Rmu_sc0000693.1_g000081

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_multiflora
Rmu_sc0000693.1
OG0000314
Physical Location & Seq
Reverse (-)
398090 .. 400896
2807 bp
Loading structure...
UTR
Exon/CDS
Intron
Rmu_sc0000693.1_g000081.1.cds

Sequence Viewer

Length: 1260 bp
atggacaatgttgccaccattggcgataccgtcattaatgatgagtttatgcctattcccatcccaaagggggcaagcattgatgaacagctcgcgatcatcatggccaacatcgagaggaataaagaaaagcaagccagggacatggccagtttggttgcaaaaacaaagcagaggtttcgcgattgggacctacaaattgagcagaacgctcgagaagctggagaacaattccataagcctttcttgagcagcgacaaacagaccactcaacatgctgcgaacatcacatctgagttcacaaccttacgcgaggaaggttccagcttggctaattcgcagcaaggcgaattggaaggtcaaaaacctgctcgcgaagagatcgtttctgagactaacttgcctgtaggtggaaatcaacctaagggtctcactggtgagtcacaaccttacacagaggctgtgcatggaaaaggtcatcaacaagattgttcttctgacaatataattgtctctgaacaaatatctgatttctccactgatcaagccaaatatgtggctactgatcagatgcatggggggcaagatatgacccatgatcatccctttgatcaagagaagttggcgacagttggcgacaaagccgatcttgggacaccgtcatcttccaaattacaattggagatcatgtctcgtcaaccaacaaagatacttggggggcaagaatacccctctcacgagccaaattcctccaaattcttcaacgagaagtatctttgttcttttcctacaagctctcacaggagagatttttaccctacaaattttgatacatcgaagcttggagtgaagcatagatgccccccccccccggtggccttctggaggttagccaaatatacggtgatcacactcctagtcctagtcttctcagaagccgactttcagtgccaccaaaccctctgtcaacgtacttcggtcctagtctcctcgggagccgacggtagtgccgcgaccacaacggttacggaaccagccaagcaaggtggttctcgctctgctcgatctacaacatcgagtatcgatttggtgattttcaagaagctcagtaaaagtcctcatcacgaggcacaaagaccccagcgacgaggttggtgctctcctcgtctacaatcacttgaaagaagtcaggtcaagggacacccccgacgaccgcacccgaacggtgctggcacgccctcgcagaaaagagactgttga
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

419

Amino Acids

46.4

Weight (kDa)

6.74

Isoelectric Point (pI)

57.29

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0000314)

