Rroxscaffold_2G00099630

Belongs to the tRNA nucleotidyltransferase poly(A) polymerase family

Basic Information

Type: gene
Biological Identity
rosa_roxburghii
GWHEROQ00000002
Physical Location & Seq
Reverse (-)
21388076 .. 21388492
417 bp
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UTR
Exon/CDS
Intron
Rroxscaffold_2G00099630.1

Sequence Viewer

Length: 357 bp
ATGAAGTTCTTCATATATTCTTCAAGGCCAAGCGGTGGCTTTGATATATGTGGAGGACACATCTACAACCCACGTTGCATGAATGGCCGAACAATTATTCTAGTGGCCAAGTTGTCCTTCGCAACTCCTCTTGATGTGGAGAATTCAGACCAACAAGTGGTTGTCTATAATGGCCAATCTGTGGCTAATCTCGAAGACACCATGTTCTATGACATGGTAGTTGGCGACAAAGACGATCTTGGAACATCTTCATCTCCAAAAGTGCAATTGAAGATCATGTTTCGCCAACCAACAAAGATACTTGGGGGCAAGATTACTCCTCCTACGAGCCAAATTTTTCCCAAGTTTTCGATGTGA

Protein Analysis

118

Amino Acids

13.08

Weight (kDa)

8.6

Isoelectric Point (pI)

44.11

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready

Orthologous Genes (Group: OG0000314)

Species Orthologous Gene IDs
fragaria_vesca FvH4_1g02272 FvH4_1g22661 FvH4_2g10242 FvH4_2g34051 FvH4_3g19221 FvH4_3g29651 FvH4_3g30891 FvH4_4g11061 FvH4_5g09250 FvH4_5g15302 FvH4_5g15303 FvH4_5g15304 FvH4_5g28521 FvH4_6g23591 FvH4_7g05710 FvH4_7g19520
pyrus_communis pycom07g06330
rosa_chinensis RchiOBHm_Chr5g0027301 RchiOBHm_Chr6g0251451 RchiOBHm_Chr6g0274861
rosa_laevigata RLG00000007850
rosa_multiflora Rmu_co8230721.1_g000001 Rmu_sc0000271.1_g000027 Rmu_sc0000303.1_g000024 Rmu_sc0000368.1_g000024 Rmu_sc0000621.1_g000037 Rmu_sc0000693.1_g000081 Rmu_sc0001229.1_g000006 Rmu_sc0001373.1_g000003 Rmu_sc0001459.1_g000001 Rmu_sc0001744.1_g000002 Rmu_sc0001909.1_g000002 Rmu_sc0002053.1_g000012 Rmu_sc0002060.1_g000015 Rmu_sc0002119.1_g000036 Rmu_sc0002177.1_g000007 Rmu_sc0002822.1_g000024 Rmu_sc0002965.1_g000015 Rmu_sc0003363.1_g000051 Rmu_sc0003500.1_g000013 Rmu_sc0004191.1_g000020 Rmu_sc0004904.1_g000032 Rmu_sc0005325.1_g000008 Rmu_sc0005947.1_g000040 Rmu_sc0006475.1_g000001 Rmu_sc0006522.1_g000019 Rmu_sc0007102.1_g000005 Rmu_sc0007810.1_g000003 Rmu_sc0008339.1_g000025 Rmu_sc0008698.1_g000004 Rmu_sc0009313.1_g000006 Rmu_sc0009850.1_g000006 Rmu_sc0010598.1_g000003 Rmu_sc0011162.1_g000002 Rmu_sc0011824.1_g000004 Rmu_sc0011900.1_g000010 Rmu_sc0012291.1_g000006 Rmu_sc0012619.1_g000003 Rmu_sc0014679.1_g000001 Rmu_sc0019053.1_g000001 Rmu_sc0021462.1_g000003 Rmu_sc0024172.1_g000001 Rmu_sc0024173.1_g000001 Rmu_ssc0000052.1_g000016 Rmu_ssc0000392.1_g000010 Rmu_ssc0000421.1_g000062 Rmu_ssc0000479.1_g000006
rosa_roxburghii Rroxscaffold_153G00436600 Rroxscaffold_1G00008580 Rroxscaffold_1G00016770 Rroxscaffold_1G00029550 Rroxscaffold_1G00036450 Rroxscaffold_1G00040410 Rroxscaffold_1G00047110 Rroxscaffold_1G00060570 Rroxscaffold_2G00081500 Rroxscaffold_2G00081510 Rroxscaffold_2G00086080 Rroxscaffold_2G00099620 Rroxscaffold_2G00099630 Rroxscaffold_2G00099640 Rroxscaffold_2G00109170 Rroxscaffold_2G00127750 Rroxscaffold_2G00128590 Rroxscaffold_2G00130780 Rroxscaffold_2G00131040 Rroxscaffold_2G00143160 Rroxscaffold_3G00229280 Rroxscaffold_3G00229290 Rroxscaffold_3G00229970 Rroxscaffold_3G00242860 Rroxscaffold_3G00242890 Rroxscaffold_3G00242900 Rroxscaffold_3G00248200 Rroxscaffold_4G00284550 Rroxscaffold_4G00288780 Rroxscaffold_4G00298620 Rroxscaffold_4G00298630 Rroxscaffold_4G00312420 Rroxscaffold_4G00320310 Rroxscaffold_4G00322220 Rroxscaffold_4G00323600 Rroxscaffold_4G00331830 Rroxscaffold_4G00332010 Rroxscaffold_4G00332020 Rroxscaffold_5G00344470 Rroxscaffold_5G00345310 Rroxscaffold_5G00356120 Rroxscaffold_5G00368700 Rroxscaffold_5G00379820 Rroxscaffold_5G00382480 Rroxscaffold_6G00395080 Rroxscaffold_6G00405520 Rroxscaffold_6G00428210 Rroxscaffold_7G00193460
rosa_samantha Rh7CG413200 Rh7DG284900

