Basic Information

Type: gene

Biological Identity

Species

rosa_roxburghii

Chromosome

GWHEROQ00000002

Orthogroup ID

OG0000314

Physical Location & Seq

Genomic Coordinates Forward (+)

63349455 .. 63350599

Gene Structure 1145 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Rroxscaffold_2G00127750.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 744 bp

ATGCGGGAGTTCAAGTTCTTTGAAGCTCTTGATCATGAGATTTTTGACCAACAAGTGGTCAAATACAATAGCCAATCCGTGGCTTATTCTCAAGACACCATGTTCTATGACATGGTAGTTGGAGACAAAGCCGATCTTAGGGACAGCTTCAGCTCCAAAACTGCACTTGAAGATCTCCCTTCGTCAACCAACAGAGATACCTTGGGGCAATATTACTCCTTCTACGAGCCAAATTTCTTTCAAGTGTCCGACACGAAGTATCTTTGTTATTTTCTTACAAGCTCCCGCAAGAGGGATTTTCATGCCATAAATTTTGATACGTCGAGCTTGGACGAACGCTCGCAAGGAACATTATCACAAGAAGCGAGCTCGCCGAGTGCACTTGGCCTAAGCCTCGATAGCGAGGTTCAATCCGGCGAAGCACTTTGCAAGCTACGCACGGTCCGGCGAAGGCAATCCGAGGCCGCCGAGTGGTCTCCAATGGCCAATATGCCAATCCCGGTGGCGGTTGTCGAGGCGACCAAACCAAATTACGAGGAGATGATGCATCCCGTCCGGATTGATCCCTCGTGGGTCGTTTCGTTGGATTTTCATCATAAATGCGAGAATGCGAGATATGCACACAAGGTGTTTGATGGGATGCCCGAAAGGAATTCGGTTTCATGGGCTTTTATAATCGCGGGTTATGCGATGCAGCGCACCGGTTGGAGACGCATTGGGAGCTGTTGGTTGATGGAAGTTTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003676 GO:0003723 GO:0003824 GO:0004652 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005829 GO:0006139 GO:0006276 GO:0006378 GO:0006396 GO:0006397 GO:0006725 GO:0006807 GO:0008150 GO:0008152 GO:0009451 GO:0009987 GO:0010467 GO:0016070 GO:0016071 GO:0016740 GO:0016772 GO:0016779 GO:0031123 GO:0031124 GO:0034641 GO:0043170 GO:0043412 GO:0043631 GO:0044237 GO:0044238 GO:0044424 GO:0044444 GO:0044464 GO:0046483 GO:0070566 GO:0071704 GO:0090304 GO:0097159 GO:1901360 GO:1901363

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

PolyA_pol PolyA_pol_RNAbd

Protein Analysis

247

Amino Acids

28.44

Weight (kDa)

5.3

Isoelectric Point (pI)

