Rmu_sc0019053.1_g000001

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_multiflora
Rmu_sc0019053.1
OG0000314
Physical Location & Seq
Reverse (-)
1 .. 2491
2491 bp
Loading structure...
UTR
Exon/CDS
Intron
Rmu_sc0019053.1_g000001.1.cds

Sequence Viewer

Length: 753 bp
cgcttgaagaagaagtcaggtcacgggactagcccaacgactacaccccgcggtgctggcacgcctgcgcaaccgctcacccaaaagagactgtttgttgccaccaattatgacgacattacaacagaagaggcttttgtttcgaagcctatcccggaaggagcgaccttcgaggagacactcgcgatccttatggagaatgtcgagaaccatcgcaagaagatggacgcggatcttgccagagaaactgcaaaatcagaaaggctccgccgcgagtttgagcagcgtatgactctatacgcggagagtaccaggcagcaggttacacgaacagagggtgccttgaaggcgcaagctataactatcgctgccgaacaggatgagcgtcataagacaattttgaacgccatcacgagccaaaacaagcatacctcatcggagttcgcgaccttgcgcaaggaagatcccagcttgactactcaagtcggttcacagcaaggcgaattggaaagccaaaaatcttcacgcgaagaggttgtttctgaggttgaattgcctacaggtggcaataaacctaaatgcctcattgatgagtcacggccttacatagaggctttgcatggagaagacggtcagcaagaatgttcttctgacgaagttgtctctgaacatgtactcgacttctccaatgatcaagccaaatatgtggctactgatcagatgcctggggggcaagacgtagctcacgttcag
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

251

Amino Acids

27.86

Weight (kDa)

5.22

Isoelectric Point (pI)

52.55

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0000314)

Species Orthologous Gene IDs
fragaria_vesca FvH4_1g02272 FvH4_1g22661 FvH4_2g10242 FvH4_2g34051 FvH4_3g19221 FvH4_3g29651 FvH4_3g30891 FvH4_4g11061 FvH4_5g09250 FvH4_5g15302 FvH4_5g15303 FvH4_5g15304 FvH4_5g28521 FvH4_6g23591 FvH4_7g05710 FvH4_7g19520
pyrus_communis pycom07g06330
rosa_chinensis RchiOBHm_Chr5g0027301 RchiOBHm_Chr6g0251451 RchiOBHm_Chr6g0274861
rosa_laevigata RLG00000007850
rosa_multiflora Rmu_co8230721.1_g000001 Rmu_sc0000271.1_g000027 Rmu_sc0000303.1_g000024 Rmu_sc0000368.1_g000024 Rmu_sc0000621.1_g000037 Rmu_sc0000693.1_g000081 Rmu_sc0001229.1_g000006 Rmu_sc0001373.1_g000003 Rmu_sc0001459.1_g000001 Rmu_sc0001744.1_g000002 Rmu_sc0001909.1_g000002 Rmu_sc0002053.1_g000012 Rmu_sc0002060.1_g000015 Rmu_sc0002119.1_g000036 Rmu_sc0002177.1_g000007 Rmu_sc0002822.1_g000024 Rmu_sc0002965.1_g000015 Rmu_sc0003363.1_g000051 Rmu_sc0003500.1_g000013 Rmu_sc0004191.1_g000020 Rmu_sc0004904.1_g000032 Rmu_sc0005325.1_g000008 Rmu_sc0005947.1_g000040 Rmu_sc0006475.1_g000001 Rmu_sc0006522.1_g000019 Rmu_sc0007102.1_g000005 Rmu_sc0007810.1_g000003 Rmu_sc0008339.1_g000025 Rmu_sc0008698.1_g000004 Rmu_sc0009313.1_g000006 Rmu_sc0009850.1_g000006 Rmu_sc0010598.1_g000003 Rmu_sc0011162.1_g000002 Rmu_sc0011824.1_g000004 Rmu_sc0011900.1_g000010 Rmu_sc0012291.1_g000006 Rmu_sc0012619.1_g000003 Rmu_sc0014679.1_g000001 Rmu_sc0019053.1_g000001 Rmu_sc0021462.1_g000003 Rmu_sc0024172.1_g000001 Rmu_sc0024173.1_g000001 Rmu_ssc0000052.1_g000016 Rmu_ssc0000392.1_g000010 Rmu_ssc0000421.1_g000062 Rmu_ssc0000479.1_g000006
rosa_roxburghii Rroxscaffold_153G00436600 Rroxscaffold_1G00008580 Rroxscaffold_1G00016770 Rroxscaffold_1G00029550 Rroxscaffold_1G00036450 Rroxscaffold_1G00040410 Rroxscaffold_1G00047110 Rroxscaffold_1G00060570 Rroxscaffold_2G00081500 Rroxscaffold_2G00081510 Rroxscaffold_2G00086080 Rroxscaffold_2G00099620 Rroxscaffold_2G00099630 Rroxscaffold_2G00099640 Rroxscaffold_2G00109170 Rroxscaffold_2G00127750 Rroxscaffold_2G00128590 Rroxscaffold_2G00130780 Rroxscaffold_2G00131040 Rroxscaffold_2G00143160 Rroxscaffold_3G00229280 Rroxscaffold_3G00229290 Rroxscaffold_3G00229970 Rroxscaffold_3G00242860 Rroxscaffold_3G00242890 Rroxscaffold_3G00242900 Rroxscaffold_3G00248200 Rroxscaffold_4G00284550 Rroxscaffold_4G00288780 Rroxscaffold_4G00298620 Rroxscaffold_4G00298630 Rroxscaffold_4G00312420 Rroxscaffold_4G00320310 Rroxscaffold_4G00322220 Rroxscaffold_4G00323600 Rroxscaffold_4G00331830 Rroxscaffold_4G00332010 Rroxscaffold_4G00332020 Rroxscaffold_5G00344470 Rroxscaffold_5G00345310 Rroxscaffold_5G00356120 Rroxscaffold_5G00368700 Rroxscaffold_5G00379820 Rroxscaffold_5G00382480 Rroxscaffold_6G00395080 Rroxscaffold_6G00405520 Rroxscaffold_6G00428210 Rroxscaffold_7G00193460
rosa_samantha Rh7CG413200 Rh7DG284900

