Basic Information

Type: gene

Biological Identity

Species

rosa_roxburghii

Chromosome

GWHEROQ00000004

Orthogroup ID

OG0000314

Physical Location & Seq

Genomic Coordinates Reverse (-)

18412781 .. 18414214

Gene Structure 1434 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Rroxscaffold_4G00298630.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 891 bp

ATGAACGAGAATGCTCGTAAAGATAAAGAGCAAAGGGAGCAACGTGCTCAAGAAGCCGAACAAGCACGATCGAGAGCTTACCCGGTGGAGGAAGCAGAAAGACCAAGAGTGGAGAAAACAATATTAGCATATCCCGGATTGTATAGCGACTCGCCGCAAGACCGCATCGGAGTTCGCGACCTTGCACAAGGAAGATTCCATCTTGGCTACTCAAGTCGGTTCACATCAAGACAAATTGGAAAGTCAAGAATCTGCAAGCAAAGAGGTTGTTTCGAGGTTGAATTGTCTACAAGTGGCGATAAACCTAAATGCCTCACGGTGAATTACGACCTTACACGTAGGTCGTGCATGGAGAAGACAGTCCACAAGAATGTTCTTCTCGCCAAGAAAATTTCCATAGAGGCGTCTCAATATGATGCCCGGAAAGAATATAGAGGCAAACAAATATTTGATATGCCTATTTTCGAAGAAGAGATCAATTCATCGAATTTTGGTGATGCTAAATTTGATCTCGATGTGGAGCCAATTTATGATAAATATGATGATAATTATAATTTGATTATTGGTTTCAAAAATCATATGAAGGAGTTCAAGTTCTTTGAAGCTCTTGATGTGGAGAATTCGGACGCAAGTGGTCAAATGCAAAAGCCAATTCGTGGCCTATTCGAAGACACCATGTTCTATGATATGGTAGTTGGTAACAAAGCCGATCTATACTCATCTTCATCTCTAAAATTCCAATTGAAGATCATGCTGTGCCAACCAACAAGGATACTTGGGGGCAAGATTACCCTCTCACGAGCCAAATTTCTCCAAATTCTTCAACGCGAAGTATCTTTGTTCTTTTCCAACAAGCTCTCACAGGAGGGATTTTTACCCTACAAATTTTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003676 GO:0003723 GO:0003824 GO:0004652 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005829 GO:0006139 GO:0006276 GO:0006378 GO:0006396 GO:0006397 GO:0006725 GO:0006807 GO:0008150 GO:0008152 GO:0009451 GO:0009987 GO:0010467 GO:0016070 GO:0016071 GO:0016740 GO:0016772 GO:0016779 GO:0031123 GO:0031124 GO:0034641 GO:0043170 GO:0043412 GO:0043631 GO:0044237 GO:0044238 GO:0044424 GO:0044444 GO:0044464 GO:0046483 GO:0070566 GO:0071704 GO:0090304 GO:0097159 GO:1901360 GO:1901363

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

PolyA_pol PolyA_pol_RNAbd

Protein Analysis

296

Amino Acids

34.36

Weight (kDa)

8.77

Isoelectric Point (pI)