59.17

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0000314)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_1g02272 FvH4_1g22661 FvH4_2g10242 FvH4_2g34051 FvH4_3g19221 FvH4_3g29651 FvH4_3g30891 FvH4_4g11061 FvH4_5g09250 FvH4_5g15302 FvH4_5g15303 FvH4_5g15304 FvH4_5g28521 FvH4_6g23591 FvH4_7g05710 FvH4_7g19520
pyrus_communis	pycom07g06330
rosa_chinensis	RchiOBHm_Chr5g0027301 RchiOBHm_Chr6g0251451 RchiOBHm_Chr6g0274861
rosa_laevigata	RLG00000007850
rosa_multiflora	Rmu_co8230721.1_g000001 Rmu_sc0000271.1_g000027 Rmu_sc0000303.1_g000024 Rmu_sc0000368.1_g000024 Rmu_sc0000621.1_g000037 Rmu_sc0000693.1_g000081 Rmu_sc0001229.1_g000006 Rmu_sc0001373.1_g000003 Rmu_sc0001459.1_g000001 Rmu_sc0001744.1_g000002 Rmu_sc0001909.1_g000002 Rmu_sc0002053.1_g000012 Rmu_sc0002060.1_g000015 Rmu_sc0002119.1_g000036 Rmu_sc0002177.1_g000007 Rmu_sc0002822.1_g000024 Rmu_sc0002965.1_g000015 Rmu_sc0003363.1_g000051 Rmu_sc0003500.1_g000013 Rmu_sc0004191.1_g000020 Rmu_sc0004904.1_g000032 Rmu_sc0005325.1_g000008 Rmu_sc0005947.1_g000040 Rmu_sc0006475.1_g000001 Rmu_sc0006522.1_g000019 Rmu_sc0007102.1_g000005 Rmu_sc0007810.1_g000003 Rmu_sc0008339.1_g000025 Rmu_sc0008698.1_g000004 Rmu_sc0009313.1_g000006 Rmu_sc0009850.1_g000006 Rmu_sc0010598.1_g000003 Rmu_sc0011162.1_g000002 Rmu_sc0011824.1_g000004 Rmu_sc0011900.1_g000010 Rmu_sc0012291.1_g000006 Rmu_sc0012619.1_g000003 Rmu_sc0014679.1_g000001 Rmu_sc0019053.1_g000001 Rmu_sc0021462.1_g000003 Rmu_sc0024172.1_g000001 Rmu_sc0024173.1_g000001 Rmu_ssc0000052.1_g000016 Rmu_ssc0000392.1_g000010 Rmu_ssc0000421.1_g000062 Rmu_ssc0000479.1_g000006
rosa_roxburghii	Rroxscaffold_153G00436600 Rroxscaffold_1G00008580 Rroxscaffold_1G00016770 Rroxscaffold_1G00029550 Rroxscaffold_1G00036450 Rroxscaffold_1G00040410 Rroxscaffold_1G00047110 Rroxscaffold_1G00060570 Rroxscaffold_2G00081500 Rroxscaffold_2G00081510 Rroxscaffold_2G00086080 Rroxscaffold_2G00099620 Rroxscaffold_2G00099630 Rroxscaffold_2G00099640 Rroxscaffold_2G00109170 Rroxscaffold_2G00127750 Rroxscaffold_2G00128590 Rroxscaffold_2G00130780 Rroxscaffold_2G00131040 Rroxscaffold_2G00143160 Rroxscaffold_3G00229280 Rroxscaffold_3G00229290 Rroxscaffold_3G00229970 Rroxscaffold_3G00242860 Rroxscaffold_3G00242890 Rroxscaffold_3G00242900 Rroxscaffold_3G00248200 Rroxscaffold_4G00284550 Rroxscaffold_4G00288780 Rroxscaffold_4G00298620 Rroxscaffold_4G00298630 Rroxscaffold_4G00312420 Rroxscaffold_4G00320310 Rroxscaffold_4G00322220 Rroxscaffold_4G00323600 Rroxscaffold_4G00331830 Rroxscaffold_4G00332010 Rroxscaffold_4G00332020 Rroxscaffold_5G00344470 Rroxscaffold_5G00345310 Rroxscaffold_5G00356120 Rroxscaffold_5G00368700 Rroxscaffold_5G00379820 Rroxscaffold_5G00382480 Rroxscaffold_6G00395080 Rroxscaffold_6G00405520 Rroxscaffold_6G00428210 Rroxscaffold_7G00193460
rosa_samantha	Rh7CG413200 Rh7DG284900

