Rroxscaffold_1G00008580

Belongs to the tRNA nucleotidyltransferase poly(A) polymerase family

Basic Information

Type: gene
Biological Identity
rosa_roxburghii
GWHEROQ00000001
Physical Location & Seq
Reverse (-)
10866816 .. 10868529
1714 bp
Loading structure...
UTR
Exon/CDS
Intron
Rroxscaffold_1G00008580.1

Sequence Viewer

Length: 864 bp
ATGCATGGGGGCAAGATATGGCCCATGATCATCCCTTTGATCAAAAGAAACAAGTTCATGATCAATTCAATTGTGACTCTGCCATCGGACATCATTATGACCATACAAAGGGTCAAGAGCATGGTCAACATGACCCACTCAATTATCAATCAAGATGGAATATGGTGGCTGGATGTCATCATGATCATGCAAAGGGTCATCATGATCTATGATGATACTATACAATCCATAGAGGTGTCTCAATATGATGCTCGGAGAGTGGATAGAGGCAATCAAATTTCTCAAACACTCTCGTCCGATCGAGAAACAATATTTGATATGCCTATCTTTGAAGAAGAGATCAATTCACCACTATTTGGTGACTCTAAATATGATCTCGATGCGGAGCCAATCTACGATGAATATGATGATAATTACAATTTGATTACTGGTTCCAAAAATCATATGCAGGAGCTCAAGTTCTTTGAGACTCTTGATCATGAGAATTCTAACCAACAAGTGGTCAAATGTAATAGCCAATTTGTGGCTAATTCTGAAGATACCATGTTCCATGACATGGTAGTTGGCGACAAAGCCAATCTATGCTCATCTTCATCGCCAAAATTGCAATTGAAGATCATCTTTCACCAACCAACAAAGATACTTGGGGGCAAGATTACTCCTTCTACGAGCCAAATTTCTTCCAAGTCTTTGACGCAAAAATTTCGGAGAAGCTATCATTTTGGAGGCCTCTCTCCCGTTTGTCGTGAAGCATCCCAAAGGCCCACAAGTGTCACAGAAATAGTTGAGCGAAACACTTTGGAGCACGGTGAAATTCACCTCCTAAGCTTCGCAAAAGATCCACCACAAAAAATAGTTGCATGA

Protein Analysis

287

Amino Acids

32.88

Weight (kDa)

5.72

Isoelectric Point (pI)

46.53

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready

Orthologous Genes (Group: OG0000314)