49.2

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0000314)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_1g02272 FvH4_1g22661 FvH4_2g10242 FvH4_2g34051 FvH4_3g19221 FvH4_3g29651 FvH4_3g30891 FvH4_4g11061 FvH4_5g09250 FvH4_5g15302 FvH4_5g15303 FvH4_5g15304 FvH4_5g28521 FvH4_6g23591 FvH4_7g05710 FvH4_7g19520
pyrus_communis	pycom07g06330
rosa_chinensis	RchiOBHm_Chr5g0027301 RchiOBHm_Chr6g0251451 RchiOBHm_Chr6g0274861
rosa_laevigata	RLG00000007850
rosa_multiflora	Rmu_co8230721.1_g000001 Rmu_sc0000271.1_g000027 Rmu_sc0000303.1_g000024 Rmu_sc0000368.1_g000024 Rmu_sc0000621.1_g000037 Rmu_sc0000693.1_g000081 Rmu_sc0001229.1_g000006 Rmu_sc0001373.1_g000003 Rmu_sc0001459.1_g000001 Rmu_sc0001744.1_g000002 Rmu_sc0001909.1_g000002 Rmu_sc0002053.1_g000012 Rmu_sc0002060.1_g000015 Rmu_sc0002119.1_g000036 Rmu_sc0002177.1_g000007 Rmu_sc0002822.1_g000024 Rmu_sc0002965.1_g000015 Rmu_sc0003363.1_g000051 Rmu_sc0003500.1_g000013 Rmu_sc0004191.1_g000020 Rmu_sc0004904.1_g000032 Rmu_sc0005325.1_g000008 Rmu_sc0005947.1_g000040 Rmu_sc0006475.1_g000001 Rmu_sc0006522.1_g000019 Rmu_sc0007102.1_g000005 Rmu_sc0007810.1_g000003 Rmu_sc0008339.1_g000025 Rmu_sc0008698.1_g000004 Rmu_sc0009313.1_g000006 Rmu_sc0009850.1_g000006 Rmu_sc0010598.1_g000003 Rmu_sc0011162.1_g000002 Rmu_sc0011824.1_g000004 Rmu_sc0011900.1_g000010 Rmu_sc0012291.1_g000006 Rmu_sc0012619.1_g000003 Rmu_sc0014679.1_g000001 Rmu_sc0019053.1_g000001 Rmu_sc0021462.1_g000003 Rmu_sc0024172.1_g000001 Rmu_sc0024173.1_g000001 Rmu_ssc0000052.1_g000016 Rmu_ssc0000392.1_g000010 Rmu_ssc0000421.1_g000062 Rmu_ssc0000479.1_g000006
rosa_roxburghii	Rroxscaffold_153G00436600 Rroxscaffold_1G00008580 Rroxscaffold_1G00016770 Rroxscaffold_1G00029550 Rroxscaffold_1G00036450 Rroxscaffold_1G00040410 Rroxscaffold_1G00047110 Rroxscaffold_1G00060570 Rroxscaffold_2G00081500 Rroxscaffold_2G00081510 Rroxscaffold_2G00086080 Rroxscaffold_2G00099620 Rroxscaffold_2G00099630 Rroxscaffold_2G00099640 Rroxscaffold_2G00109170 Rroxscaffold_2G00127750 Rroxscaffold_2G00128590 Rroxscaffold_2G00130780 Rroxscaffold_2G00131040 Rroxscaffold_2G00143160 Rroxscaffold_3G00229280 Rroxscaffold_3G00229290 Rroxscaffold_3G00229970 Rroxscaffold_3G00242860 Rroxscaffold_3G00242890 Rroxscaffold_3G00242900 Rroxscaffold_3G00248200 Rroxscaffold_4G00284550 Rroxscaffold_4G00288780 Rroxscaffold_4G00298620 Rroxscaffold_4G00298630 Rroxscaffold_4G00312420 Rroxscaffold_4G00320310 Rroxscaffold_4G00322220 Rroxscaffold_4G00323600 Rroxscaffold_4G00331830 Rroxscaffold_4G00332010 Rroxscaffold_4G00332020 Rroxscaffold_5G00344470 Rroxscaffold_5G00345310 Rroxscaffold_5G00356120 Rroxscaffold_5G00368700 Rroxscaffold_5G00379820 Rroxscaffold_5G00382480 Rroxscaffold_6G00395080 Rroxscaffold_6G00405520 Rroxscaffold_6G00428210 Rroxscaffold_7G00193460
rosa_samantha	Rh7CG413200 Rh7DG284900