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AasI GACNNNNNNGTC 1 cut(s) 659
Acc16I TGCGCA 2 cut(s) 69, 455
Acc36I ACCTGC 1 cut(s) 310
AccB1I GGYRCC 1 cut(s) 338
AccBSI CCGCTC 1 cut(s) 76
AccII CGCG 7 cut(s) 51, 185, 230, 273, 302, 446, 528
AciI CCGC 7 cut(s) 49, 51, 74, 230, 268, 271, 302
AclWI GGATC 3 cut(s) 181, 240, 458
AfaI GTAC 2 cut(s) 310, 675
AfiI CCNNNNNNNGG 1 cut(s) 563
AflIII ACRYGT 1 cut(s) 670
AgsI TTSAA 4 cut(s) 7, 346, 403, 551
AjnI CCWGG 2 cut(s) 311, 724
AluBI AGCT 3 cut(s) 356, 471, 743
AluI AGCT 3 cut(s) 356, 471, 743
Alw26I GTCTC 3 cut(s) 82, 170, 667
AlwI GGATC 3 cut(s) 181, 240, 458
AoxI GGCC 1 cut(s) 599
ApeKI GCWGC 3 cut(s) 283, 316, 368
AspLEI GCGC 3 cut(s) 70, 352, 456
AsuC2I CCSGG 1 cut(s) 155
AsuHPI GGTGA 1 cut(s) 70
AsuII TTCGAA 1 cut(s) 143
BanI GGYRCC 1 cut(s) 338
BauI CACGAG 1 cut(s) 412
BbsI GAAGAC 1 cut(s) 633
BbvI GCAGC 3 cut(s) 295, 328, 355
BccI CCATC 3 cut(s) 217, 219, 416
BceAI ACGGC 1 cut(s) 614
BciT130I CCWGG 2 cut(s) 313, 726
BclI TGATCA 2 cut(s) 691, 715
BcnI CCSGG 1 cut(s) 155
BcoDI GTCTC 3 cut(s) 82, 170, 667
BfaI CTAG 1 cut(s) 30
BfmI CTRYAG 1 cut(s) 558
BfuAI ACCTGC 1 cut(s) 310
BglI GCCNNNNNGGC 2 cut(s) 347, 730
BisI GCNGC 4 cut(s) 271, 284, 317, 369
BlsI GCNGC 4 cut(s) 272, 285, 318, 370
Bme1390I CCNGG 3 cut(s) 155, 313, 726
BmiI GGNNCC 2 cut(s) 266, 340
BmrFI CCNGG 3 cut(s) 155, 313, 726
BmsI GCATC 1 cut(s) 711
BpiI GAAGAC 1 cut(s) 633
Bpu14I TTCGAA 1 cut(s) 143
BpuEI CTTGAG 1 cut(s) 465
BpuMI CCSGG 1 cut(s) 155
BsaJI CCNNGG 2 cut(s) 49, 725
Bsc4I CCNNNNNNNGG 1 cut(s) 563
BseBI CCWGG 2 cut(s) 313, 726
BseDI CCNNGG 2 cut(s) 49, 725
BseGI GGATG 1 cut(s) 385
BseLI CCNNNNNNNGG 1 cut(s) 563
BseMII CTCAG 1 cut(s) 534
BseRI GAGGAG 1 cut(s) 188
BseXI GCAGC 3 cut(s) 295, 328, 355
BseYI CCCAGC 1 cut(s) 467
Bsh1236I CGCG 7 cut(s) 51, 185, 230, 273, 302, 446, 528
BshFI GGCC 1 cut(s) 601
BshNI GGYRCC 1 cut(s) 338
BsiSI CCGG 1 cut(s) 155
