Rroxscaffold_2G00086080

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_roxburghii
GWHEROQ00000002
OG0000314
Physical Location & Seq
Reverse (-)
8370738 .. 8371304
567 bp
Loading structure...
UTR
Exon/CDS
Intron
Rroxscaffold_2G00086080.1

Sequence Viewer

Length: 567 bp
ATGAGACTATCGCGATCCTTATGGAGAATGTCGAGAACCATCGCAAGAAGCCGGACGCGGATCTCGCCGAGAAACCGCAAAGTCGAAAGGCTCCTCCGCGAGTTTGAGCGGCGTATGACTCTCTATGCGGAAAATACCGGCAACAAAGTTACACGGACGAGAGGGCGCCTTGAAGGCGCAAGCTATAACTATCGCCGCCACACAAGACGAGCGTCATACGACAATTTTGAACGCTATAGCGGAACAAAACAAGCATACCTCATCGAGTTCGCGACCTTGTGCAAGGAAGGTCCCGGCTTGACTACTCAAGTCAATTCACGGCAAGGCGAATTGGAAAGCCAAAAATCTTCGCGCGAAGAGGTTGTTTCTAAGGTTGAATTGCCTACGGATGGCCATAAACCTAAATGCCTCATTGATGAGTCACGGCCTTACATAGAGGCTTTGCATGGAGAAGATGGTCAACAACATAATTGTTCCTCCGACAATATAATTGTTTCGAACAAATATATGATTTCTCCACCGATCAAGCCAAATACGTGGTCGTTAATCGATGCATGGGGGGCATGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

188

Amino Acids

21.83

Weight (kDa)

9.92

Isoelectric Point (pI)

58.84

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
Loading...
Style Settings
Image
Tree File
Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0000314)

Species Orthologous Gene IDs
fragaria_vesca FvH4_1g02272 FvH4_1g22661 FvH4_2g10242 FvH4_2g34051 FvH4_3g19221 FvH4_3g29651 FvH4_3g30891 FvH4_4g11061 FvH4_5g09250 FvH4_5g15302 FvH4_5g15303 FvH4_5g15304 FvH4_5g28521 FvH4_6g23591 FvH4_7g05710 FvH4_7g19520
pyrus_communis pycom07g06330
rosa_chinensis RchiOBHm_Chr5g0027301 RchiOBHm_Chr6g0251451 RchiOBHm_Chr6g0274861
rosa_laevigata RLG00000007850
rosa_multiflora Rmu_co8230721.1_g000001 Rmu_sc0000271.1_g000027 Rmu_sc0000303.1_g000024 Rmu_sc0000368.1_g000024 Rmu_sc0000621.1_g000037 Rmu_sc0000693.1_g000081 Rmu_sc0001229.1_g000006 Rmu_sc0001373.1_g000003 Rmu_sc0001459.1_g000001 Rmu_sc0001744.1_g000002 Rmu_sc0001909.1_g000002 Rmu_sc0002053.1_g000012 Rmu_sc0002060.1_g000015 Rmu_sc0002119.1_g000036 Rmu_sc0002177.1_g000007 Rmu_sc0002822.1_g000024 Rmu_sc0002965.1_g000015 Rmu_sc0003363.1_g000051 Rmu_sc0003500.1_g000013 Rmu_sc0004191.1_g000020 Rmu_sc0004904.1_g000032 Rmu_sc0005325.1_g000008 Rmu_sc0005947.1_g000040 Rmu_sc0006475.1_g000001 Rmu_sc0006522.1_g000019 Rmu_sc0007102.1_g000005 Rmu_sc0007810.1_g000003 Rmu_sc0008339.1_g000025 Rmu_sc0008698.1_g000004 Rmu_sc0009313.1_g000006 Rmu_sc0009850.1_g000006 Rmu_sc0010598.1_g000003 Rmu_sc0011162.1_g000002 Rmu_sc0011824.1_g000004 Rmu_sc0011900.1_g000010 Rmu_sc0012291.1_g000006 Rmu_sc0012619.1_g000003 Rmu_sc0014679.1_g000001 Rmu_sc0019053.1_g000001 Rmu_sc0021462.1_g000003 Rmu_sc0024172.1_g000001 Rmu_sc0024173.1_g000001 Rmu_ssc0000052.1_g000016 Rmu_ssc0000392.1_g000010 Rmu_ssc0000421.1_g000062 Rmu_ssc0000479.1_g000006
rosa_roxburghii Rroxscaffold_153G00436600 Rroxscaffold_1G00008580 Rroxscaffold_1G00016770 Rroxscaffold_1G00029550 Rroxscaffold_1G00036450 Rroxscaffold_1G00040410 Rroxscaffold_1G00047110 Rroxscaffold_1G00060570 Rroxscaffold_2G00081500 Rroxscaffold_2G00081510 Rroxscaffold_2G00086080 Rroxscaffold_2G00099620 Rroxscaffold_2G00099630 Rroxscaffold_2G00099640 Rroxscaffold_2G00109170 Rroxscaffold_2G00127750 Rroxscaffold_2G00128590 Rroxscaffold_2G00130780 Rroxscaffold_2G00131040 Rroxscaffold_2G00143160 Rroxscaffold_3G00229280 Rroxscaffold_3G00229290 Rroxscaffold_3G00229970 Rroxscaffold_3G00242860 Rroxscaffold_3G00242890 Rroxscaffold_3G00242900 Rroxscaffold_3G00248200 Rroxscaffold_4G00284550 Rroxscaffold_4G00288780 Rroxscaffold_4G00298620 Rroxscaffold_4G00298630 Rroxscaffold_4G00312420 Rroxscaffold_4G00320310 Rroxscaffold_4G00322220 Rroxscaffold_4G00323600 Rroxscaffold_4G00331830 Rroxscaffold_4G00332010 Rroxscaffold_4G00332020 Rroxscaffold_5G00344470 Rroxscaffold_5G00345310 Rroxscaffold_5G00356120 Rroxscaffold_5G00368700 Rroxscaffold_5G00379820 Rroxscaffold_5G00382480 Rroxscaffold_6G00395080 Rroxscaffold_6G00405520 Rroxscaffold_6G00428210 Rroxscaffold_7G00193460
rosa_samantha Rh7CG413200 Rh7DG284900

