Basic Information

Type: gene

Biological Identity

Species

rosa_roxburghii

Chromosome

GWHEROQ00000004

Orthogroup ID

OG0000314

Physical Location & Seq

Genomic Coordinates Reverse (-)

6133625 .. 6134487

Gene Structure 863 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rroxscaffold_4G00284550.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 795 bp

ATGGCCCACTTTACTATCATCAATTTAGCATTGGCCATGCTACTAGACGTCATGGTGAAGATTGATGATCAAAGCCATGACCAACTTAATTATCAATTAAGTTGTGGTCTTGGAAGGCCAACATGTGGCTTTATTAATCAATTCAACTTGAATTTCTTCATCGTTGTTTCAAGGCCAAGCGGTGGCTTTGATATACATGGAGGATACATCTGCAACCCACCTTGCAAGAATGGCCGAATAATTATTCTAGTGGCCGCTCTAAATCTCTTGCAGAAAGAATTTGCCAATGATGATACTAAACAGTCCATAGAGGAGTCTCAATATGATGCCGGAAAAAATAGAGGCAAACAAATATCTGATATGCCTATCTTTGAAGAAGAGATCAATTCACCATTCTTTGGTGACTGTAAGTATGATCTCAACATGGAGCCAATATATGGTGAATACGATGATAATTATAATTTAATTATTGGTTCCAAAAATCATATAGAGGAGTTCAAGTTCTTTGAGGCTCTTGATCGCGAGAATTTTAACCAACAAGTGGTTAAATATAATGGCCAATTCGTGGCTAATTCTGAAGACACCATGTTCTATGACATGGTAGTTGGCGACAAAGCTGATCTTGGGACATCTTCATCTCCAAAAGTGCAATTGAAGATCATGTTTCGCCAACCAACAAAGATACTTCGGGGCAATGTTACTCCTTCTATGAGCCAAATTTCTTCCAAGTTTTTGACGCGAAGTATCTTTGGTATTTTCCTACAAGCTCCGGCAAGAGGGATTTTCGTGCCATAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003676 GO:0003723 GO:0003824 GO:0004652 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005829 GO:0006139 GO:0006276 GO:0006378 GO:0006396 GO:0006397 GO:0006725 GO:0006807 GO:0008150 GO:0008152 GO:0009451 GO:0009987 GO:0010467 GO:0016070 GO:0016071 GO:0016740 GO:0016772 GO:0016779 GO:0031123 GO:0031124 GO:0034641 GO:0043170 GO:0043412 GO:0043631 GO:0044237 GO:0044238 GO:0044424 GO:0044444 GO:0044464 GO:0046483 GO:0070566 GO:0071704 GO:0090304 GO:0097159 GO:1901360 GO:1901363

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

PolyA_pol PolyA_pol_RNAbd

Protein Analysis

264

Amino Acids

29.85

Weight (kDa)

5.15

Isoelectric Point (pI)

