Rmu_sc0002965.1_g000015 Rmu_sc0003363.1_g000051 Rmu_sc0003500.1_g000013 Rmu_sc0004191.1_g000020 Rmu_sc0004904.1_g000032 Rmu_sc0005325.1_g000008 Rmu_sc0005947.1_g000040 Rmu_sc0006475.1_g000001 Rmu_sc0006522.1_g000019 Rmu_sc0007102.1_g000005 Rmu_sc0007810.1_g000003 Rmu_sc0008339.1_g000025 Rmu_sc0008698.1_g000004 Rmu_sc0009313.1_g000006 Rmu_sc0009850.1_g000006 Rmu_sc0010598.1_g000003 Rmu_sc0011162.1_g000002 Rmu_sc0011824.1_g000004 Rmu_sc0011900.1_g000010 Rmu_sc0012291.1_g000006 Rmu_sc0012619.1_g000003 Rmu_sc0014679.1_g000001 Rmu_sc0019053.1_g000001 Rmu_sc0021462.1_g000003 Rmu_sc0024172.1_g000001 Rmu_sc0024173.1_g000001 Rmu_ssc0000052.1_g000016 Rmu_ssc0000392.1_g000010 Rmu_ssc0000421.1_g000062 Rmu_ssc0000479.1_g000006
rosa_roxburghii	Rroxscaffold_153G00436600 Rroxscaffold_1G00008580 Rroxscaffold_1G00016770 Rroxscaffold_1G00029550 Rroxscaffold_1G00036450 Rroxscaffold_1G00040410 Rroxscaffold_1G00047110 Rroxscaffold_1G00060570 Rroxscaffold_2G00081500 Rroxscaffold_2G00081510 Rroxscaffold_2G00086080 Rroxscaffold_2G00099620 Rroxscaffold_2G00099630 Rroxscaffold_2G00099640 Rroxscaffold_2G00109170 Rroxscaffold_2G00127750 Rroxscaffold_2G00128590 Rroxscaffold_2G00130780 Rroxscaffold_2G00131040 Rroxscaffold_2G00143160 Rroxscaffold_3G00229280 Rroxscaffold_3G00229290 Rroxscaffold_3G00229970 Rroxscaffold_3G00242860 Rroxscaffold_3G00242890 Rroxscaffold_3G00242900 Rroxscaffold_3G00248200 Rroxscaffold_4G00284550 Rroxscaffold_4G00288780 Rroxscaffold_4G00298620 Rroxscaffold_4G00298630 Rroxscaffold_4G00312420 Rroxscaffold_4G00320310 Rroxscaffold_4G00322220 Rroxscaffold_4G00323600 Rroxscaffold_4G00331830 Rroxscaffold_4G00332010 Rroxscaffold_4G00332020 Rroxscaffold_5G00344470 Rroxscaffold_5G00345310 Rroxscaffold_5G00356120 Rroxscaffold_5G00368700 Rroxscaffold_5G00379820 Rroxscaffold_5G00382480 Rroxscaffold_6G00395080 Rroxscaffold_6G00405520 Rroxscaffold_6G00428210 Rroxscaffold_7G00193460
rosa_samantha	Rh7CG413200 Rh7DG284900

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AasI	GACNNNNNNGTC	1 cut(s)	209
AatII	GACGTC	1 cut(s)	280