Restriction Enzyme Sites

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Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	1 cut(s)	674
AccB7I	CCANNNNNTGG	2 cut(s)	55, 79
AccII	CGCG	1 cut(s)	680
AccIII	TCCGGA	1 cut(s)	555
AciI	CCGC	5 cut(s)	4, 286, 465, 506, 680
AclWI	GGATC	1 cut(s)	557
AcoI	YGGCCR	1 cut(s)	483
AcsI	RAATTY	3 cut(s)	232, 310, 652
AcuI	CTGAAG	1 cut(s)	133
AdeI	CACNNNGTG	1 cut(s)	628
AfiI	CCNNNNNNNGG	7 cut(s)	55, 79, 138, 291, 292, 471, 505
AgeI	ACCGGT	1 cut(s)	701
AgsI	TTSAA	5 cut(s)	13, 23, 170, 242, 410
AloI	GAACNNNNNNTCC	1 cut(s)	31
AluBI	AGCT	8 cut(s)	26, 147, 153, 282, 327, 369, 433, 723
AluI	AGCT	8 cut(s)	26, 147, 153, 282, 327, 369, 433, 723
Alw21I	GWGCWC	2 cut(s)	371, 382
Alw26I	GTCTC	3 cut(s)	117, 480, 703
Alw44I	GTGCAC	1 cut(s)	378
AlwI	GGATC	1 cut(s)	557
Aor13HI	TCCGGA	1 cut(s)	555
AoxI	GGCC	3 cut(s)	385, 462, 483
ApaLI	GTGCAC	1 cut(s)	378
ApeKI	GCWGC	1 cut(s)	694
ApoI	RAATTY	3 cut(s)	232, 310, 652
AsiGI	ACCGGT	1 cut(s)	701
AspLEI	GCGC	1 cut(s)	699
AspS9I	GGNCC	1 cut(s)	442
AsuC2I	CCSGG	1 cut(s)	500
AvaII	GGWCC	1 cut(s)	442
BaeGI	GKGCMC	1 cut(s)	382
BalI	TGGCCA	1 cut(s)	485
BanII	GRGCYC	1 cut(s)	371
BauI	CACGAG	1 cut(s)	568
Bbv12I	GWGCWC	2 cut(s)	371, 382
BbvI	GCAGC	1 cut(s)	706
BccI	CCATC	2 cut(s)	629, 727
BclI	TGATCA	1 cut(s)	31
BcnI	CCSGG	1 cut(s)	500
BcoDI	GTCTC	3 cut(s)	117, 480, 703
BglII	AGATCT	1 cut(s)	172
BisI	GCNGC	2 cut(s)	465, 695
BlsI	GCNGC	2 cut(s)	466, 696
Bme1390I	CCNGG	1 cut(s)	500
Bme18I	GGWCC	1 cut(s)	442
BmgT120I	GGNCC	1 cut(s)	442
BmrFI	CCNGG	1 cut(s)	500
BmsI	GCATC	4 cut(s)	534, 556, 630, 681
Bpu10I	CCTNAGC	1 cut(s)	389
BpuEI	CTTGAG	1 cut(s)	75
BpuMI	CCSGG	1 cut(s)	500
BsaBI	GATNNNNATC	1 cut(s)	591
BsaI	GGTCTC	1 cut(s)	480
BsaJI	CCNNGG	3 cut(s)	78, 201, 459
BsaWI	WCCGGW	2 cut(s)	555, 701
BsaXI	ACNNNNNCTCC	1 cut(s)	29
Bsc4I	CCNNNNNNNGG	7 cut(s)	55, 79, 138, 291, 292, 471, 505
Bse118I	RCCGGY	1 cut(s)	701
Bse8I	GATNNNNATC	1 cut(s)	591
BseAI	TCCGGA	1 cut(s)	555
BseDI	CCNNGG	3 cut(s)	78, 201, 459
BseGI	GGATG	2 cut(s)	547, 645