48.43

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0000314)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_1g02272 FvH4_1g22661 FvH4_2g10242 FvH4_2g34051 FvH4_3g19221 FvH4_3g29651 FvH4_3g30891 FvH4_4g11061 FvH4_5g09250 FvH4_5g15302 FvH4_5g15303 FvH4_5g15304 FvH4_5g28521 FvH4_6g23591 FvH4_7g05710 FvH4_7g19520
pyrus_communis	pycom07g06330
rosa_chinensis	RchiOBHm_Chr5g0027301 RchiOBHm_Chr6g0251451 RchiOBHm_Chr6g0274861
rosa_laevigata	RLG00000007850
rosa_multiflora	Rmu_co8230721.1_g000001 Rmu_sc0000271.1_g000027 Rmu_sc0000303.1_g000024 Rmu_sc0000368.1_g000024 Rmu_sc0000621.1_g000037 Rmu_sc0000693.1_g000081 Rmu_sc0001229.1_g000006 Rmu_sc0001373.1_g000003 Rmu_sc0001459.1_g000001 Rmu_sc0001744.1_g000002 Rmu_sc0001909.1_g000002 Rmu_sc0002053.1_g000012 Rmu_sc0002060.1_g000015 Rmu_sc0002119.1_g000036 Rmu_sc0002177.1_g000007 Rmu_sc0002822.1_g000024 Rmu_sc0002965.1_g000015 Rmu_sc0003363.1_g000051 Rmu_sc0003500.1_g000013 Rmu_sc0004191.1_g000020 Rmu_sc0004904.1_g000032 Rmu_sc0005325.1_g000008 Rmu_sc0005947.1_g000040 Rmu_sc0006475.1_g000001 Rmu_sc0006522.1_g000019 Rmu_sc0007102.1_g000005 Rmu_sc0007810.1_g000003 Rmu_sc0008339.1_g000025 Rmu_sc0008698.1_g000004 Rmu_sc0009313.1_g000006 Rmu_sc0009850.1_g000006 Rmu_sc0010598.1_g000003 Rmu_sc0011162.1_g000002 Rmu_sc0011824.1_g000004 Rmu_sc0011900.1_g000010 Rmu_sc0012291.1_g000006 Rmu_sc0012619.1_g000003 Rmu_sc0014679.1_g000001 Rmu_sc0019053.1_g000001 Rmu_sc0021462.1_g000003 Rmu_sc0024172.1_g000001 Rmu_sc0024173.1_g000001 Rmu_ssc0000052.1_g000016 Rmu_ssc0000392.1_g000010 Rmu_ssc0000421.1_g000062 Rmu_ssc0000479.1_g000006
rosa_roxburghii	Rroxscaffold_153G00436600 Rroxscaffold_1G00008580 Rroxscaffold_1G00016770 Rroxscaffold_1G00029550 Rroxscaffold_1G00036450 Rroxscaffold_1G00040410 Rroxscaffold_1G00047110 Rroxscaffold_1G00060570 Rroxscaffold_2G00081500 Rroxscaffold_2G00081510 Rroxscaffold_2G00086080 Rroxscaffold_2G00099620 Rroxscaffold_2G00099630 Rroxscaffold_2G00099640 Rroxscaffold_2G00109170 Rroxscaffold_2G00127750 Rroxscaffold_2G00128590 Rroxscaffold_2G00130780 Rroxscaffold_2G00131040 Rroxscaffold_2G00143160 Rroxscaffold_3G00229280 Rroxscaffold_3G00229290 Rroxscaffold_3G00229970 Rroxscaffold_3G00242860 Rroxscaffold_3G00242890 Rroxscaffold_3G00242900 Rroxscaffold_3G00248200 Rroxscaffold_4G00284550 Rroxscaffold_4G00288780 Rroxscaffold_4G00298620 Rroxscaffold_4G00298630 Rroxscaffold_4G00312420 Rroxscaffold_4G00320310 Rroxscaffold_4G00322220 Rroxscaffold_4G00323600 Rroxscaffold_4G00331830 Rroxscaffold_4G00332010 Rroxscaffold_4G00332020 Rroxscaffold_5G00344470 Rroxscaffold_5G00345310 Rroxscaffold_5G00356120 Rroxscaffold_5G00368700 Rroxscaffold_5G00379820 Rroxscaffold_5G00382480 Rroxscaffold_6G00395080 Rroxscaffold_6G00405520 Rroxscaffold_6G00428210 Rroxscaffold_7G00193460
rosa_samantha	Rh7CG413200 Rh7DG284900