Species Orthologous Gene IDs
fragaria_vesca FvH4_1g02272 FvH4_1g22661 FvH4_2g10242 FvH4_2g34051 FvH4_3g19221 FvH4_3g29651 FvH4_3g30891 FvH4_4g11061 FvH4_5g09250 FvH4_5g15302 FvH4_5g15303 FvH4_5g15304 FvH4_5g28521 FvH4_6g23591 FvH4_7g05710 FvH4_7g19520
pyrus_communis pycom07g06330
rosa_chinensis RchiOBHm_Chr5g0027301 RchiOBHm_Chr6g0251451 RchiOBHm_Chr6g0274861
rosa_laevigata RLG00000007850
rosa_multiflora Rmu_co8230721.1_g000001 Rmu_sc0000271.1_g000027 Rmu_sc0000303.1_g000024 Rmu_sc0000368.1_g000024 Rmu_sc0000621.1_g000037 Rmu_sc0000693.1_g000081 Rmu_sc0001229.1_g000006 Rmu_sc0001373.1_g000003 Rmu_sc0001459.1_g000001 Rmu_sc0001744.1_g000002 Rmu_sc0001909.1_g000002 Rmu_sc0002053.1_g000012 Rmu_sc0002060.1_g000015 Rmu_sc0002119.1_g000036 Rmu_sc0002177.1_g000007 Rmu_sc0002822.1_g000024 Rmu_sc0002965.1_g000015 Rmu_sc0003363.1_g000051 Rmu_sc0003500.1_g000013 Rmu_sc0004191.1_g000020 Rmu_sc0004904.1_g000032 Rmu_sc0005325.1_g000008 Rmu_sc0005947.1_g000040 Rmu_sc0006475.1_g000001 Rmu_sc0006522.1_g000019 Rmu_sc0007102.1_g000005 Rmu_sc0007810.1_g000003 Rmu_sc0008339.1_g000025 Rmu_sc0008698.1_g000004 Rmu_sc0009313.1_g000006 Rmu_sc0009850.1_g000006 Rmu_sc0010598.1_g000003 Rmu_sc0011162.1_g000002 Rmu_sc0011824.1_g000004 Rmu_sc0011900.1_g000010 Rmu_sc0012291.1_g000006 Rmu_sc0012619.1_g000003 Rmu_sc0014679.1_g000001 Rmu_sc0019053.1_g000001 Rmu_sc0021462.1_g000003 Rmu_sc0024172.1_g000001 Rmu_sc0024173.1_g000001 Rmu_ssc0000052.1_g000016 Rmu_ssc0000392.1_g000010 Rmu_ssc0000421.1_g000062 Rmu_ssc0000479.1_g000006
rosa_roxburghii Rroxscaffold_153G00436600 Rroxscaffold_1G00008580 Rroxscaffold_1G00016770 Rroxscaffold_1G00029550 Rroxscaffold_1G00036450 Rroxscaffold_1G00040410 Rroxscaffold_1G00047110 Rroxscaffold_1G00060570 Rroxscaffold_2G00081500 Rroxscaffold_2G00081510 Rroxscaffold_2G00086080 Rroxscaffold_2G00099620 Rroxscaffold_2G00099630 Rroxscaffold_2G00099640 Rroxscaffold_2G00109170 Rroxscaffold_2G00127750 Rroxscaffold_2G00128590 Rroxscaffold_2G00130780 Rroxscaffold_2G00131040 Rroxscaffold_2G00143160 Rroxscaffold_3G00229280 Rroxscaffold_3G00229290 Rroxscaffold_3G00229970 Rroxscaffold_3G00242860 Rroxscaffold_3G00242890 Rroxscaffold_3G00242900 Rroxscaffold_3G00248200 Rroxscaffold_4G00284550 Rroxscaffold_4G00288780 Rroxscaffold_4G00298620 Rroxscaffold_4G00298630 Rroxscaffold_4G00312420 Rroxscaffold_4G00320310 Rroxscaffold_4G00322220 Rroxscaffold_4G00323600 Rroxscaffold_4G00331830 Rroxscaffold_4G00332010 Rroxscaffold_4G00332020 Rroxscaffold_5G00344470 Rroxscaffold_5G00345310 Rroxscaffold_5G00356120 Rroxscaffold_5G00368700 Rroxscaffold_5G00379820 Rroxscaffold_5G00382480 Rroxscaffold_6G00395080 Rroxscaffold_6G00405520 Rroxscaffold_6G00428210 Rroxscaffold_7G00193460
rosa_samantha Rh7CG413200 Rh7DG284900

