Basic Information

Type: gene

Biological Identity

Species

rosa_roxburghii

Chromosome

GWHEROQ00000004

Orthogroup ID

OG0000314

Physical Location & Seq

Genomic Coordinates Reverse (-)

65985168 .. 65994504

Gene Structure 9337 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rroxscaffold_4G00332010.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 585 bp

ATGCCTATTTGTAAAGAAGGATTTGGTAACCCCAAGTTCACTCTTGACACGGAACCAATTTTCGACCAACAAGTGGTCATCTATAATAGCCAATCTGTGGCTAATTCTAGAAAGACCATGTTCTATGACATGGTAGTTGGCAACAAAGCCAATCTATGCTCATCTTCATCTCCAAAGGTACAACCGAAGGTCATGCTTTACCAATCAACAATGATACTTGGGGGGCAAGTTGACGTGTCCTACGAGCCGAGTTTTCAATGTCTCGATACAAAGCATCTTCATTATTTGCCTAAGAGTTCAATAAAGAAGGTGTTCCCTGCTAAAAATTTCAAAGCATCAAAACTTGGAGTGAAGCATAAATGGCCTCCTCCGTGGCCTTCTGCAGAGGCCAGAGGCAAAAGGTTGCCTGGCCTGCCTGGGAAGGAAGTGATTTCTCCACTTTCTTTTGGGAAGAGGCTTGAGTTATATAGCCCATTATATCTAAATCCAAGTATGGAAAGTCGAGTCAAGGGACGCCTCGACGACTACGGCCTCGATGTTGGCACGCTCGAGCATCAAAAGAGACAGCTTGCTAGCCCAAACTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003676 GO:0003723 GO:0003824 GO:0004652 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005829 GO:0006139 GO:0006276 GO:0006378 GO:0006396 GO:0006397 GO:0006725 GO:0006807 GO:0008150 GO:0008152 GO:0009451 GO:0009987 GO:0010467 GO:0016070 GO:0016071 GO:0016740 GO:0016772 GO:0016779 GO:0031123 GO:0031124 GO:0034641 GO:0043170 GO:0043412 GO:0043631 GO:0044237 GO:0044238 GO:0044424 GO:0044444 GO:0044464 GO:0046483 GO:0070566 GO:0071704 GO:0090304 GO:0097159 GO:1901360 GO:1901363

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

PolyA_pol PolyA_pol_RNAbd

Protein Analysis

194

Amino Acids

21.75

Weight (kDa)

9.57

Isoelectric Point (pI)