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	1 cut(s)	459
AatII	GACGTC	1 cut(s)	51
AccB7I	CCANNNNNTGG	6 cut(s)	125, 182, 398, 437, 541, 565
AccBSI	CCGCTC	1 cut(s)	257
AccII	CGCG	2 cut(s)	522, 739
AciI	CCGC	2 cut(s)	180, 255
AcoI	YGGCCR	4 cut(s)	33, 232, 252, 556
AcsI	RAATTY	4 cut(s)	151, 278, 526, 717
AcuI	CTGAAG	1 cut(s)	597
AcyI	GRCGYC	1 cut(s)	48
AfiI	CCNNNNNNNGG	7 cut(s)	125, 182, 398, 437, 541, 565, 776
AflIII	ACRYGT	1 cut(s)	122
AgsI	TTSAA	6 cut(s)	145, 151, 171, 374, 499, 655
AloI	GAACNNNNNNTCC	2 cut(s)	485, 517
AluBI	AGCT	2 cut(s)	617, 767
AluI	AGCT	2 cut(s)	617, 767
Alw26I	GTCTC	1 cut(s)	321
AoxI	GGCC	7 cut(s)	3, 33, 116, 173, 232, 252, 556
ApoI	RAATTY	4 cut(s)	151, 278, 526, 717
AseI	ATTAAT	1 cut(s)	135
Asp700I	GAANNNNTTC	1 cut(s)	155
AspS9I	GGNCC	1 cut(s)	4
AsuHPI	GGTGA	4 cut(s)	67, 381, 413, 452
BalI	TGGCCA	2 cut(s)	35, 558
BbsI	GAAGAC	1 cut(s)	585
BciVI	GTATCC	1 cut(s)	197
BclI	TGATCA	1 cut(s)	67
BcoDI	GTCTC	1 cut(s)	321
BfaI	CTAG	2 cut(s)	44, 248
BfuI	GTATCC	1 cut(s)	197
BisI	GCNGC	1 cut(s)	255
BlsI	GCNGC	1 cut(s)	256
BmgT120I	GGNCC	1 cut(s)	4
BmiI	GGNNCC	2 cut(s)	429, 475
BmsI	GCATC	1 cut(s)	316
BpiI	GAAGAC	1 cut(s)	585
BsaHI	GRCGYC	1 cut(s)	48
BsaXI	ACNNNNNCTCC	2 cut(s)	485, 515
Bsc4I	CCNNNNNNNGG	7 cut(s)	125, 182, 398, 437, 541, 565, 776
Bse3DI	GCAATG	1 cut(s)	700
BseLI	CCNNNNNNNGG	7 cut(s)	125, 182, 398, 437, 541, 565, 776
BseMI	GCAATG	1 cut(s)	700
BseRI	GAGGAG	2 cut(s)	326, 506
Bsh1236I	CGCG	2 cut(s)	522, 739
BshFI	GGCC	7 cut(s)	5, 35, 118, 175, 234, 254, 558
BsiSI	CCGG	2 cut(s)	330, 770
BslFI	GGGAC	1 cut(s)	640
BslI	CCNNNNNNNGG	7 cut(s)	125, 182, 398, 437, 541, 565, 776
BsmAI	GTCTC	1 cut(s)	321
BsmFI	GGGAC	1 cut(s)	640
BsnI	GGCC	7 cut(s)	5, 35, 118, 175, 234, 254, 558
Bsp143I	GATC	6 cut(s)	67, 381, 415, 517, 619, 657
Bsp68I	TCGCGA	1 cut(s)	522
BspACI	CCGC	2 cut(s)	180, 255
BspANI	GGCC	7 cut(s)	5, 35, 118, 175, 234, 254, 558
BspFNI	CGCG	2 cut(s)	522, 739
BspLI	GGNNCC	2 cut(s)	429, 475
BsrBI	CCGCTC	1 cut(s)	257
BsrDI	GCAATG	1 cut(s)	700
