Rmu_sc0004904.1_g000032

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_multiflora
Rmu_sc0004904.1
OG0000314
Physical Location & Seq
Reverse (-)
152074 .. 152577
504 bp
Loading structure...
UTR
Exon/CDS
Intron
Rmu_sc0004904.1_g000032.1.cds

Sequence Viewer

Length: 504 bp
atggccagtgttgccaccaattatgacgacattacaacagaagaggcttttgtttcgaagcctatcccggaaggagcgaccttcgaggagacactcgcgatccttatggagaatgtcgagaaccatcgcaagaagatggacgcggatcttgccagagaaactgcaaaatcagaaaggctccgccgcgagtttgagcagcgtatgactctatacgcggagagtaccaggcagcagattacacgaacagagggtgccttgaaggcgcaagctataaccatcgctaccgaacaggatgagcgtcataagacaattttgaacgctatcgcgagccaagacaagcatacctcatcggagttcgcgacctcgcgcaagaaagattccagcttgactactcaagtcggttcacagcaaggcgaattggaaagccaaaaatcttctcgcgaagaggttgtttctgaggttgaatttcctacagatgacaataagcctatatatagaggctaa
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

167

Amino Acids

18.86

Weight (kDa)

5.04

Isoelectric Point (pI)

54.29

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0000314)

Species Orthologous Gene IDs
fragaria_vesca FvH4_1g02272 FvH4_1g22661 FvH4_2g10242 FvH4_2g34051 FvH4_3g19221 FvH4_3g29651 FvH4_3g30891 FvH4_4g11061 FvH4_5g09250 FvH4_5g15302 FvH4_5g15303 FvH4_5g15304 FvH4_5g28521 FvH4_6g23591 FvH4_7g05710 FvH4_7g19520
pyrus_communis pycom07g06330
rosa_chinensis RchiOBHm_Chr5g0027301 RchiOBHm_Chr6g0251451 RchiOBHm_Chr6g0274861
rosa_laevigata RLG00000007850
rosa_multiflora Rmu_co8230721.1_g000001 Rmu_sc0000271.1_g000027 Rmu_sc0000303.1_g000024 Rmu_sc0000368.1_g000024 Rmu_sc0000621.1_g000037 Rmu_sc0000693.1_g000081 Rmu_sc0001229.1_g000006 Rmu_sc0001373.1_g000003 Rmu_sc0001459.1_g000001 Rmu_sc0001744.1_g000002 Rmu_sc0001909.1_g000002 Rmu_sc0002053.1_g000012 Rmu_sc0002060.1_g000015 Rmu_sc0002119.1_g000036 Rmu_sc0002177.1_g000007 Rmu_sc0002822.1_g000024 Rmu_sc0002965.1_g000015 Rmu_sc0003363.1_g000051 Rmu_sc0003500.1_g000013 Rmu_sc0004191.1_g000020 Rmu_sc0004904.1_g000032 Rmu_sc0005325.1_g000008 Rmu_sc0005947.1_g000040 Rmu_sc0006475.1_g000001 Rmu_sc0006522.1_g000019 Rmu_sc0007102.1_g000005 Rmu_sc0007810.1_g000003 Rmu_sc0008339.1_g000025 Rmu_sc0008698.1_g000004 Rmu_sc0009313.1_g000006 Rmu_sc0009850.1_g000006 Rmu_sc0010598.1_g000003 Rmu_sc0011162.1_g000002 Rmu_sc0011824.1_g000004 Rmu_sc0011900.1_g000010 Rmu_sc0012291.1_g000006 Rmu_sc0012619.1_g000003 Rmu_sc0014679.1_g000001 Rmu_sc0019053.1_g000001 Rmu_sc0021462.1_g000003 Rmu_sc0024172.1_g000001 Rmu_sc0024173.1_g000001 Rmu_ssc0000052.1_g000016 Rmu_ssc0000392.1_g000010 Rmu_ssc0000421.1_g000062 Rmu_ssc0000479.1_g000006
rosa_roxburghii Rroxscaffold_153G00436600 Rroxscaffold_1G00008580 Rroxscaffold_1G00016770 Rroxscaffold_1G00029550 Rroxscaffold_1G00036450 Rroxscaffold_1G00040410 Rroxscaffold_1G00047110 Rroxscaffold_1G00060570 Rroxscaffold_2G00081500 Rroxscaffold_2G00081510 Rroxscaffold_2G00086080 Rroxscaffold_2G00099620 Rroxscaffold_2G00099630 Rroxscaffold_2G00099640 Rroxscaffold_2G00109170 Rroxscaffold_2G00127750 Rroxscaffold_2G00128590 Rroxscaffold_2G00130780 Rroxscaffold_2G00131040 Rroxscaffold_2G00143160 Rroxscaffold_3G00229280 Rroxscaffold_3G00229290 Rroxscaffold_3G00229970 Rroxscaffold_3G00242860 Rroxscaffold_3G00242890 Rroxscaffold_3G00242900 Rroxscaffold_3G00248200 Rroxscaffold_4G00284550 Rroxscaffold_4G00288780 Rroxscaffold_4G00298620 Rroxscaffold_4G00298630 Rroxscaffold_4G00312420 Rroxscaffold_4G00320310 Rroxscaffold_4G00322220 Rroxscaffold_4G00323600 Rroxscaffold_4G00331830 Rroxscaffold_4G00332010 Rroxscaffold_4G00332020 Rroxscaffold_5G00344470 Rroxscaffold_5G00345310 Rroxscaffold_5G00356120 Rroxscaffold_5G00368700 Rroxscaffold_5G00379820 Rroxscaffold_5G00382480 Rroxscaffold_6G00395080 Rroxscaffold_6G00405520 Rroxscaffold_6G00428210 Rroxscaffold_7G00193460
rosa_samantha Rh7CG413200 Rh7DG284900