BseJI	GATNNNNATC	1 cut(s)	591
BseLI	CCNNNNNNNGG	7 cut(s)	55, 79, 138, 291, 292, 471, 505
BseRI	GAGGAG	1 cut(s)	551
BseSI	GKGCMC	1 cut(s)	382
BseXI	GCAGC	1 cut(s)	706
BsgI	GTGCAG	1 cut(s)	147
Bsh1236I	CGCG	1 cut(s)	680
BshFI	GGCC	3 cut(s)	387, 464, 485
BshTI	ACCGGT	1 cut(s)	701
BsiHKAI	GWGCWC	2 cut(s)	371, 382
BsiSI	CCGG	5 cut(s)	414, 445, 500, 556, 702
BslFI	GGGAC	1 cut(s)	155
BslI	CCNNNNNNNGG	7 cut(s)	55, 79, 138, 291, 292, 471, 505
BsmAI	GTCTC	3 cut(s)	117, 480, 703
BsmBI	CGTCTC	1 cut(s)	703
BsmFI	GGGAC	1 cut(s)	155
BsmI	GAATGC	1 cut(s)	613
BsnI	GGCC	3 cut(s)	387, 464, 485
Bso31I	GGTCTC	1 cut(s)	480
Bsp1286I	GDGCHC	2 cut(s)	371, 382
Bsp13I	TCCGGA	1 cut(s)	555
Bsp143I	GATC	4 cut(s)	31, 133, 172, 562
BspACI	CCGC	5 cut(s)	4, 286, 465, 506, 680
BspANI	GGCC	3 cut(s)	387, 464, 485
BspEI	TCCGGA	1 cut(s)	555
BspFNI	CGCG	1 cut(s)	680
BspHI	TCATGA	1 cut(s)	34
BspPI	GGATC	1 cut(s)	557
BspTNI	GGTCTC	1 cut(s)	480
BsrFI	RCCGGY	1 cut(s)	701
BssAI	RCCGGY	1 cut(s)	701
BssECI	CCNNGG	3 cut(s)	78, 201, 459
BssMI	GATC	4 cut(s)	31, 133, 172, 562
BssSI	CACGAG	1 cut(s)	568
BssT1I	CCWWGG	1 cut(s)	201
Bst2BI	CACGAG	1 cut(s)	568
Bst4CI	ACNGT	1 cut(s)	442
BstC8I	GCNNGC	4 cut(s)	341, 367, 371, 431
BstDEI	CTNAG	2 cut(s)	137, 389
BstDSI	CCRYGG	1 cut(s)	78
BstF5I	GGATG	2 cut(s)	547, 645
BstFNI	CGCG	1 cut(s)	680
BstHHI	GCGC	1 cut(s)	699
BstKTI	GATC	4 cut(s)	34, 136, 175, 565
BstMAI	GTCTC	3 cut(s)	117, 480, 703
BstMBI	GATC	4 cut(s)	31, 133, 172, 562
BstMWI	GCNNNNNNNGC	5 cut(s)	399, 435, 617, 686, 720
BstSCI	CCNGG	1 cut(s)	498
BstSLI	GKGCMC	1 cut(s)	382
BstUI	CGCG	1 cut(s)	680
BstV1I	GCAGC	1 cut(s)	706
BstX2I	RGATCY	1 cut(s)	172
BstYI	RGATCY	1 cut(s)	172
BsuRI	GGCC	3 cut(s)	387, 464, 485
BtgI	CCRYGG	1 cut(s)	78
BtgZI	GCGATG	1 cut(s)	704
BtsCI	GGATG	2 cut(s)	547, 645
Cac8I	GCNNGC	4 cut(s)	341, 367, 371, 431
CciI	TCATGA	1 cut(s)	34
CfoI	GCGC	1 cut(s)	699
Cfr10I	RCCGGY	1 cut(s)	701
Cfr13I	GGNCC	1 cut(s)	442
CpoI	CGGWCCG	1 cut(s)	442
CseI	GACGC	1 cut(s)	720
CspAI	ACCGGT	1 cut(s)	701
CspCI	CAANNNNNGTGG	2 cut(s)	483, 518
