Rroxscaffold_3G00229970

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_roxburghii
GWHEROQ00000003
OG0000314
Physical Location & Seq
Reverse (-)
14503997 .. 14504532
536 bp
Loading structure...
UTR
Exon/CDS
Intron
Rroxscaffold_3G00229970.1

Sequence Viewer

Length: 297 bp
ATGGATGGCTTTGTGCCCATTCCTATCTCGCAGAATGCGAGCATAGAGGAGCGGCTTGCCATCTTCCGGCAGAACAATGCATCGTATTATGAGAAGACAAGAAAAGGGCTCGCGGAAGAGCGACGGAAGATTGATGACCTTGTTAAAAGGTCCAAGTCTTGGGGCAAGGTTCGCTTGGTCAACCTCGCTAGGCCCGGCATGTACGTGCCACCAAATGCTCGAGACAAGGCTAACAGCAGTATAGCCACACCTTCGACCGCTACCGCATCTACCAAGACCAAAGAAAAAGCCCCGTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

98

Amino Acids

10.93

Weight (kDa)

10.19

Isoelectric Point (pI)

49.31

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0000314)

Species Orthologous Gene IDs
fragaria_vesca FvH4_1g02272 FvH4_1g22661 FvH4_2g10242 FvH4_2g34051 FvH4_3g19221 FvH4_3g29651 FvH4_3g30891 FvH4_4g11061 FvH4_5g09250 FvH4_5g15302 FvH4_5g15303 FvH4_5g15304 FvH4_5g28521 FvH4_6g23591 FvH4_7g05710 FvH4_7g19520
pyrus_communis pycom07g06330
rosa_chinensis RchiOBHm_Chr5g0027301 RchiOBHm_Chr6g0251451 RchiOBHm_Chr6g0274861
rosa_laevigata RLG00000007850
rosa_multiflora Rmu_co8230721.1_g000001 Rmu_sc0000271.1_g000027 Rmu_sc0000303.1_g000024 Rmu_sc0000368.1_g000024 Rmu_sc0000621.1_g000037 Rmu_sc0000693.1_g000081 Rmu_sc0001229.1_g000006 Rmu_sc0001373.1_g000003 Rmu_sc0001459.1_g000001 Rmu_sc0001744.1_g000002 Rmu_sc0001909.1_g000002 Rmu_sc0002053.1_g000012 Rmu_sc0002060.1_g000015 Rmu_sc0002119.1_g000036 Rmu_sc0002177.1_g000007 Rmu_sc0002822.1_g000024 Rmu_sc0002965.1_g000015 Rmu_sc0003363.1_g000051 Rmu_sc0003500.1_g000013 Rmu_sc0004191.1_g000020 Rmu_sc0004904.1_g000032 Rmu_sc0005325.1_g000008 Rmu_sc0005947.1_g000040 Rmu_sc0006475.1_g000001 Rmu_sc0006522.1_g000019 Rmu_sc0007102.1_g000005 Rmu_sc0007810.1_g000003 Rmu_sc0008339.1_g000025 Rmu_sc0008698.1_g000004 Rmu_sc0009313.1_g000006 Rmu_sc0009850.1_g000006 Rmu_sc0010598.1_g000003 Rmu_sc0011162.1_g000002 Rmu_sc0011824.1_g000004 Rmu_sc0011900.1_g000010 Rmu_sc0012291.1_g000006 Rmu_sc0012619.1_g000003 Rmu_sc0014679.1_g000001 Rmu_sc0019053.1_g000001 Rmu_sc0021462.1_g000003 Rmu_sc0024172.1_g000001 Rmu_sc0024173.1_g000001 Rmu_ssc0000052.1_g000016 Rmu_ssc0000392.1_g000010 Rmu_ssc0000421.1_g000062 Rmu_ssc0000479.1_g000006
rosa_roxburghii Rroxscaffold_153G00436600 Rroxscaffold_1G00008580 Rroxscaffold_1G00016770 Rroxscaffold_1G00029550 Rroxscaffold_1G00036450 Rroxscaffold_1G00040410 Rroxscaffold_1G00047110 Rroxscaffold_1G00060570 Rroxscaffold_2G00081500 Rroxscaffold_2G00081510 Rroxscaffold_2G00086080 Rroxscaffold_2G00099620 Rroxscaffold_2G00099630 Rroxscaffold_2G00099640 Rroxscaffold_2G00109170 Rroxscaffold_2G00127750 Rroxscaffold_2G00128590 Rroxscaffold_2G00130780 Rroxscaffold_2G00131040 Rroxscaffold_2G00143160 Rroxscaffold_3G00229280 Rroxscaffold_3G00229290 Rroxscaffold_3G00229970 Rroxscaffold_3G00242860 Rroxscaffold_3G00242890 Rroxscaffold_3G00242900 Rroxscaffold_3G00248200 Rroxscaffold_4G00284550 Rroxscaffold_4G00288780 Rroxscaffold_4G00298620 Rroxscaffold_4G00298630 Rroxscaffold_4G00312420 Rroxscaffold_4G00320310 Rroxscaffold_4G00322220 Rroxscaffold_4G00323600 Rroxscaffold_4G00331830 Rroxscaffold_4G00332010 Rroxscaffold_4G00332020 Rroxscaffold_5G00344470 Rroxscaffold_5G00345310 Rroxscaffold_5G00356120 Rroxscaffold_5G00368700 Rroxscaffold_5G00379820 Rroxscaffold_5G00382480 Rroxscaffold_6G00395080 Rroxscaffold_6G00405520 Rroxscaffold_6G00428210 Rroxscaffold_7G00193460
rosa_samantha Rh7CG413200 Rh7DG284900