AccB7I	CCANNNNNTGG	4 cut(s)	136, 449, 592, 616
AccIII	TCCGGA	1 cut(s)	235
AciI	CCGC	3 cut(s)	134, 179, 822
AclWI	GGATC	2 cut(s)	158, 171
AcoI	YGGCCR	2 cut(s)	78, 345
AcsI	RAATTY	2 cut(s)	577, 768
AcyI	GRCGYC	1 cut(s)	277
AfaI	GTAC	1 cut(s)	548
AfiI	CCNNNNNNNGG	8 cut(s)	136, 383, 449, 592, 616, 675, 827, 828
AflII	CTTAAG	1 cut(s)	158
AgsI	TTSAA	5 cut(s)	425, 560, 629, 706, 778
AjiI	CACGTC	1 cut(s)	127
AluBI	AGCT	3 cut(s)	563, 683, 818
AluI	AGCT	3 cut(s)	563, 683, 818
Alw26I	GTCTC	1 cut(s)	51
AlwI	GGATC	2 cut(s)	158, 171
Aor13HI	TCCGGA	1 cut(s)	235
AoxI	GGCC	3 cut(s)	78, 262, 345
ApeKI	GCWGC	1 cut(s)	92
ApoI	RAATTY	2 cut(s)	577, 768
AspS9I	GGNCC	1 cut(s)	73
AsuC2I	CCSGG	3 cut(s)	77, 221, 290
AsuHPI	GGTGA	4 cut(s)	133, 193, 432, 464
AvaII	GGWCC	1 cut(s)	73
BalI	TGGCCA	1 cut(s)	347
BamHI	GGATCC	1 cut(s)	163
BbsI	GAAGAC	1 cut(s)	636
BbvI	GCAGC	1 cut(s)	79
BclI	TGATCA	1 cut(s)	310
BcnI	CCSGG	3 cut(s)	77, 221, 290
BcoDI	GTCTC	1 cut(s)	51
BfaI	CTAG	1 cut(s)	197
BfrI	CTTAAG	1 cut(s)	158
BglII	AGATCT	1 cut(s)	708
BisI	GCNGC	1 cut(s)	93
BlsI	GCNGC	1 cut(s)	94
Bme1390I	CCNGG	3 cut(s)	77, 221, 290
Bme18I	GGWCC	1 cut(s)	73
BmgBI	CACGTC	1 cut(s)	127
BmgT120I	GGNCC	1 cut(s)	73
BmiI	GGNNCC	4 cut(s)	75, 165, 480, 526
BmrFI	CCNGG	3 cut(s)	77, 221, 290
BmsI	GCATC	2 cut(s)	363, 370
BpiI	GAAGAC	1 cut(s)	636
BpuMI	CCSGG	3 cut(s)	77, 221, 290
Bsa29I	ATCGAT	2 cut(s)	60, 435
BsaHI	GRCGYC	1 cut(s)	277
BsaJI	CCNNGG	2 cut(s)	69, 289
BsaWI	WCCGGW	2 cut(s)	235, 272
BsaXI	ACNNNNNCTCC	2 cut(s)	536, 566
Bsc4I	CCNNNNNNNGG	8 cut(s)	136, 383, 449, 592, 616, 675, 827, 828
BseAI	TCCGGA	1 cut(s)	235
BseCI	ATCGAT	2 cut(s)	60, 435
BseDI	CCNNGG	2 cut(s)	69, 289
BseLI	CCNNNNNNNGG	8 cut(s)	136, 383, 449, 592, 616, 675, 827, 828
BseXI	GCAGC	1 cut(s)	79
BsgI	GTGCAG	1 cut(s)	683
Bsh1285I	CGRYCG	1 cut(s)	99
BshFI	GGCC	3 cut(s)	80, 264, 347
BshVI	ATCGAT	2 cut(s)	60, 435
BsiEI	CGRYCG	1 cut(s)	99
BsiSI	CCGG	6 cut(s)	77, 220, 236, 273, 289, 377
BslI	CCNNNNNNNGG	8 cut(s)	136, 383, 449, 592, 616, 675, 827, 828
BsmAI	GTCTC	1 cut(s)	51
BsmI	GAATGC	1 cut(s)	107