CspI	CGGWCCG	1 cut(s)	442
CviAII	CATG	5 cut(s)	35, 100, 112, 302, 663
DdeI	CTNAG	2 cut(s)	137, 389
DpnI	GATC	4 cut(s)	33, 135, 174, 564
DpnII	GATC	4 cut(s)	31, 133, 172, 562
DraIII	CACNNNGTG	1 cut(s)	628
EaeI	YGGCCR	1 cut(s)	483
Ecl136II	GAGCTC	1 cut(s)	369
Eco130I	CCWWGG	1 cut(s)	201
Eco24I	GRGCYC	1 cut(s)	371
Eco31I	GGTCTC	1 cut(s)	480
Eco47I	GGWCC	1 cut(s)	442
Eco53kI	GAGCTC	1 cut(s)	369
Eco57I	CTGAAG	1 cut(s)	133
EcoICRI	GAGCTC	1 cut(s)	369
EcoRI	GAATTC	1 cut(s)	652
EcoT14I	CCWWGG	1 cut(s)	201
EcoT22I	ATGCAT	1 cut(s)	549
EcoT38I	GRGCYC	1 cut(s)	371
ErhI	CCWWGG	1 cut(s)	201
Esp3I	CGTCTC	1 cut(s)	703
FaeI	CATG	5 cut(s)	38, 103, 115, 305, 666
FalI	AAGNNNNNCTT	2 cut(s)	120, 152
FaqI	GGGAC	1 cut(s)	155
FatI	CATG	5 cut(s)	34, 99, 111, 301, 662
FauI	CCCGC	2 cut(s)	293, 673
FbaI	TGATCA	1 cut(s)	31
Fnu4HI	GCNGC	2 cut(s)	465, 695
FokI	GGATG	2 cut(s)	534, 652
FriOI	GRGCYC	1 cut(s)	371
Fsp4HI	GCNGC	2 cut(s)	465, 695
GlaI	GCGC	1 cut(s)	698
GluI	GCNGC	2 cut(s)	465, 695
HaeIII	GGCC	3 cut(s)	387, 464, 485
HapII	CCGG	5 cut(s)	414, 445, 500, 556, 702
HgaI	GACGC	1 cut(s)	720
HhaI	GCGC	1 cut(s)	699
Hin1II	CATG	5 cut(s)	38, 103, 115, 305, 666
Hin6I	GCGC	1 cut(s)	697
HinP1I	GCGC	1 cut(s)	697
HincII	GTYRAC	1 cut(s)	186
HindII	GTYRAC	1 cut(s)	186
HpaII	CCGG	5 cut(s)	414, 445, 500, 556, 702
Hpy166II	GTNNAC	2 cut(s)	186, 380
Hpy188I	TCNGA	2 cut(s)	250, 460
Hpy188III	TCNNGA	4 cut(s)	29, 35, 92, 556
Hpy8I	GTNNAC	2 cut(s)	186, 380
Hpy99I	CGWCG	1 cut(s)	325
HpyAV	CCTTC	3 cut(s)	189, 229, 444
HpyCH4III	ACNGT	1 cut(s)	442
HpyCH4IV	ACGT	1 cut(s)	320
HpyCH4V	TGCA	6 cut(s)	164, 380, 429, 547, 620, 694
HpyF10VI	GCNNNNNNNGC	5 cut(s)	399, 435, 617, 686, 720
HpyF3I	CTNAG	2 cut(s)	137, 389
HpySE526I	ACGT	1 cut(s)	320
Hsp92II	CATG	5 cut(s)	38, 103, 115, 305, 666
HspAI	GCGC	1 cut(s)	697
Kpn2I	TCCGGA	1 cut(s)	555
Ksp22I	TGATCA	1 cut(s)	31
Kzo9I	GATC	4 cut(s)	31, 133, 172, 562
LmnI	GCTCC	3 cut(s)	158, 287, 720
LpnPI	CCDG	5 cut(s)	427, 458, 513, 569, 715
Lsp1109I	GCAGC	1 cut(s)	706
LweI	GCATC	4 cut(s)	534, 556, 630, 681
