RchiOBHm_Chr5g0027301

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_chinensis
5
OG0000314
Physical Location & Seq
Reverse (-)
21321224 .. 21323949
2726 bp
Loading structure...
UTR
Exon/CDS
Intron
PRQ30685

Sequence Viewer

Length: 408 bp
ATGAAATCTGTAGAGTCTTCGCCTTTTTGGTCGTGTAACTCTAGAGTGCGGCAGGTGCTAGTGGCAGTGCAGGTGGTGACGGAGCAGATTGAGGCGAGCGCAGGTCGTGGCGGAACGACCACGCGTCGATTCCAAAGTCATGATTTTTTTGCTGGTGTGTTGATGGTGCTCATATCAGTCACTAGAGGCCAAAAGATCTGTCAGTGTGTAAGATGCTTCTTTGTTTTTCTTGGTTACAAGTGTTTGATGTTGCTTTTGATGCTAGTCTATATATATTGGGACCTCGCAAACTTGGCAATTAAAGCAAAGCCAACAAACCACCAAGTGACCAGCTTTGGTTACAAGTGTGTTGGATGCTTCTTTCTATCTTTCTTTTTCTTTAGATTGATTCATAATATAAAAATATAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

135

Amino Acids

15.47

Weight (kDa)

9.63

Isoelectric Point (pI)

28.96

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0000314)

Species Orthologous Gene IDs
fragaria_vesca FvH4_1g02272 FvH4_1g22661 FvH4_2g10242 FvH4_2g34051 FvH4_3g19221 FvH4_3g29651 FvH4_3g30891 FvH4_4g11061 FvH4_5g09250 FvH4_5g15302 FvH4_5g15303 FvH4_5g15304 FvH4_5g28521 FvH4_6g23591 FvH4_7g05710 FvH4_7g19520
pyrus_communis pycom07g06330
rosa_chinensis RchiOBHm_Chr5g0027301 RchiOBHm_Chr6g0251451 RchiOBHm_Chr6g0274861
rosa_laevigata RLG00000007850
rosa_multiflora Rmu_co8230721.1_g000001 Rmu_sc0000271.1_g000027 Rmu_sc0000303.1_g000024 Rmu_sc0000368.1_g000024 Rmu_sc0000621.1_g000037 Rmu_sc0000693.1_g000081 Rmu_sc0001229.1_g000006 Rmu_sc0001373.1_g000003 Rmu_sc0001459.1_g000001 Rmu_sc0001744.1_g000002 Rmu_sc0001909.1_g000002 Rmu_sc0002053.1_g000012 Rmu_sc0002060.1_g000015 Rmu_sc0002119.1_g000036 Rmu_sc0002177.1_g000007 Rmu_sc0002822.1_g000024 Rmu_sc0002965.1_g000015 Rmu_sc0003363.1_g000051 Rmu_sc0003500.1_g000013 Rmu_sc0004191.1_g000020 Rmu_sc0004904.1_g000032 Rmu_sc0005325.1_g000008 Rmu_sc0005947.1_g000040 Rmu_sc0006475.1_g000001 Rmu_sc0006522.1_g000019 Rmu_sc0007102.1_g000005 Rmu_sc0007810.1_g000003 Rmu_sc0008339.1_g000025 Rmu_sc0008698.1_g000004 Rmu_sc0009313.1_g000006 Rmu_sc0009850.1_g000006 Rmu_sc0010598.1_g000003 Rmu_sc0011162.1_g000002 Rmu_sc0011824.1_g000004 Rmu_sc0011900.1_g000010 Rmu_sc0012291.1_g000006 Rmu_sc0012619.1_g000003 Rmu_sc0014679.1_g000001 Rmu_sc0019053.1_g000001 Rmu_sc0021462.1_g000003 Rmu_sc0024172.1_g000001 Rmu_sc0024173.1_g000001 Rmu_ssc0000052.1_g000016 Rmu_ssc0000392.1_g000010 Rmu_ssc0000421.1_g000062 Rmu_ssc0000479.1_g000006
rosa_roxburghii Rroxscaffold_153G00436600 Rroxscaffold_1G00008580 Rroxscaffold_1G00016770 Rroxscaffold_1G00029550 Rroxscaffold_1G00036450 Rroxscaffold_1G00040410 Rroxscaffold_1G00047110 Rroxscaffold_1G00060570 Rroxscaffold_2G00081500 Rroxscaffold_2G00081510 Rroxscaffold_2G00086080 Rroxscaffold_2G00099620 Rroxscaffold_2G00099630 Rroxscaffold_2G00099640 Rroxscaffold_2G00109170 Rroxscaffold_2G00127750 Rroxscaffold_2G00128590 Rroxscaffold_2G00130780 Rroxscaffold_2G00131040 Rroxscaffold_2G00143160 Rroxscaffold_3G00229280 Rroxscaffold_3G00229290 Rroxscaffold_3G00229970 Rroxscaffold_3G00242860 Rroxscaffold_3G00242890 Rroxscaffold_3G00242900 Rroxscaffold_3G00248200 Rroxscaffold_4G00284550 Rroxscaffold_4G00288780 Rroxscaffold_4G00298620 Rroxscaffold_4G00298630 Rroxscaffold_4G00312420 Rroxscaffold_4G00320310 Rroxscaffold_4G00322220 Rroxscaffold_4G00323600 Rroxscaffold_4G00331830 Rroxscaffold_4G00332010 Rroxscaffold_4G00332020 Rroxscaffold_5G00344470 Rroxscaffold_5G00345310 Rroxscaffold_5G00356120 Rroxscaffold_5G00368700 Rroxscaffold_5G00379820 Rroxscaffold_5G00382480 Rroxscaffold_6G00395080 Rroxscaffold_6G00405520 Rroxscaffold_6G00428210 Rroxscaffold_7G00193460
rosa_samantha Rh7CG413200 Rh7DG284900