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc36I ACCTGC 1 cut(s) 376
AccI GTMKAC 1 cut(s) 1168
AccII CGCG 5 cut(s) 95, 183, 312, 375, 1013
AciI CCGC 2 cut(s) 1011, 1214
AcoI YGGCCR 2 cut(s) 105, 147
AcsI RAATTY 3 cut(s) 745, 755, 823
AfaI GTAC 1 cut(s) 973
AfiI CCNNNNNNNGG 6 cut(s) 70, 410, 651, 871, 874, 885
AgsI TTSAA 3 cut(s) 763, 1099, 1181
AjnI CCWGG 1 cut(s) 137
AluBI AGCT 6 cut(s) 91, 221, 327, 795, 841, 1105
AluI AGCT 6 cut(s) 91, 221, 327, 795, 841, 1105
Alw21I GWGCWC 1 cut(s) 1160
Alw26I GTCTC 6 cut(s) 386, 434, 517, 696, 991, 1245
AlwNI CAGNNNCTG 1 cut(s) 461
Ama87I CYCGRG 2 cut(s) 213, 991
AoxI GGCC 3 cut(s) 105, 147, 876
ApeKI GCWGC 3 cut(s) 252, 278, 340
ApoI RAATTY 3 cut(s) 745, 755, 823
ArsI GACNNNNNNTTYG 2 cut(s) 949, 981
AseI ATTAAT 1 cut(s) 36
AspS9I GGNCC 2 cut(s) 190, 979
AsuC2I CCSGG 1 cut(s) 872
AsuHPI GGTGA 3 cut(s) 449, 916, 1102
AvaI CYCGRG 2 cut(s) 213, 991
AvaII GGWCC 2 cut(s) 190, 979
AxyI CCTNAGG 1 cut(s) 423
BalI TGGCCA 2 cut(s) 107, 149
BauI CACGAG 2 cut(s) 737, 1124
BbsI GAAGAC 1 cut(s) 919
Bbv12I GWGCWC 1 cut(s) 1160
BbvI GCAGC 3 cut(s) 264, 265, 352
BccI CCATC 1 cut(s) 68
BcgI CGANNNNNNTGC 8 cut(s) 161, 194, 195, 228, 989, 1023, 1137, 1171
BciT130I CCWGG 1 cut(s) 139
BclI TGATCA 5 cut(s) 541, 565, 598, 610, 906
BcnI CCSGG 1 cut(s) 872
BcoDI GTCTC 6 cut(s) 386, 434, 517, 696, 991, 1245
BfaI CTAG 3 cut(s) 917, 923, 983
BfmI CTRYAG 1 cut(s) 405
BfuAI ACCTGC 1 cut(s) 376
BisI GCNGC 4 cut(s) 253, 279, 341, 1011
BlsI GCNGC 4 cut(s) 254, 280, 342, 1012
Bme1390I CCNGG 2 cut(s) 139, 872
Bme18I GGWCC 2 cut(s) 190, 979
BmeT110I CYCGRG 2 cut(s) 213, 991
BmgT120I GGNCC 2 cut(s) 190, 979
BmiI GGNNCC 4 cut(s) 191, 322, 997, 1032
BmrFI CCNGG 2 cut(s) 139, 872
BmsI GCATC 2 cut(s) 561, 848
BpiI GAAGAC 1 cut(s) 919
BpmI CTGGAG 2 cut(s) 243, 904
BpuEI CTTGAG 1 cut(s) 268
BpuMI CCSGG 1 cut(s) 872
Bsa29I ATCGAT 1 cut(s) 1083
BsaI GGTCTC 1 cut(s) 434
BsaJI CCNNGG 3 cut(s) 138, 870, 990
BsaXI ACNNNNNCTCC 2 cut(s) 674, 704
Bsc4I CCNNNNNNNGG 6 cut(s) 70, 410, 651, 871, 874, 885
Bse1I ACTGG 2 cut(s) 150, 439
Bse21I CCTNAGG 1 cut(s) 423
BseBI CCWGG 1 cut(s) 139
BseCI ATCGAT 1 cut(s) 1083
BseDI CCNNGG 3 cut(s) 138, 870, 990
BseGI GGATG 2 cut(s) 60, 601
BseLI CCNNNNNNNGG 6 cut(s) 70, 410, 651, 871, 874, 885
BseMII CTCAG 4 cut(s) 285, 381, 945, 1120