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB7I CCANNNNNTGG 1 cut(s) 159
AccBSI CCGCTC 1 cut(s) 52
AccII CGCG 1 cut(s) 113
AciI CCGC 4 cut(s) 52, 113, 258, 264
AfaI GTAC 1 cut(s) 203
AfiI CCNNNNNNNGG 2 cut(s) 66, 159
Alw26I GTCTC 1 cut(s) 216
Ama87I CYCGRG 1 cut(s) 219
AoxI GGCC 1 cut(s) 191
AspS9I GGNCC 2 cut(s) 150, 192
AsuC2I CCSGG 1 cut(s) 195
AvaI CYCGRG 1 cut(s) 219
AvaII GGWCC 1 cut(s) 150
BaeGI GKGCMC 1 cut(s) 18
BanII GRGCYC 1 cut(s) 111
BbsI GAAGAC 1 cut(s) 101
BccI CCATC 1 cut(s) 68
BcnI CCSGG 1 cut(s) 195
BcoDI GTCTC 1 cut(s) 216
BfaI CTAG 1 cut(s) 189
BisI GCNGC 1 cut(s) 53
BlsI GCNGC 1 cut(s) 54
Bme1390I CCNGG 1 cut(s) 195
Bme18I GGWCC 1 cut(s) 150
BmeT110I CYCGRG 1 cut(s) 219
BmgT120I GGNCC 2 cut(s) 150, 192
BmrFI CCNGG 1 cut(s) 195
BmsI GCATC 2 cut(s) 89, 275
BpiI GAAGAC 1 cut(s) 101
BpuMI CCSGG 1 cut(s) 195
BsaAI YACGTR 1 cut(s) 205
Bsc4I CCNNNNNNNGG 2 cut(s) 66, 159
BseGI GGATG 1 cut(s) 10
BseLI CCNNNNNNNGG 2 cut(s) 66, 159
BseRI GAGGAG 1 cut(s) 62
BseSI GKGCMC 1 cut(s) 18
Bsh1236I CGCG 1 cut(s) 113
Bsh1285I CGRYCG 1 cut(s) 258
BshFI GGCC 1 cut(s) 193
BsiEI CGRYCG 1 cut(s) 258
BsiHKCI CYCGRG 1 cut(s) 219
BsiSI CCGG 2 cut(s) 67, 195
BslI CCNNNNNNNGG 2 cut(s) 66, 159
BsmAI GTCTC 1 cut(s) 216
BsmI GAATGC 1 cut(s) 40
BsnI GGCC 1 cut(s) 193
BsoBI CYCGRG 1 cut(s) 219
Bsp1286I GDGCHC 2 cut(s) 18, 111
BspACI CCGC 4 cut(s) 52, 113, 258, 264
BspANI GGCC 1 cut(s) 193
BspFNI CGCG 1 cut(s) 113
BspQI GCTCTTC 1 cut(s) 111
BsrBI CCGCTC 1 cut(s) 52
Bst6I CTCTTC 1 cut(s) 111
BstBAI YACGTR 1 cut(s) 205
BstC8I GCNNGC 3 cut(s) 40, 57, 111
BstF5I GGATG 1 cut(s) 10
BstFNI CGCG 1 cut(s) 113
BstMAI GTCTC 1 cut(s) 216
BstMCI CGRYCG 1 cut(s) 258
BstMWI GCNNNNNNNGC 1 cut(s) 171
BstNSI RCATGY 1 cut(s) 202
BstSCI CCNGG 1 cut(s) 193
BstSLI GKGCMC 1 cut(s) 18
BstUI CGCG 1 cut(s) 113
BstV2I GAAGAC 1 cut(s) 101
BsuRI GGCC 1 cut(s) 193
BtsCI GGATG 1 cut(s) 10
Cac8I GCNNGC 3 cut(s) 40, 57, 111
Cfr13I GGNCC 2 cut(s) 150, 192
Csp6I GTAC 1 cut(s) 202
CviAII CATG 1 cut(s) 199
CviJI RGCY 7 cut(s) 9, 55, 109, 193, 230, 245, 290
CviKI_1 RGCY 7 cut(s) 9, 55, 109, 193, 230, 245, 290
CviQI GTAC 1 cut(s) 202
Eam1104I CTCTTC 1 cut(s) 111
EarI CTCTTC 1 cut(s) 111
Eco24I GRGCYC 1 cut(s) 111
Eco47I GGWCC 1 cut(s) 150
Eco88I CYCGRG 1 cut(s) 219
EcoT22I ATGCAT 1 cut(s) 82
EcoT38I GRGCYC 1 cut(s) 111
FaeI CATG 1 cut(s) 202
FaiI YATR 4 cut(s) 44, 90, 200, 242