BslFI GGGAC 1 cut(s) 40
BslI CCNNNNNNNGG 1 cut(s) 563
BsmAI GTCTC 3 cut(s) 82, 170, 667
BsmFI GGGAC 1 cut(s) 40
BsnI GGCC 1 cut(s) 601
Bsp119I TTCGAA 1 cut(s) 143
Bsp143I GATC 5 cut(s) 186, 232, 463, 691, 715
Bsp68I TCGCGA 2 cut(s) 185, 446
BspACI CCGC 7 cut(s) 49, 51, 74, 230, 268, 271, 302
BspANI GGCC 1 cut(s) 601
BspCNI CTCAG 1 cut(s) 535
BspFNI CGCG 7 cut(s) 51, 185, 230, 273, 302, 446, 528
BspLI GGNNCC 2 cut(s) 266, 340
BspMI ACCTGC 1 cut(s) 310
BspPI GGATC 3 cut(s) 181, 240, 458
BspT104I TTCGAA 1 cut(s) 143
BspT107I GGYRCC 1 cut(s) 338
BsrBI CCGCTC 1 cut(s) 76
BssECI CCNNGG 2 cut(s) 49, 725
BssMI GATC 5 cut(s) 186, 232, 463, 691, 715
BssSI CACGAG 1 cut(s) 412
Bst2BI CACGAG 1 cut(s) 412
Bst2UI CCWGG 2 cut(s) 313, 726
Bst4CI ACNGT 2 cut(s) 93, 632
Bst6I CTCTTC 2 cut(s) 123, 525
BstBI TTCGAA 1 cut(s) 143
BstC8I GCNNGC 4 cut(s) 58, 62, 66, 354
BstDEI CTNAG 1 cut(s) 543
BstDSI CCRYGG 1 cut(s) 49
BstF5I GGATG 1 cut(s) 385
BstFNI CGCG 7 cut(s) 51, 185, 230, 273, 302, 446, 528
BstHHI GCGC 3 cut(s) 70, 352, 456
BstKTI GATC 5 cut(s) 189, 235, 466, 694, 718
BstMAI GTCTC 3 cut(s) 82, 170, 667
BstMBI GATC 5 cut(s) 186, 232, 463, 691, 715
BstMWI GCNNNNNNNGC 4 cut(s) 57, 236, 347, 730
BstNI CCWGG 2 cut(s) 313, 726
BstNSI RCATGY 1 cut(s) 674
BstSCI CCNGG 3 cut(s) 153, 311, 724
BstSFI CTRYAG 1 cut(s) 558
BstUI CGCG 7 cut(s) 51, 185, 230, 273, 302, 446, 528
BstV1I GCAGC 3 cut(s) 295, 328, 355
BstV2I GAAGAC 1 cut(s) 633
BstX2I RGATCY 2 cut(s) 232, 463
BstXI CCANNNNNNTGG 1 cut(s) 706
BstYI RGATCY 2 cut(s) 232, 463
BsuRI GGCC 1 cut(s) 601
BtgI CCRYGG 1 cut(s) 49
BtgZI GCGATG 1 cut(s) 197
BtsCI GGATG 1 cut(s) 385
BtuMI TCGCGA 2 cut(s) 185, 446
BveI ACCTGC 1 cut(s) 310
Cac8I GCNNGC 4 cut(s) 58, 62, 66, 354
CfoI GCGC 3 cut(s) 70, 352, 456
Cfr42I CCGCGG 1 cut(s) 52
CseI GACGC 2 cut(s) 236, 374
Csp6I GTAC 2 cut(s) 309, 674
CviAII CATG 2 cut(s) 620, 671
CviQI GTAC 2 cut(s) 309, 674
DdeI CTNAG 1 cut(s) 543