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AarI CACCTGC 2 cut(s) 43, 61
Acc36I ACCTGC 3 cut(s) 43, 61, 92
AccII CGCG 1 cut(s) 124
AciI CCGC 2 cut(s) 49, 111
AdeI CACNNNGTG 1 cut(s) 325
AflIII ACRYGT 1 cut(s) 122
AhdI GACNNNNNGTC 1 cut(s) 123
AluBI AGCT 1 cut(s) 333
AluI AGCT 1 cut(s) 333
Alw21I GWGCWC 1 cut(s) 171
AoxI GGCC 1 cut(s) 187
ArsI GACNNNNNNTTYG 2 cut(s) 184, 216
AspLEI GCGC 1 cut(s) 101
AspS9I GGNCC 1 cut(s) 280
AsuHPI GGTGA 1 cut(s) 88
AvaII GGWCC 1 cut(s) 280
BbsI GAAGAC 1 cut(s) 9
Bbv12I GWGCWC 1 cut(s) 171
BccI CCATC 1 cut(s) 157
BfaI CTAG 4 cut(s) 42, 59, 183, 263
BfmI CTRYAG 1 cut(s) 9
BfuAI ACCTGC 3 cut(s) 43, 61, 92
BglII AGATCT 1 cut(s) 195
BisI GCNGC 1 cut(s) 50
BlsI GCNGC 1 cut(s) 51
Bme18I GGWCC 1 cut(s) 280
BmeRI GACNNNNNGTC 1 cut(s) 123
BmgT120I GGNCC 1 cut(s) 280
BmiI GGNNCC 1 cut(s) 281
BmsI GCATC 3 cut(s) 203, 249, 344
BpiI GAAGAC 1 cut(s) 9
BseGI GGATG 1 cut(s) 359
BsgI GTGCAG 1 cut(s) 89
Bsh1236I CGCG 1 cut(s) 124
BshFI GGCC 1 cut(s) 189
BsiHKAI GWGCWC 1 cut(s) 171
BslFI GGGAC 1 cut(s) 293
BsmFI GGGAC 1 cut(s) 293
BsnI GGCC 1 cut(s) 189
Bsp1286I GDGCHC 1 cut(s) 171
Bsp143I GATC 1 cut(s) 195
BspACI CCGC 2 cut(s) 49, 111
BspANI GGCC 1 cut(s) 189
BspFNI CGCG 1 cut(s) 124
BspHI TCATGA 1 cut(s) 139
BspLI GGNNCC 1 cut(s) 281
BspMI ACCTGC 3 cut(s) 43, 61, 92
BssMI GATC 1 cut(s) 195
BstC8I GCNNGC 1 cut(s) 97
BstF5I GGATG 1 cut(s) 359
BstFNI CGCG 1 cut(s) 124
BstHHI GCGC 1 cut(s) 101
BstKTI GATC 1 cut(s) 198
BstMBI GATC 1 cut(s) 195
BstMWI GCNNNNNNNGC 4 cut(s) 55, 259, 293, 302
BstSFI CTRYAG 1 cut(s) 9
BstUI CGCG 1 cut(s) 124
BstV2I GAAGAC 1 cut(s) 9
BstX2I RGATCY 1 cut(s) 195
BstYI RGATCY 1 cut(s) 195
BsuRI GGCC 1 cut(s) 189
BtsCI GGATG 1 cut(s) 359
BtsI GCAGTG 1 cut(s) 72
BtsIMutI CAGTG 2 cut(s) 72, 209
BveI ACCTGC 3 cut(s) 43, 61, 92
Cac8I GCNNGC 1 cut(s) 97
CciI TCATGA 1 cut(s) 139
CfoI GCGC 1 cut(s) 101
Cfr13I GGNCC 1 cut(s) 280
CseI GACGC 1 cut(s) 113
CviAII CATG 1 cut(s) 140
CviJI RGCY 3 cut(s) 189, 310, 333
CviKI_1 RGCY 3 cut(s) 189, 310, 333
DpnI GATC 1 cut(s) 197
DpnII GATC 1 cut(s) 195
DraIII CACNNNGTG 1 cut(s) 325
DriI GACNNNNNGTC 1 cut(s) 123
Eam1105I GACNNNNNGTC 1 cut(s) 123
EciI GGCGGA 1 cut(s) 126
Eco47I GGWCC 1 cut(s) 280
EcoO109I RGGNCCY 1 cut(s) 280
FaeI CATG 1 cut(s) 143
FaiI YATR 8 cut(s) 141, 173, 270, 272, 274, 393, 398, 406
FaqI GGGAC 1 cut(s) 293