BseNI ACTGG 2 cut(s) 150, 439
BseRI GAGGAG 2 cut(s) 979, 1152
BseXI GCAGC 3 cut(s) 264, 265, 352
BseYI CCCAGC 1 cut(s) 1140
Bsh1236I CGCG 5 cut(s) 95, 183, 312, 375, 1013
Bsh1285I CGRYCG 1 cut(s) 1214
BshFI GGCC 3 cut(s) 107, 149, 878
BshVI ATCGAT 1 cut(s) 1083
BsiEI CGRYCG 1 cut(s) 1214
BsiHKAI GWGCWC 1 cut(s) 1160
BsiHKCI CYCGRG 2 cut(s) 213, 991
BsiSI CCGG 1 cut(s) 872
BslFI GGGAC 4 cut(s) 155, 203, 667, 1212
BslI CCNNNNNNNGG 6 cut(s) 70, 410, 651, 871, 874, 885
BsmAI GTCTC 6 cut(s) 386, 434, 517, 696, 991, 1245
BsmFI GGGAC 4 cut(s) 155, 203, 667, 1212
BsnI GGCC 3 cut(s) 107, 149, 878
Bso31I GGTCTC 1 cut(s) 434
BsoBI CYCGRG 2 cut(s) 213, 991
Bsp1286I GDGCHC 1 cut(s) 1160
Bsp68I TCGCGA 3 cut(s) 95, 183, 375
BspACI CCGC 2 cut(s) 1011, 1214
BspANI GGCC 3 cut(s) 107, 149, 878
BspCNI CTCAG 4 cut(s) 286, 382, 944, 1119
BspDI ATCGAT 1 cut(s) 1083
BspFNI CGCG 5 cut(s) 95, 183, 312, 375, 1013
BspLI GGNNCC 4 cut(s) 191, 322, 997, 1032
BspMI ACCTGC 1 cut(s) 376
BspTNI GGTCTC 1 cut(s) 434
BsrI ACTGG 2 cut(s) 150, 439
BssECI CCNNGG 3 cut(s) 138, 870, 990
BssSI CACGAG 2 cut(s) 737, 1124
Bst2BI CACGAG 2 cut(s) 737, 1124
Bst2UI CCWGG 1 cut(s) 139
Bst4CI ACNGT 8 cut(s) 31, 631, 660, 904, 1004, 1024, 1226, 1256
Bst6I CTCTTC 1 cut(s) 372
BstC8I GCNNGC 6 cut(s) 76, 93, 135, 373, 1231, 1235
BstDEI CTNAG 5 cut(s) 294, 390, 423, 931, 1106
BstENI CCTNNNNNAGG 1 cut(s) 883
BstF5I GGATG 2 cut(s) 60, 601
BstFNI CGCG 5 cut(s) 95, 183, 312, 375, 1013
BstMAI GTCTC 6 cut(s) 386, 434, 517, 696, 991, 1245
BstMCI CGRYCG 1 cut(s) 1214
BstMWI GCNNNNNNNGC 2 cut(s) 218, 580
BstNI CCWGG 1 cut(s) 139
BstNSI RCATGY 1 cut(s) 278
BstSCI CCNGG 2 cut(s) 137, 870
BstSFI CTRYAG 1 cut(s) 405
BstUI CGCG 5 cut(s) 95, 183, 312, 375, 1013
BstV1I GCAGC 3 cut(s) 264, 265, 352
BstV2I GAAGAC 1 cut(s) 919
BstXI CCANNNNNNTGG 2 cut(s) 145, 556
Bsu15I ATCGAT 1 cut(s) 1083
Bsu36I CCTNAGG 1 cut(s) 423
BsuRI GGCC 3 cut(s) 107, 149, 878
BsuTUI ATCGAT 1 cut(s) 1083
BtsCI GGATG 2 cut(s) 60, 601
BtsIMutI CAGTG 3 cut(s) 432, 537, 953
BtuMI TCGCGA 3 cut(s) 95, 183, 375
BveI ACCTGC 1 cut(s) 376
Cac8I GCNNGC 6 cut(s) 76, 93, 135, 373, 1231, 1235
CaiI CAGNNNCTG 1 cut(s) 461
Cfr13I GGNCC 2 cut(s) 190, 979
ClaI ATCGAT 1 cut(s) 1083
Csp6I GTAC 1 cut(s) 972
CspCI CAANNNNNGTGG 2 cut(s) 1027, 1062