51.97

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0000314)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_1g02272 FvH4_1g22661 FvH4_2g10242 FvH4_2g34051 FvH4_3g19221 FvH4_3g29651 FvH4_3g30891 FvH4_4g11061 FvH4_5g09250 FvH4_5g15302 FvH4_5g15303 FvH4_5g15304 FvH4_5g28521 FvH4_6g23591 FvH4_7g05710 FvH4_7g19520
pyrus_communis	pycom07g06330
rosa_chinensis	RchiOBHm_Chr5g0027301 RchiOBHm_Chr6g0251451 RchiOBHm_Chr6g0274861
rosa_laevigata	RLG00000007850
rosa_multiflora	Rmu_co8230721.1_g000001 Rmu_sc0000271.1_g000027 Rmu_sc0000303.1_g000024 Rmu_sc0000368.1_g000024 Rmu_sc0000621.1_g000037 Rmu_sc0000693.1_g000081 Rmu_sc0001229.1_g000006 Rmu_sc0001373.1_g000003 Rmu_sc0001459.1_g000001 Rmu_sc0001744.1_g000002 Rmu_sc0001909.1_g000002 Rmu_sc0002053.1_g000012 Rmu_sc0002060.1_g000015 Rmu_sc0002119.1_g000036 Rmu_sc0002177.1_g000007 Rmu_sc0002822.1_g000024 Rmu_sc0002965.1_g000015 Rmu_sc0003363.1_g000051 Rmu_sc0003500.1_g000013 Rmu_sc0004191.1_g000020 Rmu_sc0004904.1_g000032 Rmu_sc0005325.1_g000008 Rmu_sc0005947.1_g000040 Rmu_sc0006475.1_g000001 Rmu_sc0006522.1_g000019 Rmu_sc0007102.1_g000005 Rmu_sc0007810.1_g000003 Rmu_sc0008339.1_g000025 Rmu_sc0008698.1_g000004 Rmu_sc0009313.1_g000006 Rmu_sc0009850.1_g000006 Rmu_sc0010598.1_g000003 Rmu_sc0011162.1_g000002 Rmu_sc0011824.1_g000004 Rmu_sc0011900.1_g000010 Rmu_sc0012291.1_g000006 Rmu_sc0012619.1_g000003 Rmu_sc0014679.1_g000001 Rmu_sc0019053.1_g000001 Rmu_sc0021462.1_g000003 Rmu_sc0024172.1_g000001 Rmu_sc0024173.1_g000001 Rmu_ssc0000052.1_g000016 Rmu_ssc0000392.1_g000010 Rmu_ssc0000421.1_g000062 Rmu_ssc0000479.1_g000006
rosa_roxburghii	Rroxscaffold_153G00436600 Rroxscaffold_1G00008580 Rroxscaffold_1G00016770 Rroxscaffold_1G00029550 Rroxscaffold_1G00036450 Rroxscaffold_1G00040410 Rroxscaffold_1G00047110 Rroxscaffold_1G00060570 Rroxscaffold_2G00081500 Rroxscaffold_2G00081510 Rroxscaffold_2G00086080 Rroxscaffold_2G00099620 Rroxscaffold_2G00099630 Rroxscaffold_2G00099640 Rroxscaffold_2G00109170 Rroxscaffold_2G00127750 Rroxscaffold_2G00128590 Rroxscaffold_2G00130780 Rroxscaffold_2G00131040 Rroxscaffold_2G00143160 Rroxscaffold_3G00229280 Rroxscaffold_3G00229290 Rroxscaffold_3G00229970 Rroxscaffold_3G00242860 Rroxscaffold_3G00242890 Rroxscaffold_3G00242900 Rroxscaffold_3G00248200 Rroxscaffold_4G00284550 Rroxscaffold_4G00288780 Rroxscaffold_4G00298620 Rroxscaffold_4G00298630 Rroxscaffold_4G00312420 Rroxscaffold_4G00320310 Rroxscaffold_4G00322220 Rroxscaffold_4G00323600 Rroxscaffold_4G00331830 Rroxscaffold_4G00332010 Rroxscaffold_4G00332020 Rroxscaffold_5G00344470 Rroxscaffold_5G00345310 Rroxscaffold_5G00356120 Rroxscaffold_5G00368700 Rroxscaffold_5G00379820 Rroxscaffold_5G00382480 Rroxscaffold_6G00395080 Rroxscaffold_6G00405520 Rroxscaffold_6G00428210 Rroxscaffold_7G00193460
rosa_samantha	Rh7CG413200 Rh7DG284900