Restriction Enzyme Sites

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Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	1 cut(s)	552
AccB7I	CCANNNNNTGG	1 cut(s)	656
AccI	GTMKAC	1 cut(s)	287
AccII	CGCG	2 cut(s)	177, 828
AciI	CCGC	2 cut(s)	155, 163
AcsI	RAATTY	8 cut(s)	390, 487, 503, 619, 734, 806, 816, 884
AcyI	GRCGYC	1 cut(s)	404
AfiI	CCNNNNNNNGG	2 cut(s)	88, 656
AflIII	ACRYGT	1 cut(s)	335
AgsI	TTSAA	6 cut(s)	281, 571, 592, 602, 745, 824
AloI	GAACNNNNNNTCC	2 cut(s)	578, 610
AluBI	AGCT	3 cut(s)	77, 605, 856
AluI	AGCT	3 cut(s)	77, 605, 856
Alw21I	GWGCWC	1 cut(s)	49
Alw26I	GTCTC	1 cut(s)	411
AoxI	GGCC	1 cut(s)	658
ApoI	RAATTY	8 cut(s)	390, 487, 503, 619, 734, 806, 816, 884
Asp700I	GAANNNNTTC	1 cut(s)	587
AsuC2I	CCSGG	3 cut(s)	83, 135, 421
AsuHPI	GGTGA	2 cut(s)	331, 506
AsuII	TTCGAA	2 cut(s)	465, 666
BauI	CACGAG	1 cut(s)	798
BbsI	GAAGAC	2 cut(s)	362, 675
Bbv12I	GWGCWC	1 cut(s)	49
BccI	CCATC	1 cut(s)	207
BciVI	GTATCC	1 cut(s)	765
BcnI	CCSGG	3 cut(s)	83, 135, 421
BcoDI	GTCTC	1 cut(s)	411
BfuI	GTATCC	1 cut(s)	765
BisI	GCNGC	1 cut(s)	155
BlsI	GCNGC	1 cut(s)	156
Bme1390I	CCNGG	3 cut(s)	83, 135, 421
BmiI	GGNNCC	1 cut(s)	522
BmrFI	CCNGG	3 cut(s)	83, 135, 421
BmsI	GCATC	3 cut(s)	174, 406, 487
BpiI	GAAGAC	2 cut(s)	362, 675
Bpu14I	TTCGAA	2 cut(s)	465, 666
BpuEI	CTTGAG	2 cut(s)	33, 196
BpuMI	CCSGG	3 cut(s)	83, 135, 421
BsaAI	YACGTR	1 cut(s)	338
BsaHI	GRCGYC	1 cut(s)	404
BsaXI	ACNNNNNCTCC	2 cut(s)	578, 608
Bsc4I	CCNNNNNNNGG	2 cut(s)	88, 656
BseLI	CCNNNNNNNGG	2 cut(s)	88, 656
Bsh1236I	CGCG	2 cut(s)	177, 828
Bsh1285I	CGRYCG	1 cut(s)	71
BshFI	GGCC	1 cut(s)	660
BsiEI	CGRYCG	1 cut(s)	71
BsiHKAI	GWGCWC	1 cut(s)	49
BsiSI	CCGG	3 cut(s)	83, 135, 421
BslI	CCNNNNNNNGG	2 cut(s)	88, 656
BsmAI	GTCTC	1 cut(s)	411
BsmBI	CGTCTC	1 cut(s)	411
BsmI	GAATGC	1 cut(s)	16
BsnI	GGCC	1 cut(s)	660
Bsp119I	TTCGAA	2 cut(s)	465, 666
Bsp1286I	GDGCHC	1 cut(s)	49
Bsp143I	GATC	5 cut(s)	68, 474, 508, 709, 747
Bsp68I	TCGCGA	1 cut(s)	177
BspACI	CCGC	2 cut(s)	155, 163
BspANI	GGCC	1 cut(s)	660
BspFNI	CGCG	2 cut(s)	177, 828