DpnI GATC 5 cut(s) 188, 234, 465, 693, 717
DpnII GATC 5 cut(s) 186, 232, 463, 691, 715
DrdI GACNNNNNNGTC 1 cut(s) 659
DseDI GACNNNNNNGTC 1 cut(s) 659
Eam1104I CTCTTC 2 cut(s) 123, 525
EarI CTCTTC 2 cut(s) 123, 525
EciI GGCGGA 1 cut(s) 257
EcoRII CCWGG 2 cut(s) 311, 724
FaeI CATG 2 cut(s) 623, 674
FaqI GGGAC 1 cut(s) 40
FatI CATG 2 cut(s) 619, 670
FauI CCCGC 1 cut(s) 56
FbaI TGATCA 2 cut(s) 691, 715
Fnu4HI GCNGC 4 cut(s) 271, 284, 317, 369
FokI GGATG 1 cut(s) 392
Fsp4HI GCNGC 4 cut(s) 271, 284, 317, 369
FspBI CTAG 1 cut(s) 30
FspI TGCGCA 2 cut(s) 69, 455
GlaI GCGC 3 cut(s) 69, 351, 455
GluI GCNGC 4 cut(s) 271, 284, 317, 369
GsaI CCCAGC 1 cut(s) 471
HaeIII GGCC 1 cut(s) 601
HapII CCGG 1 cut(s) 155
HgaI GACGC 2 cut(s) 236, 374
HhaI GCGC 3 cut(s) 70, 352, 456
Hin1II CATG 2 cut(s) 623, 674
Hin6I GCGC 3 cut(s) 68, 350, 454
HinP1I GCGC 3 cut(s) 68, 350, 454
HinfI GANTC 2 cut(s) 292, 593
HpaII CCGG 1 cut(s) 155
HphI GGTGA 1 cut(s) 70
Hpy166II GTNNAC 1 cut(s) 491
Hpy188I TCNGA 6 cut(s) 259, 439, 544, 652, 667, 720
Hpy188III TCNNGA 4 cut(s) 184, 205, 412, 445
Hpy8I GTNNAC 1 cut(s) 491
HpyAV CCTTC 3 cut(s) 152, 178, 340
HpyCH4III ACNGT 2 cut(s) 93, 632
HpyCH4IV ACGT 2 cut(s) 738, 747
HpyCH4V TGCA 2 cut(s) 251, 619
HpyF10VI GCNNNNNNNGC 4 cut(s) 57, 236, 347, 730
HpyF3I CTNAG 1 cut(s) 543
HpySE526I ACGT 2 cut(s) 738, 747
Hsp92II CATG 2 cut(s) 623, 674
HspAI GCGC 3 cut(s) 68, 350, 454
Ksp22I TGATCA 2 cut(s) 691, 715
KspI CCGCGG 1 cut(s) 52
Kzo9I GATC 5 cut(s) 186, 232, 463, 691, 715
LmnI GCTCC 2 cut(s) 161, 270
Lsp1109I GCAGC 3 cut(s) 295, 328, 355
LweI GCATC 1 cut(s) 711
MaeI CTAG 1 cut(s) 30
MaeII ACGT 2 cut(s) 738, 747
MaeIII GTNAC 3 cut(s) 20, 322, 594
MalI GATC 5 cut(s) 188, 234, 465, 693, 717
MbiI CCGCTC 1 cut(s) 76
MboI GATC 5 cut(s) 186, 232, 463, 691, 715
MboII GAAGA 9 cut(s) 19, 22, 140, 232, 473, 513, 542, 638, 639
MflI RGATCY 2 cut(s) 232, 463
MluCI AATT 4 cut(s) 106, 396, 503, 551