BssMI	GATC	6 cut(s)	67, 381, 415, 517, 619, 657
BssNI	GRCGYC	1 cut(s)	48
Bst4CI	ACNGT	2 cut(s)	303, 407
Bst6I	CTCTTC	1 cut(s)	372
BstACI	GRCGYC	1 cut(s)	48
BstFNI	CGCG	2 cut(s)	522, 739
BstKTI	GATC	6 cut(s)	70, 384, 418, 520, 622, 660
BstMAI	GTCTC	1 cut(s)	321
BstMBI	GATC	6 cut(s)	67, 381, 415, 517, 619, 657
BstMWI	GCNNNNNNNGC	1 cut(s)	231
BstNSI	RCATGY	1 cut(s)	126
BstUI	CGCG	2 cut(s)	522, 739
BstV2I	GAAGAC	1 cut(s)	585
BsuI	GTATCC	1 cut(s)	197
BsuRI	GGCC	7 cut(s)	5, 35, 118, 175, 234, 254, 558
BtuMI	TCGCGA	1 cut(s)	522
Cfr13I	GGNCC	1 cut(s)	4
CseI	GACGC	1 cut(s)	745
CviAII	CATG	9 cut(s)	37, 52, 77, 123, 197, 424, 586, 598, 661
DpnI	GATC	6 cut(s)	69, 383, 417, 519, 621, 659
DpnII	GATC	6 cut(s)	67, 381, 415, 517, 619, 657
EaeI	YGGCCR	4 cut(s)	33, 232, 252, 556
Eam1104I	CTCTTC	1 cut(s)	372
EarI	CTCTTC	1 cut(s)	372
Eco57I	CTGAAG	1 cut(s)	597
FaeI	CATG	9 cut(s)	40, 55, 80, 126, 200, 427, 589, 601, 664
FalI	AAGNNNNNCTT	2 cut(s)	606, 638
FaqI	GGGAC	1 cut(s)	640
FatI	CATG	9 cut(s)	36, 51, 76, 122, 196, 423, 585, 597, 660
FbaI	TGATCA	1 cut(s)	67
Fnu4HI	GCNGC	1 cut(s)	255
Fsp4HI	GCNGC	1 cut(s)	255
FspBI	CTAG	2 cut(s)	44, 248
GluI	GCNGC	1 cut(s)	255
HaeIII	GGCC	7 cut(s)	5, 35, 118, 175, 234, 254, 558
HapII	CCGG	2 cut(s)	330, 770
HgaI	GACGC	1 cut(s)	745
Hin1I	GRCGYC	1 cut(s)	48
Hin1II	CATG	9 cut(s)	40, 55, 80, 126, 200, 427, 589, 601, 664
HinfI	GANTC	1 cut(s)	314
HpaII	CCGG	2 cut(s)	330, 770
HphI	GGTGA	4 cut(s)	67, 381, 413, 452
Hpy188I	TCNGA	2 cut(s)	358, 577
Hpy188III	TCNNGA	2 cut(s)	515, 521
HpyAV	CCTTC	2 cut(s)	108, 714
HpyCH4III	ACNGT	2 cut(s)	303, 407
HpyCH4IV	ACGT	1 cut(s)	48
HpyCH4V	TGCA	4 cut(s)	213, 225, 271, 649
HpyF10VI	GCNNNNNNNGC	1 cut(s)	231
HpySE526I	ACGT	1 cut(s)	48
Hsp92I	GRCGYC	1 cut(s)	48
Hsp92II	CATG	9 cut(s)	40, 55, 80, 126, 200, 427, 589, 601, 664
Ksp22I	TGATCA	1 cut(s)	67
Kzo9I	GATC	6 cut(s)	67, 381, 415, 517, 619, 657
LmnI	GCTCC	2 cut(s)	427, 772
LpnPI	CCDG	2 cut(s)	343, 783
LweI	GCATC	1 cut(s)	316
MaeI	CTAG	2 cut(s)	44, 248
MaeII	ACGT	1 cut(s)	48