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB1I GGYRCC 1 cut(s) 251
AccII CGCG 8 cut(s) 98, 143, 186, 215, 326, 359, 367, 441
AciI CCGC 4 cut(s) 143, 181, 184, 215
AclWI GGATC 2 cut(s) 94, 153
AcoI YGGCCR 1 cut(s) 3
AcsI RAATTY 1 cut(s) 464
AfaI GTAC 1 cut(s) 223
AgsI TTSAA 3 cut(s) 259, 316, 464
AjnI CCWGG 1 cut(s) 224
AluBI AGCT 2 cut(s) 269, 384
AluI AGCT 2 cut(s) 269, 384
Alw26I GTCTC 1 cut(s) 83
AlwI GGATC 2 cut(s) 94, 153
AoxI GGCC 1 cut(s) 3
ApeKI GCWGC 2 cut(s) 196, 229
ApoI RAATTY 1 cut(s) 464
AspLEI GCGC 2 cut(s) 265, 369
AsuC2I CCSGG 1 cut(s) 68
AsuII TTCGAA 1 cut(s) 56
BalI TGGCCA 1 cut(s) 5
BanI GGYRCC 1 cut(s) 251
BbvI GCAGC 2 cut(s) 208, 241
BccI CCATC 3 cut(s) 130, 132, 284
BciT130I CCWGG 1 cut(s) 226
BcnI CCSGG 1 cut(s) 68
BcoDI GTCTC 1 cut(s) 83
BfmI CTRYAG 1 cut(s) 471
BglI GCCNNNNNGGC 1 cut(s) 260
BisI GCNGC 3 cut(s) 184, 197, 230
BlsI GCNGC 3 cut(s) 185, 198, 231
Bme1390I CCNGG 2 cut(s) 68, 226
BmiI GGNNCC 2 cut(s) 179, 253
BmrFI CCNGG 2 cut(s) 68, 226
Bpu14I TTCGAA 1 cut(s) 56
BpuEI CTTGAG 1 cut(s) 378
BpuMI CCSGG 1 cut(s) 68
Bse1I ACTGG 1 cut(s) 6
BseBI CCWGG 1 cut(s) 226
BseGI GGATG 1 cut(s) 298
BseMII CTCAG 1 cut(s) 447
BseNI ACTGG 1 cut(s) 6
BseRI GAGGAG 1 cut(s) 101
BseXI GCAGC 2 cut(s) 208, 241
Bsh1236I CGCG 8 cut(s) 98, 143, 186, 215, 326, 359, 367, 441
BshFI GGCC 1 cut(s) 5
BshNI GGYRCC 1 cut(s) 251
BsiSI CCGG 1 cut(s) 68
BsmAI GTCTC 1 cut(s) 83
BsnI GGCC 1 cut(s) 5
Bsp119I TTCGAA 1 cut(s) 56
Bsp143I GATC 2 cut(s) 99, 145
Bsp68I TCGCGA 4 cut(s) 98, 326, 359, 441
BspACI CCGC 4 cut(s) 143, 181, 184, 215
BspANI GGCC 1 cut(s) 5
BspCNI CTCAG 1 cut(s) 448
BspFNI CGCG 8 cut(s) 98, 143, 186, 215, 326, 359, 367, 441
BspLI GGNNCC 2 cut(s) 179, 253
BspPI GGATC 2 cut(s) 94, 153
BspT104I TTCGAA 1 cut(s) 56
BspT107I GGYRCC 1 cut(s) 251
BsrI ACTGG 1 cut(s) 6