BsnI	GGCC	3 cut(s)	80, 264, 347
Bsp13I	TCCGGA	1 cut(s)	235
Bsp143I	GATC	9 cut(s)	9, 96, 163, 193, 310, 432, 466, 670, 708
BspACI	CCGC	3 cut(s)	134, 179, 822
BspANI	GGCC	3 cut(s)	80, 264, 347
BspDI	ATCGAT	2 cut(s)	60, 435
BspEI	TCCGGA	1 cut(s)	235
BspHI	TCATGA	1 cut(s)	283
BspLI	GGNNCC	4 cut(s)	75, 165, 480, 526
BspPI	GGATC	2 cut(s)	158, 171
BspTI	CTTAAG	1 cut(s)	158
BssECI	CCNNGG	2 cut(s)	69, 289
BssMI	GATC	9 cut(s)	9, 96, 163, 193, 310, 432, 466, 670, 708
BssNI	GRCGYC	1 cut(s)	277
Bst4CI	ACNGT	1 cut(s)	383
Bst6I	CTCTTC	1 cut(s)	423
BstACI	GRCGYC	1 cut(s)	277
BstAFI	CTTAAG	1 cut(s)	158
BstDEI	CTNAG	1 cut(s)	674
BstDSI	CCRYGG	1 cut(s)	69
BstEII	GGTNACC	1 cut(s)	139
BstKTI	GATC	9 cut(s)	12, 99, 166, 196, 313, 435, 469, 673, 711
BstMAI	GTCTC	1 cut(s)	51
BstMBI	GATC	9 cut(s)	9, 96, 163, 193, 310, 432, 466, 670, 708
BstMCI	CGRYCG	1 cut(s)	99
BstMWI	GCNNNNNNNGC	1 cut(s)	358
BstPI	GGTNACC	1 cut(s)	139
BstSCI	CCNGG	3 cut(s)	75, 219, 288
BstV1I	GCAGC	1 cut(s)	79
BstV2I	GAAGAC	1 cut(s)	636
BstX2I	RGATCY	2 cut(s)	163, 708
BstXI	CCANNNNNNTGG	1 cut(s)	88
BstYI	RGATCY	2 cut(s)	163, 708
Bsu15I	ATCGAT	2 cut(s)	60, 435
BsuRI	GGCC	3 cut(s)	80, 264, 347
BsuTUI	ATCGAT	2 cut(s)	60, 435
BtgI	CCRYGG	1 cut(s)	69
BtrI	CACGTC	1 cut(s)	127
CciI	TCATGA	1 cut(s)	283
Cfr13I	GGNCC	1 cut(s)	73
ClaI	ATCGAT	2 cut(s)	60, 435
Csp6I	GTAC	1 cut(s)	547
CviAII	CATG	9 cut(s)	131, 284, 308, 343, 349, 475, 637, 649, 838
CviQI	GTAC	1 cut(s)	547
DdeI	CTNAG	1 cut(s)	674
DpnI	GATC	9 cut(s)	11, 98, 165, 195, 312, 434, 468, 672, 710
DpnII	GATC	9 cut(s)	9, 96, 163, 193, 310, 432, 466, 670, 708
DrdI	GACNNNNNNGTC	1 cut(s)	209
DseDI	GACNNNNNNGTC	1 cut(s)	209
EaeI	YGGCCR	2 cut(s)	78, 345
Eam1104I	CTCTTC	1 cut(s)	423
EarI	CTCTTC	1 cut(s)	423
Eco47I	GGWCC	1 cut(s)	73
Eco91I	GGTNACC	1 cut(s)	139
EcoO65I	GGTNACC	1 cut(s)	139
FaeI	CATG	9 cut(s)	134, 287, 311, 346, 352, 478, 640, 652, 841
FalI	AAGNNNNNCTT	2 cut(s)	657, 689
FatI	CATG	9 cut(s)	130, 283, 307, 342, 348, 474, 636, 648, 837
FauI	CCCGC	1 cut(s)	829
FauNDI	CATATG	1 cut(s)	537
FbaI	TGATCA	1 cut(s)	310