Species Orthologous Gene IDs
fragaria_vesca FvH4_1g02272 FvH4_1g22661 FvH4_2g10242 FvH4_2g34051 FvH4_3g19221 FvH4_3g29651 FvH4_3g30891 FvH4_4g11061 FvH4_5g09250 FvH4_5g15302 FvH4_5g15303 FvH4_5g15304 FvH4_5g28521 FvH4_6g23591 FvH4_7g05710 FvH4_7g19520
pyrus_communis pycom07g06330
rosa_chinensis RchiOBHm_Chr5g0027301 RchiOBHm_Chr6g0251451 RchiOBHm_Chr6g0274861
rosa_laevigata RLG00000007850
rosa_multiflora Rmu_co8230721.1_g000001 Rmu_sc0000271.1_g000027 Rmu_sc0000303.1_g000024 Rmu_sc0000368.1_g000024 Rmu_sc0000621.1_g000037 Rmu_sc0000693.1_g000081 Rmu_sc0001229.1_g000006 Rmu_sc0001373.1_g000003 Rmu_sc0001459.1_g000001 Rmu_sc0001744.1_g000002 Rmu_sc0001909.1_g000002 Rmu_sc0002053.1_g000012 Rmu_sc0002060.1_g000015 Rmu_sc0002119.1_g000036 Rmu_sc0002177.1_g000007 Rmu_sc0002822.1_g000024 Rmu_sc0002965.1_g000015 Rmu_sc0003363.1_g000051 Rmu_sc0003500.1_g000013 Rmu_sc0004191.1_g000020 Rmu_sc0004904.1_g000032 Rmu_sc0005325.1_g000008 Rmu_sc0005947.1_g000040 Rmu_sc0006475.1_g000001 Rmu_sc0006522.1_g000019 Rmu_sc0007102.1_g000005 Rmu_sc0007810.1_g000003 Rmu_sc0008339.1_g000025 Rmu_sc0008698.1_g000004 Rmu_sc0009313.1_g000006 Rmu_sc0009850.1_g000006 Rmu_sc0010598.1_g000003 Rmu_sc0011162.1_g000002 Rmu_sc0011824.1_g000004 Rmu_sc0011900.1_g000010 Rmu_sc0012291.1_g000006 Rmu_sc0012619.1_g000003 Rmu_sc0014679.1_g000001 Rmu_sc0019053.1_g000001 Rmu_sc0021462.1_g000003 Rmu_sc0024172.1_g000001 Rmu_sc0024173.1_g000001 Rmu_ssc0000052.1_g000016 Rmu_ssc0000392.1_g000010 Rmu_ssc0000421.1_g000062 Rmu_ssc0000479.1_g000006
rosa_roxburghii Rroxscaffold_153G00436600 Rroxscaffold_1G00008580 Rroxscaffold_1G00016770 Rroxscaffold_1G00029550 Rroxscaffold_1G00036450 Rroxscaffold_1G00040410 Rroxscaffold_1G00047110 Rroxscaffold_1G00060570 Rroxscaffold_2G00081500 Rroxscaffold_2G00081510 Rroxscaffold_2G00086080 Rroxscaffold_2G00099620 Rroxscaffold_2G00099630 Rroxscaffold_2G00099640 Rroxscaffold_2G00109170 Rroxscaffold_2G00127750 Rroxscaffold_2G00128590 Rroxscaffold_2G00130780 Rroxscaffold_2G00131040 Rroxscaffold_2G00143160 Rroxscaffold_3G00229280 Rroxscaffold_3G00229290 Rroxscaffold_3G00229970 Rroxscaffold_3G00242860 Rroxscaffold_3G00242890 Rroxscaffold_3G00242900 Rroxscaffold_3G00248200 Rroxscaffold_4G00284550 Rroxscaffold_4G00288780 Rroxscaffold_4G00298620 Rroxscaffold_4G00298630 Rroxscaffold_4G00312420 Rroxscaffold_4G00320310 Rroxscaffold_4G00322220 Rroxscaffold_4G00323600 Rroxscaffold_4G00331830 Rroxscaffold_4G00332010 Rroxscaffold_4G00332020 Rroxscaffold_5G00344470 Rroxscaffold_5G00345310 Rroxscaffold_5G00356120 Rroxscaffold_5G00368700 Rroxscaffold_5G00379820 Rroxscaffold_5G00382480 Rroxscaffold_6G00395080 Rroxscaffold_6G00405520 Rroxscaffold_6G00428210 Rroxscaffold_7G00193460
rosa_samantha Rh7CG413200 Rh7DG284900