FatI CATG 1 cut(s) 139
Fnu4HI GCNGC 1 cut(s) 50
FokI GGATG 1 cut(s) 366
Fsp4HI GCNGC 1 cut(s) 50
FspBI CTAG 4 cut(s) 42, 59, 183, 263
GlaI GCGC 1 cut(s) 100
GluI GCNGC 1 cut(s) 50
HaeIII GGCC 1 cut(s) 189
HgaI GACGC 1 cut(s) 113
HhaI GCGC 1 cut(s) 101
Hin1II CATG 1 cut(s) 143
Hin6I GCGC 1 cut(s) 99
HinP1I GCGC 1 cut(s) 99
HinfI GANTC 3 cut(s) 14, 129, 388
HphI GGTGA 1 cut(s) 88
Hpy188III TCNNGA 2 cut(s) 42, 140
Hpy99I CGWCG 1 cut(s) 129
HpyCH4V TGCA 1 cut(s) 70
HpyF10VI GCNNNNNNNGC 4 cut(s) 55, 259, 293, 302
Hsp92II CATG 1 cut(s) 143
HspAI GCGC 1 cut(s) 99
Kzo9I GATC 1 cut(s) 195
LmnI GCTCC 1 cut(s) 82
LpnPI CCDG 5 cut(s) 38, 56, 87, 138, 343
LweI GCATC 3 cut(s) 203, 249, 344
MaeI CTAG 4 cut(s) 42, 59, 183, 263
MaeIII GTNAC 6 cut(s) 35, 76, 178, 233, 325, 338
MalI GATC 1 cut(s) 197
MboI GATC 1 cut(s) 195
MboII GAAGA 1 cut(s) 9
MflI RGATCY 1 cut(s) 195
MhlI GDGCHC 1 cut(s) 171
MluCI AATT 1 cut(s) 297
MluI ACGCGT 1 cut(s) 122
MlyI GAGTC 1 cut(s) 23
MmeI TCCRAC 1 cut(s) 331
MnlI CCTC 3 cut(s) 85, 179, 293
MseI TTAA 1 cut(s) 300
MvnI CGCG 1 cut(s) 124
MwoI GCNNNNNNNGC 4 cut(s) 55, 259, 293, 302
NdeII GATC 1 cut(s) 195
NlaIII CATG 1 cut(s) 143
NlaIV GGNNCC 1 cut(s) 281
NmuCI GTSAC 3 cut(s) 76, 178, 325
PagI TCATGA 1 cut(s) 139
PaqCI CACCTGC 2 cut(s) 43, 61
PfeI GAWTC 2 cut(s) 129, 388
PkrI GCNGC 1 cut(s) 51
PleI GAGTC 1 cut(s) 22
PpsI GAGTC 1 cut(s) 22
PpuMI RGGWCCY 1 cut(s) 280
Psp5II RGGWCCY 1 cut(s) 280
PspN4I GGNNCC 1 cut(s) 281
PspPI GGNCC 1 cut(s) 280
PspPPI RGGWCCY 1 cut(s) 280
PsuI RGATCY 1 cut(s) 195
SaqAI TTAA 1 cut(s) 300
SatI GCNGC 1 cut(s) 50
Sau3AI GATC 1 cut(s) 195
Sau96I GGNCC 1 cut(s) 280
SchI GAGTC 1 cut(s) 23
SduI GDGCHC 1 cut(s) 171
SetI ASST 5 cut(s) 57, 75, 106, 285, 335
SfaNI GCATC 3 cut(s) 203, 249, 344
SfcI CTRYAG 1 cut(s) 9
SinI GGWCC 1 cut(s) 280
Sse9I AATT 1 cut(s) 297
SsiI CCGC 2 cut(s) 49, 111
SspMI CTAG 4 cut(s) 42, 59, 183, 263
TaqI TCGA 1 cut(s) 127
TasI AATT 1 cut(s) 297
TauI GCSGC 1 cut(s) 52
TfiI GAWTC 2 cut(s) 129, 388
Tru1I TTAA 1 cut(s) 300
Tru9I TTAA 1 cut(s) 300
TscAI CASTG 2 cut(s) 72, 209
TseFI GTSAC 3 cut(s) 76, 178, 325
Tsp45I GTSAC 3 cut(s) 76, 178, 325
TspDTI ATGAA 2 cut(s) 17, 380
TspGWI ACGGA 1 cut(s) 95
TspRI CASTG 2 cut(s) 72, 209
VpaK11BI GGWCC 1 cut(s) 280
XbaI TCTAGA 1 cut(s) 41
XspI CTAG 4 cut(s) 42, 59, 183, 263
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.