Fnu4HI	GCNGC	1 cut(s)	93
Fsp4HI	GCNGC	1 cut(s)	93
FspBI	CTAG	1 cut(s)	197
GluI	GCNGC	1 cut(s)	93
HaeIII	GGCC	3 cut(s)	80, 264, 347
HapII	CCGG	6 cut(s)	77, 220, 236, 273, 289, 377
Hin1I	GRCGYC	1 cut(s)	277
Hin1II	CATG	9 cut(s)	134, 287, 311, 346, 352, 478, 640, 652, 841
HincII	GTYRAC	1 cut(s)	722
HindII	GTYRAC	1 cut(s)	722
HinfI	GANTC	3 cut(s)	326, 437, 455
HpaII	CCGG	6 cut(s)	77, 220, 236, 273, 289, 377
HphI	GGTGA	4 cut(s)	133, 193, 432, 464
Hpy166II	GTNNAC	3 cut(s)	217, 386, 722
Hpy188I	TCNGA	1 cut(s)	786
Hpy188III	TCNNGA	7 cut(s)	48, 197, 236, 251, 284, 334, 566
Hpy8I	GTNNAC	3 cut(s)	217, 386, 722
Hpy99I	CGWCG	2 cut(s)	282, 503
HpyAV	CCTTC	1 cut(s)	725
HpyCH4III	ACNGT	1 cut(s)	383
HpyCH4IV	ACGT	4 cut(s)	117, 126, 277, 339
HpyCH4V	TGCA	5 cut(s)	105, 352, 541, 603, 700
HpyF10VI	GCNNNNNNNGC	1 cut(s)	358
HpyF3I	CTNAG	1 cut(s)	674
HpySE526I	ACGT	4 cut(s)	117, 126, 277, 339
Hsp92I	GRCGYC	1 cut(s)	277
Hsp92II	CATG	9 cut(s)	134, 287, 311, 346, 352, 478, 640, 652, 841
Kpn2I	TCCGGA	1 cut(s)	235
Ksp22I	TGATCA	1 cut(s)	310
Kzo9I	GATC	9 cut(s)	9, 96, 163, 193, 310, 432, 466, 670, 708
LmnI	GCTCC	2 cut(s)	478, 823
LpnPI	CCDG	8 cut(s)	90, 91, 233, 249, 286, 302, 390, 527
Lsp1109I	GCAGC	1 cut(s)	79
LweI	GCATC	2 cut(s)	363, 370
MaeI	CTAG	1 cut(s)	197
MaeII	ACGT	4 cut(s)	117, 126, 277, 339
MaeIII	GTNAC	1 cut(s)	139
MalI	GATC	9 cut(s)	11, 98, 165, 195, 312, 434, 468, 672, 710
MboI	GATC	9 cut(s)	9, 96, 163, 193, 310, 432, 466, 670, 708
MboII	GAAGA	7 cut(s)	19, 236, 251, 437, 440, 641, 718
MfeI	CAATTG	1 cut(s)	41
MflI	RGATCY	2 cut(s)	163, 708
MlsI	TGGCCA	1 cut(s)	347
MluNI	TGGCCA	1 cut(s)	347
MlyI	GAGTC	1 cut(s)	320
MmeI	TCCRAC	1 cut(s)	809
MnlI	CCTC	6 cut(s)	145, 243, 287, 351, 385, 821
Mox20I	TGGCCA	1 cut(s)	347
MroI	TCCGGA	1 cut(s)	235
MscI	TGGCCA	1 cut(s)	347
MseI	TTAA	5 cut(s)	159, 186, 318, 515, 597
MslI	CAYNNNNRTG	4 cut(s)	86, 129, 347, 353
Msp20I	TGGCCA	1 cut(s)	347
MspCI	CTTAAG	1 cut(s)	158
MspI	CCGG	6 cut(s)	77, 220, 236, 273, 289, 377
MspR9I	CCNGG	3 cut(s)	77, 221, 290
MunI	CAATTG	1 cut(s)	41
Mva1269I	GAATGC	1 cut(s)	107