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB7I CCANNNNNTGG 4 cut(s) 356, 499, 523, 556
AciI CCGC 1 cut(s) 383
AclWI GGATC 1 cut(s) 833
AcsI RAATTY 5 cut(s) 276, 484, 675, 701, 813
AcuI CTGAAG 1 cut(s) 555
AfiI CCNNNNNNNGG 5 cut(s) 108, 356, 499, 523, 556
AgsI TTSAA 3 cut(s) 69, 332, 613
AloI GAACNNNNNNTCC 2 cut(s) 443, 475
AluBI AGCT 3 cut(s) 454, 714, 828
AluI AGCT 3 cut(s) 454, 714, 828
Alw21I GWGCWC 2 cut(s) 456, 807
Alw26I GTCTC 2 cut(s) 243, 461
AlwI GGATC 1 cut(s) 833
AoxI GGCC 3 cut(s) 20, 727, 761
ApoI RAATTY 5 cut(s) 276, 484, 675, 701, 813
AspS9I GGNCC 2 cut(s) 21, 762
AsuHPI GGTGA 5 cut(s) 339, 371, 617, 809, 821
BanII GRGCYC 1 cut(s) 456
Bbv12I GWGCWC 2 cut(s) 456, 807
BccI CCATC 2 cut(s) 91, 149
BcgI CGANNNNNNTGC 2 cut(s) 686, 720
BclI TGATCA 5 cut(s) 27, 39, 60, 183, 475
BcoDI GTCTC 2 cut(s) 243, 461
BmgT120I GGNCC 2 cut(s) 21, 762
BmiI GGNNCC 2 cut(s) 387, 433
BmsI GCATC 3 cut(s) 238, 370, 761
Bpu10I CCTNAGC 1 cut(s) 824
BpuEI CTTGAG 1 cut(s) 440
BsaXI ACNNNNNCTCC 2 cut(s) 443, 473
Bsc4I CCNNNNNNNGG 5 cut(s) 108, 356, 499, 523, 556
Bse1I ACTGG 1 cut(s) 433
BseGI GGATG 3 cut(s) 30, 178, 752
BseLI CCNNNNNNNGG 5 cut(s) 108, 356, 499, 523, 556
BseNI ACTGG 1 cut(s) 433
Bsh1285I CGRYCG 1 cut(s) 301
BshFI GGCC 3 cut(s) 22, 729, 763
BsiEI CGRYCG 1 cut(s) 301
BsiHKAI GWGCWC 2 cut(s) 456, 807
BslI CCNNNNNNNGG 5 cut(s) 108, 356, 499, 523, 556
BsmAI GTCTC 2 cut(s) 243, 461
BsnI GGCC 3 cut(s) 22, 729, 763
Bsp1286I GDGCHC 2 cut(s) 456, 807
BspACI CCGC 1 cut(s) 383
BspANI GGCC 3 cut(s) 22, 729, 763
BspHI TCATGA 4 cut(s) 57, 180, 201, 478
BspLI GGNNCC 2 cut(s) 387, 433
BspPI GGATC 1 cut(s) 833
BsrI ACTGG 1 cut(s) 433
Bst4CI ACNGT 1 cut(s) 809
Bst6I CTCTTC 1 cut(s) 330
BstDEI CTNAG 1 cut(s) 824
BstF5I GGATG 3 cut(s) 30, 178, 752
BstMAI GTCTC 2 cut(s) 243, 461
BstMCI CGRYCG 1 cut(s) 301
BstMWI GCNNNNNNNGC 1 cut(s) 604
BstX2I RGATCY 1 cut(s) 838
BstYI RGATCY 1 cut(s) 838
BsuRI GGCC 3 cut(s) 22, 729, 763
BtgZI GCGATG 1 cut(s) 579
BtsCI GGATG 3 cut(s) 30, 178, 752
CciI TCATGA 4 cut(s) 57, 180, 201, 478
Cfr13I GGNCC 2 cut(s) 21, 762
CseI GACGC 1 cut(s) 703
DdeI CTNAG 1 cut(s) 824
Eam1104I CTCTTC 1 cut(s) 330
EarI CTCTTC 1 cut(s) 330
Ecl136II GAGCTC 1 cut(s) 454
Eco147I AGGCCT 1 cut(s) 729
Eco24I GRGCYC 1 cut(s) 456
Eco53kI GAGCTC 1 cut(s) 454
Eco57I CTGAAG 1 cut(s) 555
EcoICRI GAGCTC 1 cut(s) 454
EcoRI GAATTC 1 cut(s) 484
EcoT22I ATGCAT 1 cut(s) 6