BspLI	GGNNCC	1 cut(s)	522
BspT104I	TTCGAA	2 cut(s)	465, 666
BssMI	GATC	5 cut(s)	68, 474, 508, 709, 747
BssNI	GRCGYC	1 cut(s)	404
BssSI	CACGAG	1 cut(s)	798
Bst2BI	CACGAG	1 cut(s)	798
Bst4CI	ACNGT	2 cut(s)	319, 361
Bst6I	CTCTTC	1 cut(s)	465
BstACI	GRCGYC	1 cut(s)	404
BstBAI	YACGTR	1 cut(s)	338
BstBI	TTCGAA	2 cut(s)	465, 666
BstC8I	GCNNGC	1 cut(s)	257
BstFNI	CGCG	2 cut(s)	177, 828
BstKTI	GATC	5 cut(s)	71, 477, 511, 712, 750
BstMAI	GTCTC	1 cut(s)	411
BstMBI	GATC	5 cut(s)	68, 474, 508, 709, 747
BstMCI	CGRYCG	1 cut(s)	71
BstMWI	GCNNNNNNNGC	3 cut(s)	37, 53, 62
BstSCI	CCNGG	3 cut(s)	81, 133, 419
BstUI	CGCG	2 cut(s)	177, 828
BstV2I	GAAGAC	2 cut(s)	362, 675
BsuI	GTATCC	1 cut(s)	765
BsuRI	GGCC	1 cut(s)	660
BtuMI	TCGCGA	1 cut(s)	177
Cac8I	GCNNGC	1 cut(s)	257
CseI	GACGC	2 cut(s)	393, 635
CviAII	CATG	3 cut(s)	349, 676, 751
DpnI	GATC	5 cut(s)	70, 476, 510, 711, 749
DpnII	GATC	5 cut(s)	68, 474, 508, 709, 747
Eam1104I	CTCTTC	1 cut(s)	465
EarI	CTCTTC	1 cut(s)	465
EcoRI	GAATTC	1 cut(s)	619
Esp3I	CGTCTC	1 cut(s)	411
FaeI	CATG	3 cut(s)	352, 679, 754
FatI	CATG	3 cut(s)	348, 675, 750
FauNDI	CATATG	1 cut(s)	579
FblI	GTMKAC	1 cut(s)	287
Fnu4HI	GCNGC	1 cut(s)	155
Fsp4HI	GCNGC	1 cut(s)	155
GluI	GCNGC	1 cut(s)	155
HaeIII	GGCC	1 cut(s)	660
HapII	CCGG	3 cut(s)	83, 135, 421
HgaI	GACGC	2 cut(s)	393, 635
Hin1I	GRCGYC	1 cut(s)	404
Hin1II	CATG	3 cut(s)	352, 679, 754
HinfI	GANTC	3 cut(s)	149, 195, 249
HpaII	CCGG	3 cut(s)	83, 135, 421
HphI	GGTGA	2 cut(s)	331, 506
Hpy166II	GTNNAC	3 cut(s)	222, 288, 364
Hpy188I	TCNGA	2 cut(s)	170, 625
Hpy188III	TCNNGA	8 cut(s)	50, 72, 176, 228, 246, 512, 608, 798
Hpy8I	GTNNAC	3 cut(s)	222, 288, 364
HpyAV	CCTTC	1 cut(s)	577
HpyCH4III	ACNGT	2 cut(s)	319, 361
HpyCH4IV	ACGT	2 cut(s)	43, 337
HpyCH4V	TGCA	4 cut(s)	185, 255, 348, 643
HpyF10VI	GCNNNNNNNGC	3 cut(s)	37, 53, 62
HpySE526I	ACGT	2 cut(s)	43, 337
Hsp92I	GRCGYC	1 cut(s)	404
Hsp92II	CATG	3 cut(s)	352, 679, 754
Kzo9I	GATC	5 cut(s)	68, 474, 508, 709, 747
LmnI	GCTCC	2 cut(s)	37, 520
LpnPI	CCDG	4 cut(s)	96, 148, 434, 848
LweI	GCATC	3 cut(s)	174, 406, 487