CviAII CATG 7 cut(s) 103, 145, 275, 467, 575, 596, 688
CviQI GTAC 1 cut(s) 972
DdeI CTNAG 5 cut(s) 294, 390, 423, 931, 1106
EaeI YGGCCR 2 cut(s) 105, 147
Eam1104I CTCTTC 1 cut(s) 372
EarI CTCTTC 1 cut(s) 372
Eco31I GGTCTC 1 cut(s) 434
Eco47I GGWCC 2 cut(s) 190, 979
Eco81I CCTNAGG 1 cut(s) 423
Eco88I CYCGRG 2 cut(s) 213, 991
EcoNI CCTNNNNNAGG 1 cut(s) 883
EcoO109I RGGNCCY 1 cut(s) 190
EcoRII CCWGG 1 cut(s) 137
EcoT22I ATGCAT 1 cut(s) 576
FaeI CATG 7 cut(s) 106, 148, 278, 470, 578, 599, 691
FalI AAGNNNNNCTT 4 cut(s) 230, 262, 633, 665
FaqI GGGAC 4 cut(s) 155, 203, 667, 1212
FatI CATG 7 cut(s) 102, 144, 274, 466, 574, 595, 687
FbaI TGATCA 5 cut(s) 541, 565, 598, 610, 906
FblI GTMKAC 1 cut(s) 1168
Fnu4HI GCNGC 4 cut(s) 253, 279, 341, 1011
FokI GGATG 2 cut(s) 47, 588
Fsp4HI GCNGC 4 cut(s) 253, 279, 341, 1011
FspBI CTAG 3 cut(s) 917, 923, 983
GluI GCNGC 4 cut(s) 253, 279, 341, 1011
GsaI CCCAGC 1 cut(s) 1144
GsuI CTGGAG 2 cut(s) 243, 904
HaeIII GGCC 3 cut(s) 107, 149, 878
HapII CCGG 1 cut(s) 872
Hin1II CATG 7 cut(s) 106, 148, 278, 470, 578, 599, 691
HincII GTYRAC 2 cut(s) 698, 968
HindII GTYRAC 2 cut(s) 698, 968
HindIII AAGCTT 1 cut(s) 839
HinfI GANTC 1 cut(s) 440
HpaII CCGG 1 cut(s) 872
HphI GGTGA 3 cut(s) 449, 916, 1102
Hpy166II GTNNAC 4 cut(s) 300, 698, 968, 1169
Hpy188I TCNGA 7 cut(s) 295, 391, 499, 517, 529, 570, 934
Hpy8I GTNNAC 4 cut(s) 300, 698, 968, 1169
Hpy99I CGWCG 3 cut(s) 1004, 1149, 1212
HpyAV CCTTC 3 cut(s) 311, 350, 889
HpyCH4III ACNGT 8 cut(s) 31, 631, 660, 904, 1004, 1024, 1226, 1256
HpyCH4IV ACGT 1 cut(s) 970
HpyCH4V TGCA 3 cut(s) 161, 466, 574
HpyF10VI GCNNNNNNNGC 2 cut(s) 218, 580
HpyF3I CTNAG 5 cut(s) 294, 390, 423, 931, 1106
HpySE526I ACGT 1 cut(s) 970
Hsp92II CATG 7 cut(s) 106, 148, 278, 470, 578, 599, 691
Ksp22I TGATCA 5 cut(s) 541, 565, 598, 610, 906
LmnI GCTCC 1 cut(s) 995
Lsp1109I GCAGC 3 cut(s) 264, 265, 352
LweI GCATC 2 cut(s) 561, 848
MaeI CTAG 3 cut(s) 917, 923, 983
MaeII ACGT 1 cut(s) 970
MaeIII GTNAC 2 cut(s) 441, 1024
MboII GAAGA 5 cut(s) 389, 486, 657, 751, 919
MfeI CAATTG 1 cut(s) 677
MhlI GDGCHC 1 cut(s) 1160
MlsI TGGCCA 2 cut(s) 107, 149
MluNI TGGCCA 2 cut(s) 107, 149
MlyI GAGTC 1 cut(s) 449
Mox20I TGGCCA 2 cut(s) 107, 149
Mph1103I ATGCAT 1 cut(s) 576
MscI TGGCCA 2 cut(s) 107, 149
MseI TTAA 1 cut(s) 36