FalI AAGNNNNNCTT 2 cut(s) 158, 190
FatI CATG 1 cut(s) 198
Fnu4HI GCNGC 1 cut(s) 53
FokI GGATG 1 cut(s) 17
FriOI GRGCYC 1 cut(s) 111
Fsp4HI GCNGC 1 cut(s) 53
FspBI CTAG 1 cut(s) 189
GluI GCNGC 1 cut(s) 53
HaeIII GGCC 1 cut(s) 193
HapII CCGG 2 cut(s) 67, 195
Hin1II CATG 1 cut(s) 202
HincII GTYRAC 1 cut(s) 181
HindII GTYRAC 1 cut(s) 181
HpaII CCGG 2 cut(s) 67, 195
Hpy166II GTNNAC 1 cut(s) 181
Hpy188III TCNNGA 1 cut(s) 221
Hpy8I GTNNAC 1 cut(s) 181
Hpy99I CGWCG 1 cut(s) 126
HpyAV CCTTC 1 cut(s) 261
HpyCH4IV ACGT 1 cut(s) 204
HpyCH4V TGCA 1 cut(s) 80
HpyF10VI GCNNNNNNNGC 1 cut(s) 171
HpySE526I ACGT 1 cut(s) 204
Hsp92II CATG 1 cut(s) 202
LguI GCTCTTC 1 cut(s) 111
LmnI GCTCC 1 cut(s) 49
LpnPI CCDG 2 cut(s) 80, 208
LweI GCATC 2 cut(s) 89, 275
MaeI CTAG 1 cut(s) 189
MaeII ACGT 1 cut(s) 204
MbiI CCGCTC 1 cut(s) 52
MboII GAAGA 4 cut(s) 55, 106, 128, 139
MhlI GDGCHC 2 cut(s) 18, 111
MnlI CCTC 2 cut(s) 40, 194
Mph1103I ATGCAT 1 cut(s) 82
MseI TTAA 1 cut(s) 144
MslI CAYNNNNRTG 1 cut(s) 203
MspI CCGG 2 cut(s) 67, 195
MspR9I CCNGG 1 cut(s) 195
Mva1269I GAATGC 1 cut(s) 40
MvnI CGCG 1 cut(s) 113
MwoI GCNNNNNNNGC 1 cut(s) 171
NciI CCSGG 1 cut(s) 195
NlaIII CATG 1 cut(s) 202
NsiI ATGCAT 1 cut(s) 82
NspI RCATGY 1 cut(s) 202
PaeR7I CTCGAG 1 cut(s) 219
PciSI GCTCTTC 1 cut(s) 111
PcsI WCGNNNNNNNCGW 1 cut(s) 35
PctI GAATGC 1 cut(s) 40
PflMI CCANNNNNTGG 1 cut(s) 159
PkrI GCNGC 1 cut(s) 54
Ppu21I YACGTR 1 cut(s) 205
PspPI GGNCC 2 cut(s) 150, 192
RsaI GTAC 1 cut(s) 203
RsaNI GTAC 1 cut(s) 202
RseI CAYNNNNRTG 1 cut(s) 203
SapI GCTCTTC 1 cut(s) 111
SaqAI TTAA 1 cut(s) 144
SatI GCNGC 1 cut(s) 53
Sau96I GGNCC 2 cut(s) 150, 192
ScrFI CCNGG 1 cut(s) 195
SduI GDGCHC 2 cut(s) 18, 111
SetI ASST 6 cut(s) 141, 152, 171, 186, 207, 253
SfaNI GCATC 2 cut(s) 89, 275
Sfr274I CTCGAG 1 cut(s) 219
SinI GGWCC 1 cut(s) 150
SlaI CTCGAG 1 cut(s) 219
SmiMI CAYNNNNRTG 1 cut(s) 203
SmlI CTYRAG 1 cut(s) 219
SmoI CTYRAG 1 cut(s) 219
SsiI CCGC 4 cut(s) 52, 113, 258, 264
SspMI CTAG 1 cut(s) 189
StyD4I CCNGG 1 cut(s) 193
TaiI ACGT 1 cut(s) 207
TaqI TCGA 2 cut(s) 220, 254
TauI GCSGC 1 cut(s) 55
Tru1I TTAA 1 cut(s) 144
Tru9I TTAA 1 cut(s) 144
TspGWI ACGGA 1 cut(s) 139
Van91I CCANNNNNTGG 1 cut(s) 159
VpaK11BI GGWCC 1 cut(s) 150
XceI RCATGY 1 cut(s) 202
XhoI CTCGAG 1 cut(s) 219
XspI CTAG 1 cut(s) 189
Zsp2I ATGCAT 1 cut(s) 82
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.