MaeII	ACGT	1 cut(s)	320
MalI	GATC	4 cut(s)	33, 135, 174, 564
MboI	GATC	4 cut(s)	31, 133, 172, 562
MboII	GAAGA	1 cut(s)	182
MflI	RGATCY	1 cut(s)	172
MhlI	GDGCHC	2 cut(s)	371, 382
MlsI	TGGCCA	1 cut(s)	485
MluCI	AATT	4 cut(s)	232, 310, 529, 652
MluNI	TGGCCA	1 cut(s)	485
MmeI	TCCRAC	4 cut(s)	100, 273, 564, 686
MnlI	CCTC	7 cut(s)	285, 397, 404, 454, 508, 529, 577
Mox20I	TGGCCA	1 cut(s)	485
Mph1103I	ATGCAT	1 cut(s)	549
MroI	TCCGGA	1 cut(s)	555
MscI	TGGCCA	1 cut(s)	485
Msp20I	TGGCCA	1 cut(s)	485
MspI	CCGG	5 cut(s)	414, 445, 500, 556, 702
MspR9I	CCNGG	1 cut(s)	500
Mva1269I	GAATGC	1 cut(s)	613
MvnI	CGCG	1 cut(s)	680
MwoI	GCNNNNNNNGC	5 cut(s)	399, 435, 617, 686, 720
NciI	CCSGG	1 cut(s)	500
NdeII	GATC	4 cut(s)	31, 133, 172, 562
NlaIII	CATG	5 cut(s)	38, 103, 115, 305, 666
NmeAIII	GCCGAG	2 cut(s)	399, 493
NsiI	ATGCAT	1 cut(s)	549
PagI	TCATGA	1 cut(s)	34
PctI	GAATGC	1 cut(s)	613
PflMI	CCANNNNNTGG	2 cut(s)	55, 79
PinAI	ACCGGT	1 cut(s)	701
PkrI	GCNGC	2 cut(s)	466, 696
PsiI	TTATAA	1 cut(s)	674
Psp124BI	GAGCTC	1 cut(s)	371
PspPI	GGNCC	1 cut(s)	442
PsuI	RGATCY	1 cut(s)	172
Rsr2I	CGGWCCG	1 cut(s)	442
RsrII	CGGWCCG	1 cut(s)	442
SacI	GAGCTC	1 cut(s)	371
SatI	GCNGC	2 cut(s)	465, 695
Sau3AI	GATC	4 cut(s)	31, 133, 172, 562
Sau96I	GGNCC	1 cut(s)	442
ScrFI	CCNGG	1 cut(s)	500
SduI	GDGCHC	2 cut(s)	371, 382
SfaNI	GCATC	4 cut(s)	534, 556, 630, 681
SinI	GGWCC	1 cut(s)	442
SmlI	CTYRAG	1 cut(s)	90
SmoI	CTYRAG	1 cut(s)	90
Sse9I	AATT	4 cut(s)	232, 310, 529, 652
SsiI	CCGC	5 cut(s)	4, 286, 465, 506, 680
SspI	AATATT	1 cut(s)	212
SstI	GAGCTC	1 cut(s)	371
StyD4I	CCNGG	1 cut(s)	498
StyI	CCWWGG	1 cut(s)	201
TaaI	ACNGT	1 cut(s)	442
TaiI	ACGT	1 cut(s)	323
TaqI	TCGA	3 cut(s)	323, 396, 513
TasI	AATT	4 cut(s)	232, 310, 529, 652
TauI	GCSGC	1 cut(s)	467
TseI	GCWGC	1 cut(s)	694
TspDTI	ATGAA	3 cut(s)	290, 581, 651
TspGWI	ACGGA	1 cut(s)	67
Van91I	CCANNNNNTGG	2 cut(s)	55, 79
VneI	GTGCAC	1 cut(s)	378
VpaK11BI	GGWCC	1 cut(s)	442
XapI	RAATTY	3 cut(s)	232, 310, 652
Zsp2I	ATGCAT	1 cut(s)	549

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.