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB7I CCANNNNNTGG 3 cut(s) 35, 157, 181
AciI CCGC 1 cut(s) 33
AcoI YGGCCR 3 cut(s) 85, 105, 172
AcsI RAATTY 2 cut(s) 142, 333
AfiI CCNNNNNNNGG 3 cut(s) 35, 157, 181
AgsI TTSAA 2 cut(s) 24, 271
AjuI GAANNNNNNNTTGG 2 cut(s) 101, 133
AoxI GGCC 4 cut(s) 26, 85, 105, 172
ApoI RAATTY 2 cut(s) 142, 333
Asp700I GAANNNNTTC 2 cut(s) 8, 247
BalI TGGCCA 2 cut(s) 107, 174
BbsI GAAGAC 1 cut(s) 201
BfaI CTAG 1 cut(s) 101
BpiI GAAGAC 1 cut(s) 201
Bsc4I CCNNNNNNNGG 3 cut(s) 35, 157, 181
BseLI CCNNNNNNNGG 3 cut(s) 35, 157, 181
BseRI GAGGAG 2 cut(s) 117, 309
BshFI GGCC 4 cut(s) 28, 87, 107, 174
BslI CCNNNNNNNGG 3 cut(s) 35, 157, 181
BsnI GGCC 4 cut(s) 28, 87, 107, 174
Bsp143I GATC 2 cut(s) 235, 273
BspACI CCGC 1 cut(s) 33
BspANI GGCC 4 cut(s) 28, 87, 107, 174
BssMI GATC 2 cut(s) 235, 273
BstKTI GATC 2 cut(s) 238, 276
BstMBI GATC 2 cut(s) 235, 273
BstMWI GCNNNNNNNGC 1 cut(s) 84
BstV2I GAAGAC 1 cut(s) 201
BsuRI GGCC 4 cut(s) 28, 87, 107, 174
CviAII CATG 4 cut(s) 79, 202, 214, 277
CviJI RGCY 7 cut(s) 28, 39, 87, 107, 174, 185, 330
CviKI_1 RGCY 7 cut(s) 28, 39, 87, 107, 174, 185, 330
DpnI GATC 2 cut(s) 237, 275
DpnII GATC 2 cut(s) 235, 273
EaeI YGGCCR 3 cut(s) 85, 105, 172
EcoRI GAATTC 1 cut(s) 142
FaeI CATG 4 cut(s) 82, 205, 217, 280
FalI AAGNNNNNCTT 4 cut(s) 101, 133, 222, 254
FatI CATG 4 cut(s) 78, 201, 213, 276
FspBI CTAG 1 cut(s) 101
HaeIII GGCC 4 cut(s) 28, 87, 107, 174
Hin1II CATG 4 cut(s) 82, 205, 217, 280
Hpy188I TCNGA 1 cut(s) 148
Hpy188III TCNNGA 2 cut(s) 131, 191
HpyAV CCTTC 1 cut(s) 127
HpyCH4IV ACGT 1 cut(s) 73
HpyCH4V TGCA 2 cut(s) 78, 265
HpyF10VI GCNNNNNNNGC 1 cut(s) 84
HpySE526I ACGT 1 cut(s) 73
Hsp92II CATG 4 cut(s) 82, 205, 217, 280
Kzo9I GATC 2 cut(s) 235, 273
MaeI CTAG 1 cut(s) 101
MaeII ACGT 1 cut(s) 73
MalI GATC 2 cut(s) 237, 275
MboI GATC 2 cut(s) 235, 273
MboII GAAGA 4 cut(s) 12, 206, 240, 283
MfeI CAATTG 1 cut(s) 266
MlsI TGGCCA 2 cut(s) 107, 174
MluCI AATT 4 cut(s) 93, 142, 266, 333
MluNI TGGCCA 2 cut(s) 107, 174
MnlI CCTC 3 cut(s) 47, 138, 330
Mox20I TGGCCA 2 cut(s) 107, 174
MroXI GAANNNNTTC 2 cut(s) 8, 247
MscI TGGCCA 2 cut(s) 107, 174
Msp20I TGGCCA 2 cut(s) 107, 174
MunI CAATTG 1 cut(s) 266
MwoI GCNNNNNNNGC 1 cut(s) 84
NdeII GATC 2 cut(s) 235, 273
NlaIII CATG 4 cut(s) 82, 205, 217, 280
PdmI GAANNNNTTC 2 cut(s) 8, 247
PflMI CCANNNNNTGG 3 cut(s) 35, 157, 181
Sau3AI GATC 2 cut(s) 235, 273
SetI ASST 1 cut(s) 76
Sse9I AATT 4 cut(s) 93, 142, 266, 333
SsiI CCGC 1 cut(s) 33
SspMI CTAG 1 cut(s) 101
TaiI ACGT 1 cut(s) 76
TaqI TCGA 2 cut(s) 192, 350
TasI AATT 4 cut(s) 93, 142, 266, 333
TspDTI ATGAA 3 cut(s) 17, 95, 240
Van91I CCANNNNNTGG 3 cut(s) 35, 157, 181
XapI RAATTY 2 cut(s) 142, 333
XmnI GAANNNNTTC 2 cut(s) 8, 247
XspI CTAG 1 cut(s) 101
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.