EcoT38I GRGCYC 1 cut(s) 456
FalI AAGNNNNNCTT 2 cut(s) 605, 637
FauNDI CATATG 1 cut(s) 444
FbaI TGATCA 5 cut(s) 27, 39, 60, 183, 475
FokI GGATG 3 cut(s) 17, 185, 739
FriOI GRGCYC 1 cut(s) 456
HaeIII GGCC 3 cut(s) 22, 729, 763
HgaI GACGC 1 cut(s) 703
HincII GTYRAC 1 cut(s) 127
HindII GTYRAC 1 cut(s) 127
HindIII AAGCTT 1 cut(s) 826
HinfI GANTC 3 cut(s) 76, 362, 469
HphI GGTGA 5 cut(s) 339, 371, 617, 809, 821
Hpy166II GTNNAC 1 cut(s) 127
Hpy188I TCNGA 5 cut(s) 88, 255, 298, 535, 708
Hpy8I GTNNAC 1 cut(s) 127
HpyAV CCTTC 1 cut(s) 672
HpyCH4III ACNGT 1 cut(s) 809
HpyCH4V TGCA 5 cut(s) 4, 190, 448, 607, 860
HpyF10VI GCNNNNNNNGC 1 cut(s) 604
HpyF3I CTNAG 1 cut(s) 824
Ksp22I TGATCA 5 cut(s) 27, 39, 60, 183, 475
LmnI GCTCC 3 cut(s) 385, 451, 802
LpnPI CCDG 3 cut(s) 155, 414, 434
LweI GCATC 3 cut(s) 238, 370, 761
MaeIII GTNAC 3 cut(s) 73, 359, 772
MboII GAAGA 6 cut(s) 344, 347, 548, 582, 625, 672
MfeI CAATTG 2 cut(s) 69, 608
MflI RGATCY 1 cut(s) 838
MhlI GDGCHC 2 cut(s) 456, 807
MlyI GAGTC 3 cut(s) 70, 356, 463
MnlI CCTC 5 cut(s) 226, 260, 719, 740, 830
Mph1103I ATGCAT 1 cut(s) 6
MslI CAYNNNNRTG 3 cut(s) 95, 185, 233
MunI CAATTG 2 cut(s) 69, 608
MwoI GCNNNNNNNGC 1 cut(s) 604
NdeI CATATG 1 cut(s) 444
NlaIV GGNNCC 2 cut(s) 387, 433
NmuCI GTSAC 3 cut(s) 73, 359, 772
NsiI ATGCAT 1 cut(s) 6
PagI TCATGA 4 cut(s) 57, 180, 201, 478
PceI AGGCCT 1 cut(s) 729
PflMI CCANNNNNTGG 4 cut(s) 356, 499, 523, 556
Ple19I CGATCG 1 cut(s) 301
PleI GAGTC 3 cut(s) 70, 356, 463
PpsI GAGTC 3 cut(s) 70, 356, 463
Psp124BI GAGCTC 1 cut(s) 456
PspN4I GGNNCC 2 cut(s) 387, 433
PspPI GGNCC 2 cut(s) 21, 762
PsuI RGATCY 1 cut(s) 838
PvuI CGATCG 1 cut(s) 301
RseI CAYNNNNRTG 3 cut(s) 95, 185, 233
SacI GAGCTC 1 cut(s) 456
Sau96I GGNCC 2 cut(s) 21, 762
SchI GAGTC 3 cut(s) 70, 356, 463
SduI GDGCHC 2 cut(s) 456, 807
SetI ASST 5 cut(s) 237, 456, 716, 822, 830
SfaNI GCATC 3 cut(s) 238, 370, 761
SmiMI CAYNNNNRTG 3 cut(s) 95, 185, 233
SmlI CTYRAG 1 cut(s) 455
SmoI CTYRAG 1 cut(s) 455
SseBI AGGCCT 1 cut(s) 729
SsiI CCGC 1 cut(s) 383
SspI AATATT 1 cut(s) 312
SstI GAGCTC 1 cut(s) 456
StuI AGGCCT 1 cut(s) 729
TaaI ACNGT 1 cut(s) 809
TaqI TCGA 2 cut(s) 301, 378
TseFI GTSAC 3 cut(s) 73, 359, 772
Tsp45I GTSAC 3 cut(s) 73, 359, 772
TspDTI ATGAA 3 cut(s) 46, 414, 582
Van91I CCANNNNNTGG 4 cut(s) 356, 499, 523, 556
XapI RAATTY 5 cut(s) 276, 484, 675, 701, 813
Zsp2I ATGCAT 1 cut(s) 6
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.