BssMI GATC 2 cut(s) 99, 145
Bst2UI CCWGG 1 cut(s) 226
Bst6I CTCTTC 2 cut(s) 36, 438
BstBI TTCGAA 1 cut(s) 56
BstC8I GCNNGC 2 cut(s) 267, 328
BstDEI CTNAG 1 cut(s) 456
BstF5I GGATG 1 cut(s) 298
BstFNI CGCG 8 cut(s) 98, 143, 186, 215, 326, 359, 367, 441
BstHHI GCGC 2 cut(s) 265, 369
BstKTI GATC 2 cut(s) 102, 148
BstMAI GTCTC 1 cut(s) 83
BstMBI GATC 2 cut(s) 99, 145
BstMWI GCNNNNNNNGC 3 cut(s) 11, 149, 260
BstNI CCWGG 1 cut(s) 226
BstSCI CCNGG 2 cut(s) 66, 224
BstSFI CTRYAG 1 cut(s) 471
BstUI CGCG 8 cut(s) 98, 143, 186, 215, 326, 359, 367, 441
BstV1I GCAGC 2 cut(s) 208, 241
BstX2I RGATCY 1 cut(s) 145
BstYI RGATCY 1 cut(s) 145
BsuRI GGCC 1 cut(s) 5
BtgZI GCGATG 2 cut(s) 110, 262
BtsCI GGATG 1 cut(s) 298
BtsIMutI CAGTG 1 cut(s) 13
BtuMI TCGCGA 4 cut(s) 98, 326, 359, 441
Cac8I GCNNGC 2 cut(s) 267, 328
CfoI GCGC 2 cut(s) 265, 369
CseI GACGC 2 cut(s) 149, 287
Csp6I GTAC 1 cut(s) 222
CviQI GTAC 1 cut(s) 222
DdeI CTNAG 1 cut(s) 456
DpnI GATC 2 cut(s) 101, 147
DpnII GATC 2 cut(s) 99, 145
EaeI YGGCCR 1 cut(s) 3
Eam1104I CTCTTC 2 cut(s) 36, 438
EarI CTCTTC 2 cut(s) 36, 438
EciI GGCGGA 1 cut(s) 170
EcoRII CCWGG 1 cut(s) 224
Fnu4HI GCNGC 3 cut(s) 184, 197, 230
FokI GGATG 1 cut(s) 305
Fsp4HI GCNGC 3 cut(s) 184, 197, 230
GlaI GCGC 2 cut(s) 264, 368
GluI GCNGC 3 cut(s) 184, 197, 230
HaeIII GGCC 1 cut(s) 5
HapII CCGG 1 cut(s) 68
HgaI GACGC 2 cut(s) 149, 287
HhaI GCGC 2 cut(s) 265, 369
Hin6I GCGC 2 cut(s) 263, 367
HinP1I GCGC 2 cut(s) 263, 367
HinfI GANTC 2 cut(s) 205, 377
HpaII CCGG 1 cut(s) 68
Hpy166II GTNNAC 1 cut(s) 404
Hpy188I TCNGA 3 cut(s) 172, 352, 457
Hpy188III TCNNGA 5 cut(s) 97, 118, 325, 358, 440
Hpy8I GTNNAC 1 cut(s) 404
HpyAV CCTTC 3 cut(s) 65, 91, 253
HpyCH4V TGCA 1 cut(s) 164
HpyF10VI GCNNNNNNNGC 3 cut(s) 11, 149, 260
HpyF3I CTNAG 1 cut(s) 456
HspAI GCGC 2 cut(s) 263, 367