MaeII	ACGT	2 cut(s)	43, 337
MaeIII	GTNAC	1 cut(s)	698
MalI	GATC	5 cut(s)	70, 476, 510, 711, 749
MboI	GATC	5 cut(s)	68, 474, 508, 709, 747
MboII	GAAGA	9 cut(s)	204, 367, 368, 479, 482, 680, 714, 757, 812
MfeI	CAATTG	1 cut(s)	740
MhlI	GDGCHC	1 cut(s)	49
MlyI	GAGTC	1 cut(s)	143
MmeI	TCCRAC	1 cut(s)	873
MnlI	CCTC	8 cut(s)	82, 257, 268, 323, 394, 428, 803, 859
MroXI	GAANNNNTTC	1 cut(s)	587
MslI	CAYNNNNRTG	1 cut(s)	369
MspI	CCGG	3 cut(s)	83, 135, 421
MspR9I	CCNGG	3 cut(s)	83, 135, 421
MunI	CAATTG	1 cut(s)	740
Mva1269I	GAATGC	1 cut(s)	16
MvnI	CGCG	2 cut(s)	177, 828
MwoI	GCNNNNNNNGC	3 cut(s)	37, 53, 62
NciI	CCSGG	3 cut(s)	83, 135, 421
NdeI	CATATG	1 cut(s)	579
NdeII	GATC	5 cut(s)	68, 474, 508, 709, 747
NlaIII	CATG	3 cut(s)	352, 679, 754
NlaIV	GGNNCC	1 cut(s)	522
NruI	TCGCGA	1 cut(s)	177
NspV	TTCGAA	2 cut(s)	465, 666
PcsI	WCGNNNNNNNCGW	1 cut(s)	174
PctI	GAATGC	1 cut(s)	16
PdmI	GAANNNNTTC	1 cut(s)	587
PfeI	GAWTC	2 cut(s)	195, 249
PflMI	CCANNNNNTGG	1 cut(s)	656
PfoI	TCCNGGA	1 cut(s)	133
PkrI	GCNGC	1 cut(s)	156
Ple19I	CGATCG	1 cut(s)	71
PleI	GAGTC	1 cut(s)	143
PpsI	GAGTC	1 cut(s)	143
Ppu21I	YACGTR	1 cut(s)	338
PsiI	TTATAA	1 cut(s)	552
PspN4I	GGNNCC	1 cut(s)	522
PvuI	CGATCG	1 cut(s)	71
RruI	TCGCGA	1 cut(s)	177
RseI	CAYNNNNRTG	1 cut(s)	369
SatI	GCNGC	1 cut(s)	155
Sau3AI	GATC	5 cut(s)	68, 474, 508, 709, 747
SchI	GAGTC	1 cut(s)	143
ScrFI	CCNGG	3 cut(s)	83, 135, 421
SduI	GDGCHC	1 cut(s)	49
SfaNI	GCATC	3 cut(s)	174, 406, 487
SfuI	TTCGAA	2 cut(s)	465, 666
SmiMI	CAYNNNNRTG	1 cut(s)	369
SmlI	CTYRAG	2 cut(s)	48, 211
SmoI	CTYRAG	2 cut(s)	48, 211
SsiI	CCGC	2 cut(s)	155, 163
SspI	AATATT	2 cut(s)	123, 447
StyD4I	CCNGG	3 cut(s)	81, 133, 419
TaaI	ACNGT	2 cut(s)	319, 361
TaiI	ACGT	2 cut(s)	46, 340
TaqI	TCGA	6 cut(s)	71, 273, 465, 485, 513, 666
TauI	GCSGC	1 cut(s)	157
TfiI	GAWTC	2 cut(s)	195, 249
TspDTI	ATGAA	4 cut(s)	17, 471, 596, 714
Van91I	CCANNNNNTGG	1 cut(s)	656
XapI	RAATTY	8 cut(s)	390, 487, 503, 619, 734, 806, 816, 884
XmiI	GTMKAC	1 cut(s)	287
XmnI	GAANNNNTTC	1 cut(s)	587

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.