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB7I	CCANNNNNTGG	2 cut(s)	73, 97
AcsI	RAATTY	1 cut(s)	325
AcyI	GRCGYC	1 cut(s)	514
AfaI	GTAC	1 cut(s)	180
AfiI	CCNNNNNNNGG	2 cut(s)	73, 97
AflIII	ACRYGT	1 cut(s)	234
AgsI	TTSAA	3 cut(s)	257, 300, 331
AjiI	CACGTC	1 cut(s)	235
AjnI	CCWGG	2 cut(s)	406, 415
AluBI	AGCT	1 cut(s)	568
AluI	AGCT	1 cut(s)	568
Alw26I	GTCTC	2 cut(s)	266, 556
Ama87I	CYCGRG	1 cut(s)	548
AoxI	GGCC	5 cut(s)	362, 374, 387, 409, 529
ApoI	RAATTY	1 cut(s)	325
Asp700I	GAANNNNTTC	1 cut(s)	311
AsuNHI	GCTAGC	1 cut(s)	572
AvaI	CYCGRG	1 cut(s)	548
BceAI	ACGGC	1 cut(s)	544
BcgI	CGANNNNNNTGC	2 cut(s)	175, 209
BciT130I	CCWGG	2 cut(s)	408, 417
BcoDI	GTCTC	2 cut(s)	266, 556
BfaI	CTAG	3 cut(s)	108, 573, 583
BfmI	CTRYAG	1 cut(s)	381
Bme1390I	CCNGG	2 cut(s)	408, 417
BmeT110I	CYCGRG	1 cut(s)	548
BmgBI	CACGTC	1 cut(s)	235
BmiI	GGNNCC	1 cut(s)	54
BmrFI	CCNGG	2 cut(s)	408, 417
BmsI	GCATC	3 cut(s)	283, 344, 562
BmtI	GCTAGC	1 cut(s)	576
BpuEI	CTTGAG	1 cut(s)	479
BsaHI	GRCGYC	1 cut(s)	514
BsaJI	CCNNGG	2 cut(s)	371, 416
Bsc4I	CCNNNNNNNGG	2 cut(s)	73, 97
BseBI	CCWGG	2 cut(s)	408, 417
BseDI	CCNNGG	2 cut(s)	371, 416
BseLI	CCNNNNNNNGG	2 cut(s)	73, 97
BseRI	GAGGAG	1 cut(s)	357
BshFI	GGCC	5 cut(s)	364, 376, 389, 411, 531
BsiHKCI	CYCGRG	1 cut(s)	548
BslFI	GGGAC	1 cut(s)	525
BslI	CCNNNNNNNGG	2 cut(s)	73, 97
BsmAI	GTCTC	2 cut(s)	266, 556
BsmFI	GGGAC	1 cut(s)	525
BsnI	GGCC	5 cut(s)	364, 376, 389, 411, 531
BsoBI	CYCGRG	1 cut(s)	548
BspANI	GGCC	5 cut(s)	364, 376, 389, 411, 531
BspLI	GGNNCC	1 cut(s)	54
BspMAI	CTGCAG	1 cut(s)	385
BspOI	GCTAGC	1 cut(s)	576
BssECI	CCNNGG	2 cut(s)	371, 416
BssNI	GRCGYC	1 cut(s)	514
Bst2UI	CCWGG	2 cut(s)	408, 417
Bst6I	CTCTTC	1 cut(s)	446
BstACI	GRCGYC	1 cut(s)	514
BstC8I	GCNNGC	4 cut(s)	413, 545, 570, 574
BstDEI	CTNAG	1 cut(s)	291
BstDSI	CCRYGG	1 cut(s)	371
BstEII	GGTNACC	1 cut(s)	26
BstMAI	GTCTC	2 cut(s)	266, 556
BstMWI	GCNNNNNNNGC	2 cut(s)	361, 412
BstNI	CCWGG	2 cut(s)	408, 417
BstPI	GGTNACC	1 cut(s)	26
BstSCI	CCNGG	2 cut(s)	406, 415
BstSFI	CTRYAG	1 cut(s)	381
BsuRI	GGCC	5 cut(s)	364, 376, 389, 411, 531
BtgI	CCRYGG	1 cut(s)	371
BtrI	CACGTC	1 cut(s)	235
Cac8I	GCNNGC	4 cut(s)	413, 545, 570, 574
CseI	GACGC	1 cut(s)	522
Csp6I	GTAC	1 cut(s)	179
CviAII	CATG	3 cut(s)	118, 130, 193
CviQI	GTAC	1 cut(s)	179
DdeI	CTNAG	1 cut(s)	291
Eam1104I	CTCTTC	1 cut(s)	446
EarI	CTCTTC	1 cut(s)	446
Eco88I	CYCGRG	1 cut(s)	548
Eco91I	GGTNACC	1 cut(s)	26
EcoO65I	GGTNACC	1 cut(s)	26
EcoRII	CCWGG	2 cut(s)	406, 415