MlyI GAGTC 2 cut(s) 286, 602
MnlI CCTC 8 cut(s) 124, 166, 328, 442, 526, 538, 593, 604
MspA1I CMGCKG 1 cut(s) 51
MspI CCGG 1 cut(s) 155
MspR9I CCNGG 3 cut(s) 155, 313, 726
MvaI CCWGG 2 cut(s) 313, 726
MvnI CGCG 7 cut(s) 51, 185, 230, 273, 302, 446, 528
MwoI GCNNNNNNNGC 4 cut(s) 57, 236, 347, 730
NciI CCSGG 1 cut(s) 155
NdeII GATC 5 cut(s) 186, 232, 463, 691, 715
NlaIII CATG 2 cut(s) 623, 674
NlaIV GGNNCC 2 cut(s) 266, 340
NmuCI GTSAC 2 cut(s) 20, 594
NruI TCGCGA 2 cut(s) 185, 446
NsbI TGCGCA 2 cut(s) 69, 455
NspI RCATGY 1 cut(s) 674
NspV TTCGAA 1 cut(s) 143
PciI ACATGT 1 cut(s) 670
PcsI WCGNNNNNNNCGW 2 cut(s) 443, 744
PfoI TCCNGGA 1 cut(s) 153
PkrI GCNGC 4 cut(s) 272, 285, 318, 370
PleI GAGTC 2 cut(s) 286, 601
PpsI GAGTC 2 cut(s) 286, 601
PscI ACATGT 1 cut(s) 670
Psp6I CCWGG 2 cut(s) 311, 724
PspFI CCCAGC 1 cut(s) 467
PspGI CCWGG 2 cut(s) 311, 724
PspN4I GGNNCC 2 cut(s) 266, 340
PsrI GAACNNNNNNTAC 1 cut(s) 732
PsuI RGATCY 2 cut(s) 232, 463
RruI TCGCGA 2 cut(s) 185, 446
RsaI GTAC 2 cut(s) 310, 675
RsaNI GTAC 2 cut(s) 309, 674
SacII CCGCGG 1 cut(s) 52
SatI GCNGC 4 cut(s) 271, 284, 317, 369
Sau3AI GATC 5 cut(s) 186, 232, 463, 691, 715
SchI GAGTC 2 cut(s) 286, 602
ScrFI CCNGG 3 cut(s) 155, 313, 726
SfaNI GCATC 1 cut(s) 711
SfcI CTRYAG 1 cut(s) 558
Sfr303I CCGCGG 1 cut(s) 52
SfuI TTCGAA 1 cut(s) 143
SgrBI CCGCGG 1 cut(s) 52
SmlI CTYRAG 1 cut(s) 480
SmoI CTYRAG 1 cut(s) 480
Sse9I AATT 4 cut(s) 106, 396, 503, 551
SsiI CCGC 7 cut(s) 49, 51, 74, 230, 268, 271, 302
SspMI CTAG 1 cut(s) 30
StyD4I CCNGG 3 cut(s) 153, 311, 724
TaaI ACNGT 2 cut(s) 93, 632
TaiI ACGT 2 cut(s) 741, 750
TaqI TCGA 4 cut(s) 143, 171, 204, 678
TasI AATT 4 cut(s) 106, 396, 503, 551
TatI WGTACW 1 cut(s) 673
TauI GCSGC 1 cut(s) 273
TseFI GTSAC 2 cut(s) 20, 594
TseI GCWGC 3 cut(s) 283, 316, 368
Tsp45I GTSAC 2 cut(s) 20, 594
XceI RCATGY 1 cut(s) 674
XspI CTAG 1 cut(s) 30
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.