MaeIII	GTNAC	2 cut(s)	401, 697
MalI	GATC	6 cut(s)	69, 383, 417, 519, 621, 659
MbiI	CCGCTC	1 cut(s)	257
MboI	GATC	6 cut(s)	67, 381, 415, 517, 619, 657
MboII	GAAGA	8 cut(s)	70, 148, 386, 389, 590, 624, 667, 714
MfeI	CAATTG	1 cut(s)	650
MlsI	TGGCCA	2 cut(s)	35, 558
MluNI	TGGCCA	2 cut(s)	35, 558
MlyI	GAGTC	1 cut(s)	323
MnlI	CCTC	6 cut(s)	194, 304, 335, 484, 502, 770
Mox20I	TGGCCA	2 cut(s)	35, 558
MroXI	GAANNNNTTC	1 cut(s)	155
MscI	TGGCCA	2 cut(s)	35, 558
MseI	TTAA	6 cut(s)	87, 98, 135, 464, 531, 546
Msp20I	TGGCCA	2 cut(s)	35, 558
MspI	CCGG	2 cut(s)	330, 770
MunI	CAATTG	1 cut(s)	650
MvnI	CGCG	2 cut(s)	522, 739
MwoI	GCNNNNNNNGC	1 cut(s)	231
NdeII	GATC	6 cut(s)	67, 381, 415, 517, 619, 657
NlaIII	CATG	9 cut(s)	40, 55, 80, 126, 200, 427, 589, 601, 664
NlaIV	GGNNCC	2 cut(s)	429, 475
NmuCI	GTSAC	1 cut(s)	401
NruI	TCGCGA	1 cut(s)	522
NspI	RCATGY	1 cut(s)	126
PciI	ACATGT	1 cut(s)	122
PdmI	GAANNNNTTC	1 cut(s)	155
PflMI	CCANNNNNTGG	6 cut(s)	125, 182, 398, 437, 541, 565
PkrI	GCNGC	1 cut(s)	256
PleI	GAGTC	1 cut(s)	322
PpsI	GAGTC	1 cut(s)	322
PscI	ACATGT	1 cut(s)	122
PshBI	ATTAAT	1 cut(s)	135
PsiI	TTATAA	1 cut(s)	459
PspN4I	GGNNCC	2 cut(s)	429, 475
PspPI	GGNCC	1 cut(s)	4
RruI	TCGCGA	1 cut(s)	522
SaqAI	TTAA	6 cut(s)	87, 98, 135, 464, 531, 546
SatI	GCNGC	1 cut(s)	255
Sau3AI	GATC	6 cut(s)	67, 381, 415, 517, 619, 657
Sau96I	GGNCC	1 cut(s)	4
SchI	GAGTC	1 cut(s)	323
SetI	ASST	4 cut(s)	51, 223, 619, 769
SfaNI	GCATC	1 cut(s)	316
SsiI	CCGC	2 cut(s)	180, 255
SspMI	CTAG	2 cut(s)	44, 248
TaaI	ACNGT	2 cut(s)	303, 407
TaiI	ACGT	1 cut(s)	51
TauI	GCSGC	1 cut(s)	257
Tru1I	TTAA	6 cut(s)	87, 98, 135, 464, 531, 546
Tru9I	TTAA	6 cut(s)	87, 98, 135, 464, 531, 546
TseFI	GTSAC	1 cut(s)	401
Tsp45I	GTSAC	1 cut(s)	401
TspDTI	ATGAA	2 cut(s)	148, 624
Van91I	CCANNNNNTGG	6 cut(s)	125, 182, 398, 437, 541, 565
VspI	ATTAAT	1 cut(s)	135
XapI	RAATTY	4 cut(s)	151, 278, 526, 717
XceI	RCATGY	1 cut(s)	126
XmnI	GAANNNNTTC	1 cut(s)	155
XspI	CTAG	2 cut(s)	44, 248
ZraI	GACGTC	1 cut(s)	49

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.