FaeI	CATG	3 cut(s)	121, 133, 196
FaqI	GGGAC	1 cut(s)	525
FatI	CATG	3 cut(s)	117, 129, 192
FspBI	CTAG	3 cut(s)	108, 573, 583
HaeIII	GGCC	5 cut(s)	364, 376, 389, 411, 531
HgaI	GACGC	1 cut(s)	522
Hin1I	GRCGYC	1 cut(s)	514
Hin1II	CATG	3 cut(s)	121, 133, 196
HincII	GTYRAC	1 cut(s)	232
HindII	GTYRAC	1 cut(s)	232
HinfI	GANTC	1 cut(s)	504
Hpy166II	GTNNAC	2 cut(s)	39, 232
Hpy188III	TCNNGA	3 cut(s)	44, 108, 263
Hpy8I	GTNNAC	2 cut(s)	39, 232
Hpy99I	CGWCG	1 cut(s)	524
HpyAV	CCTTC	5 cut(s)	11, 181, 301, 387, 415
HpyCH4IV	ACGT	1 cut(s)	234
HpyCH4V	TGCA	1 cut(s)	383
HpyF10VI	GCNNNNNNNGC	2 cut(s)	361, 412
HpyF3I	CTNAG	1 cut(s)	291
HpySE526I	ACGT	1 cut(s)	234
Hsp92I	GRCGYC	1 cut(s)	514
Hsp92II	CATG	3 cut(s)	121, 133, 196
LpnPI	CCDG	7 cut(s)	330, 393, 402, 403, 420, 425, 429
LweI	GCATC	3 cut(s)	283, 344, 562
MaeI	CTAG	3 cut(s)	108, 573, 583
MaeII	ACGT	1 cut(s)	234
MaeIII	GTNAC	1 cut(s)	26
MboII	GAAGA	3 cut(s)	156, 269, 463
MluCI	AATT	3 cut(s)	57, 103, 325
MlyI	GAGTC	1 cut(s)	513
MnlI	CCTC	7 cut(s)	375, 378, 379, 386, 447, 527, 542
MroXI	GAANNNNTTC	1 cut(s)	311
MspR9I	CCNGG	2 cut(s)	408, 417
MvaI	CCWGG	2 cut(s)	408, 417
MwoI	GCNNNNNNNGC	2 cut(s)	361, 412
NheI	GCTAGC	1 cut(s)	572
NlaIII	CATG	3 cut(s)	121, 133, 196
NlaIV	GGNNCC	1 cut(s)	54
NmeAIII	GCCGAG	1 cut(s)	273
PaeR7I	CTCGAG	1 cut(s)	548
PcsI	WCGNNNNNNNCGW	1 cut(s)	240
PdmI	GAANNNNTTC	1 cut(s)	311
PflMI	CCANNNNNTGG	2 cut(s)	73, 97
PleI	GAGTC	1 cut(s)	512
PpsI	GAGTC	1 cut(s)	512
Psp6I	CCWGG	2 cut(s)	406, 415
PspEI	GGTNACC	1 cut(s)	26
PspGI	CCWGG	2 cut(s)	406, 415
PspN4I	GGNNCC	1 cut(s)	54
PspXI	VCTCGAGB	1 cut(s)	548
PstI	CTGCAG	1 cut(s)	385
RsaI	GTAC	1 cut(s)	180
RsaNI	GTAC	1 cut(s)	179
SchI	GAGTC	1 cut(s)	513
ScrFI	CCNGG	2 cut(s)	408, 417
SetI	ASST	6 cut(s)	180, 192, 237, 312, 404, 570
SfaNI	GCATC	3 cut(s)	283, 344, 562
SfcI	CTRYAG	1 cut(s)	381
Sfr274I	CTCGAG	1 cut(s)	548
SlaI	CTCGAG	1 cut(s)	548
SmlI	CTYRAG	2 cut(s)	458, 548
SmoI	CTYRAG	2 cut(s)	458, 548
Sse9I	AATT	3 cut(s)	57, 103, 325
SspMI	CTAG	3 cut(s)	108, 573, 583
StyD4I	CCNGG	2 cut(s)	406, 415
TaiI	ACGT	1 cut(s)	237
TaqI	TCGA	6 cut(s)	63, 264, 502, 519, 534, 549
TasI	AATT	3 cut(s)	57, 103, 325
TspDTI	ATGAA	2 cut(s)	156, 269
TspGWI	ACGGA	2 cut(s)	65, 360
Van91I	CCANNNNNTGG	2 cut(s)	73, 97
XapI	RAATTY	1 cut(s)	325
XbaI	TCTAGA	1 cut(s)	107
XhoI	CTCGAG	1 cut(s)	548
XmnI	GAANNNNTTC	1 cut(s)	311
XspI	CTAG	3 cut(s)	108, 573, 583

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.