Msp20I TGGCCA 2 cut(s) 107, 149
MspI CCGG 1 cut(s) 872
MspR9I CCNGG 2 cut(s) 139, 872
MunI CAATTG 1 cut(s) 677
MvaI CCWGG 1 cut(s) 139
MvnI CGCG 5 cut(s) 95, 183, 312, 375, 1013
MwoI GCNNNNNNNGC 2 cut(s) 218, 580
NciI CCSGG 1 cut(s) 872
NlaIII CATG 7 cut(s) 106, 148, 278, 470, 578, 599, 691
NlaIV GGNNCC 4 cut(s) 191, 322, 997, 1032
NmuCI GTSAC 1 cut(s) 441
NruI TCGCGA 3 cut(s) 95, 183, 375
NsiI ATGCAT 1 cut(s) 576
NspI RCATGY 1 cut(s) 278
PaeR7I CTCGAG 1 cut(s) 213
PcsI WCGNNNNNNNCGW 1 cut(s) 1060
PflFI GACNNNGTC 1 cut(s) 658
PkrI GCNGC 4 cut(s) 254, 280, 342, 1012
PleI GAGTC 1 cut(s) 448
PpsI GAGTC 1 cut(s) 448
PpuMI RGGWCCY 1 cut(s) 190
PshBI ATTAAT 1 cut(s) 36
Psp5II RGGWCCY 1 cut(s) 190
Psp6I CCWGG 1 cut(s) 137
PspFI CCCAGC 1 cut(s) 1140
PspGI CCWGG 1 cut(s) 137
PspN4I GGNNCC 4 cut(s) 191, 322, 997, 1032
PspPI GGNCC 2 cut(s) 190, 979
PspPPI RGGWCCY 1 cut(s) 190
PstNI CAGNNNCTG 1 cut(s) 461
PsyI GACNNNGTC 1 cut(s) 658
RruI TCGCGA 3 cut(s) 95, 183, 375
RsaI GTAC 1 cut(s) 973
RsaNI GTAC 1 cut(s) 972
SaqAI TTAA 1 cut(s) 36
SatI GCNGC 4 cut(s) 253, 279, 341, 1011
Sau96I GGNCC 2 cut(s) 190, 979
SchI GAGTC 1 cut(s) 449
ScrFI CCNGG 2 cut(s) 139, 872
SduI GDGCHC 1 cut(s) 1160
SfaNI GCATC 2 cut(s) 561, 848
SfcI CTRYAG 1 cut(s) 405
Sfr274I CTCGAG 1 cut(s) 213
SinI GGWCC 2 cut(s) 190, 979
SlaI CTCGAG 1 cut(s) 213
SmlI CTYRAG 2 cut(s) 213, 247
SmoI CTYRAG 2 cut(s) 213, 247
SsiI CCGC 2 cut(s) 1011, 1214
SspMI CTAG 3 cut(s) 917, 923, 983
StyD4I CCNGG 2 cut(s) 137, 870
TaaI ACNGT 8 cut(s) 31, 631, 660, 904, 1004, 1024, 1226, 1256
TaiI ACGT 1 cut(s) 973
TaqI TCGA 6 cut(s) 114, 214, 836, 1063, 1076, 1083
TaqII GACCGA 1 cut(s) 967
TauI GCSGC 1 cut(s) 1013
Tru1I TTAA 1 cut(s) 36
Tru9I TTAA 1 cut(s) 36
TscAI CASTG 3 cut(s) 439, 544, 953
TseFI GTSAC 1 cut(s) 441
TseI GCWGC 3 cut(s) 252, 278, 340
Tsp45I GTSAC 1 cut(s) 441
TspDTI ATGAA 1 cut(s) 99
TspGWI ACGGA 1 cut(s) 1043
TspRI CASTG 3 cut(s) 439, 544, 953
Tth111I GACNNNGTC 1 cut(s) 658
VpaK11BI GGWCC 2 cut(s) 190, 979
VspI ATTAAT 1 cut(s) 36
XagI CCTNNNNNAGG 1 cut(s) 883
XapI RAATTY 3 cut(s) 745, 755, 823
XceI RCATGY 1 cut(s) 278
XcmI CCANNNNNNNNNTGG 1 cut(s) 676
XhoI CTCGAG 1 cut(s) 213
XmiI GTMKAC 1 cut(s) 1168
XspI CTAG 3 cut(s) 917, 923, 983
Zsp2I ATGCAT 1 cut(s) 576
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.