MwoI	GCNNNNNNNGC	1 cut(s)	358
NciI	CCSGG	3 cut(s)	77, 221, 290
NdeI	CATATG	1 cut(s)	537
NdeII	GATC	9 cut(s)	9, 96, 163, 193, 310, 432, 466, 670, 708
NlaIII	CATG	9 cut(s)	134, 287, 311, 346, 352, 478, 640, 652, 841
NlaIV	GGNNCC	4 cut(s)	75, 165, 480, 526
NmuCI	GTSAC	1 cut(s)	139
PagI	TCATGA	1 cut(s)	283
PcsI	WCGNNNNNNNCGW	1 cut(s)	123
PctI	GAATGC	1 cut(s)	107
PfeI	GAWTC	2 cut(s)	437, 455
PflFI	GACNNNGTC	1 cut(s)	279
PflMI	CCANNNNNTGG	4 cut(s)	136, 449, 592, 616
PkrI	GCNGC	1 cut(s)	94
Ple19I	CGATCG	1 cut(s)	99
PleI	GAGTC	1 cut(s)	320
PpsI	GAGTC	1 cut(s)	320
PspEI	GGTNACC	1 cut(s)	139
PspN4I	GGNNCC	4 cut(s)	75, 165, 480, 526
PspPI	GGNCC	1 cut(s)	73
PsuI	RGATCY	2 cut(s)	163, 708
PsyI	GACNNNGTC	1 cut(s)	279
PvuI	CGATCG	1 cut(s)	99
RsaI	GTAC	1 cut(s)	548
RsaNI	GTAC	1 cut(s)	547
RseI	CAYNNNNRTG	4 cut(s)	86, 129, 347, 353
SaqAI	TTAA	5 cut(s)	159, 186, 318, 515, 597
SatI	GCNGC	1 cut(s)	93
Sau3AI	GATC	9 cut(s)	9, 96, 163, 193, 310, 432, 466, 670, 708
Sau96I	GGNCC	1 cut(s)	73
SchI	GAGTC	1 cut(s)	320
ScrFI	CCNGG	3 cut(s)	77, 221, 290
SetI	ASST	9 cut(s)	120, 129, 156, 280, 298, 342, 565, 685, 820
SfaNI	GCATC	2 cut(s)	363, 370
SinI	GGWCC	1 cut(s)	73
SmiMI	CAYNNNNRTG	4 cut(s)	86, 129, 347, 353
SmlI	CTYRAG	1 cut(s)	158
SmoI	CTYRAG	1 cut(s)	158
SsiI	CCGC	3 cut(s)	134, 179, 822
SspI	AATATT	1 cut(s)	748
SspMI	CTAG	1 cut(s)	197
StyD4I	CCNGG	3 cut(s)	75, 219, 288
TaaI	ACNGT	1 cut(s)	383
TaiI	ACGT	4 cut(s)	120, 129, 280, 342
TaqI	TCGA	5 cut(s)	49, 60, 99, 335, 435
TatI	WGTACW	1 cut(s)	546
TfiI	GAWTC	2 cut(s)	437, 455
Tru1I	TTAA	5 cut(s)	159, 186, 318, 515, 597
Tru9I	TTAA	5 cut(s)	159, 186, 318, 515, 597
TseFI	GTSAC	1 cut(s)	139
TseI	GCWGC	1 cut(s)	92
Tsp45I	GTSAC	1 cut(s)	139
TspDTI	ATGAA	3 cut(s)	507, 675, 826
TspGWI	ACGGA	1 cut(s)	86
Tth111I	GACNNNGTC	1 cut(s)	279
Van91I	CCANNNNNTGG	4 cut(s)	136, 449, 592, 616
Vha464I	CTTAAG	1 cut(s)	158
VpaK11BI	GGWCC	1 cut(s)	73
XapI	RAATTY	2 cut(s)	577, 768
XbaI	TCTAGA	1 cut(s)	196
XspI	CTAG	1 cut(s)	197
ZraI	GACGTC	1 cut(s)	278

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.