Kzo9I GATC 2 cut(s) 99, 145
LmnI GCTCC 2 cut(s) 74, 183
LpnPI CCDG 7 cut(s) 19, 81, 166, 211, 238, 275, 394
Lsp1109I GCAGC 2 cut(s) 208, 241
MalI GATC 2 cut(s) 101, 147
MboI GATC 2 cut(s) 99, 145
MboII GAAGA 4 cut(s) 53, 145, 426, 455
MflI RGATCY 1 cut(s) 145
MlsI TGGCCA 1 cut(s) 5
MluCI AATT 4 cut(s) 19, 309, 416, 464
MluNI TGGCCA 1 cut(s) 5
MlyI GAGTC 1 cut(s) 199
MnlI CCTC 8 cut(s) 37, 79, 241, 355, 373, 439, 451, 491
Mox20I TGGCCA 1 cut(s) 5
MscI TGGCCA 1 cut(s) 5
Msp20I TGGCCA 1 cut(s) 5
MspI CCGG 1 cut(s) 68
MspR9I CCNGG 2 cut(s) 68, 226
MvaI CCWGG 1 cut(s) 226
MvnI CGCG 8 cut(s) 98, 143, 186, 215, 326, 359, 367, 441
MwoI GCNNNNNNNGC 3 cut(s) 11, 149, 260
NciI CCSGG 1 cut(s) 68
NdeII GATC 2 cut(s) 99, 145
NlaIV GGNNCC 2 cut(s) 179, 253
NruI TCGCGA 4 cut(s) 98, 326, 359, 441
NspV TTCGAA 1 cut(s) 56
PcsI WCGNNNNNNNCGW 1 cut(s) 356
PfeI GAWTC 1 cut(s) 377
PfoI TCCNGGA 1 cut(s) 66
PkrI GCNGC 3 cut(s) 185, 198, 231
PleI GAGTC 1 cut(s) 199
PpsI GAGTC 1 cut(s) 199
Psp6I CCWGG 1 cut(s) 224
PspGI CCWGG 1 cut(s) 224
PspN4I GGNNCC 2 cut(s) 179, 253
PsuI RGATCY 1 cut(s) 145
RruI TCGCGA 4 cut(s) 98, 326, 359, 441
RsaI GTAC 1 cut(s) 223
RsaNI GTAC 1 cut(s) 222
SatI GCNGC 3 cut(s) 184, 197, 230
Sau3AI GATC 2 cut(s) 99, 145
SchI GAGTC 1 cut(s) 199
ScrFI CCNGG 2 cut(s) 68, 226
SetI ASST 7 cut(s) 83, 271, 347, 365, 386, 450, 462
SfcI CTRYAG 1 cut(s) 471
SfuI TTCGAA 1 cut(s) 56
SmlI CTYRAG 1 cut(s) 393
SmoI CTYRAG 1 cut(s) 393
Sse9I AATT 4 cut(s) 19, 309, 416, 464
SsiI CCGC 4 cut(s) 143, 181, 184, 215
StyD4I CCNGG 2 cut(s) 66, 224
TaqI TCGA 3 cut(s) 56, 84, 117
TasI AATT 4 cut(s) 19, 309, 416, 464
TauI GCSGC 1 cut(s) 186
TfiI GAWTC 1 cut(s) 377
TscAI CASTG 1 cut(s) 13
TseI GCWGC 2 cut(s) 196, 229
TspRI CASTG 1 cut(s) 13
XapI RAATTY 1 cut(s) 464
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.