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB1I GGYRCC 1 cut(s) 165
AccBSI CCGCTC 1 cut(s) 109
AccII CGCG 6 cut(s) 13, 58, 99, 272, 352, 354
AciI CCGC 7 cut(s) 58, 76, 97, 109, 128, 196, 240
AclWI GGATC 2 cut(s) 9, 68
AcoI YGGCCR 1 cut(s) 391
AcyI GRCGYC 1 cut(s) 166
AfiI CCNNNNNNNGG 1 cut(s) 389
AgsI TTSAA 3 cut(s) 173, 230, 377
AluBI AGCT 1 cut(s) 183
AluI AGCT 1 cut(s) 183
AlwI GGATC 2 cut(s) 9, 68
AoxI GGCC 2 cut(s) 391, 425
ArsI GACNNNNNNTTYG 2 cut(s) 524, 556
AspLEI GCGC 3 cut(s) 168, 179, 354
AspS9I GGNCC 1 cut(s) 290
AsuC2I CCSGG 1 cut(s) 294
AsuII TTCGAA 1 cut(s) 497
AvaII GGWCC 1 cut(s) 290
BalI TGGCCA 1 cut(s) 393
BanI GGYRCC 1 cut(s) 165
BccI CCATC 3 cut(s) 47, 383, 449
BceAI ACGGC 2 cut(s) 335, 440
BcnI CCSGG 1 cut(s) 294
BfmI CTRYAG 1 cut(s) 235
BfoI RGCGCY 1 cut(s) 169
BglI GCCNNNNNGGC 1 cut(s) 174
BisI GCNGC 2 cut(s) 110, 196
BlsI GCNGC 2 cut(s) 111, 197
Bme1390I CCNGG 1 cut(s) 294
Bme18I GGWCC 1 cut(s) 290
BmgT120I GGNCC 1 cut(s) 290
BmiI GGNNCC 3 cut(s) 92, 167, 292
BmrFI CCNGG 1 cut(s) 294
BmsI GCATC 1 cut(s) 541
BoxI GACNNNNGTC 1 cut(s) 211
Bpu14I TTCGAA 1 cut(s) 497
BpuEI CTTGAG 1 cut(s) 291
BpuMI CCSGG 1 cut(s) 294
Bsa29I ATCGAT 1 cut(s) 549
BsaAI YACGTR 1 cut(s) 537
BsaHI GRCGYC 1 cut(s) 166
Bsc4I CCNNNNNNNGG 1 cut(s) 389
Bse118I RCCGGY 1 cut(s) 137
BseCI ATCGAT 1 cut(s) 549
BseGI GGATG 1 cut(s) 394
BseLI CCNNNNNNNGG 1 cut(s) 389
BseRI GAGGAG 1 cut(s) 83
Bsh1236I CGCG 6 cut(s) 13, 58, 99, 272, 352, 354
BshFI GGCC 2 cut(s) 393, 427
BshNI GGYRCC 1 cut(s) 165
BshVI ATCGAT 1 cut(s) 549
BsiSI CCGG 3 cut(s) 52, 138, 294
BslFI GGGAC 1 cut(s) 276
BslI CCNNNNNNNGG 1 cut(s) 389
BsmFI GGGAC 1 cut(s) 276
BsnI GGCC 2 cut(s) 393, 427
Bsp119I TTCGAA 1 cut(s) 497
Bsp143I GATC 3 cut(s) 14, 60, 522
Bsp68I TCGCGA 2 cut(s) 13, 272
BspACI CCGC 7 cut(s) 58, 76, 97, 109, 128, 196, 240
BspANI GGCC 2 cut(s) 393, 427
BspDI ATCGAT 1 cut(s) 549
BspFNI CGCG 6 cut(s) 13, 58, 99, 272, 352, 354
BspLI GGNNCC 3 cut(s) 92, 167, 292
BspPI GGATC 2 cut(s) 9, 68
BspT104I TTCGAA 1 cut(s) 497
BspT107I GGYRCC 1 cut(s) 165
BsrBI CCGCTC 1 cut(s) 109
BsrFI RCCGGY 1 cut(s) 137
BssAI RCCGGY 1 cut(s) 137
BssMI GATC 3 cut(s) 14, 60, 522
BssNI GRCGYC 1 cut(s) 166
Bst6I CTCTTC 1 cut(s) 351
BstACI GRCGYC 1 cut(s) 166
BstBAI YACGTR 1 cut(s) 537
BstBI TTCGAA 1 cut(s) 497
BstC8I GCNNGC 1 cut(s) 181
BstDEI CTNAG 1 cut(s) 369
BstF5I GGATG 1 cut(s) 394
BstFNI CGCG 6 cut(s) 13, 58, 99, 272, 352, 354
BstH2I RGCGCY 1 cut(s) 169
BstHHI GCGC 3 cut(s) 168, 179, 354
BstKTI GATC 3 cut(s) 17, 63, 525
BstMBI GATC 3 cut(s) 14, 60, 522
BstMWI GCNNNNNNNGC 3 cut(s) 64, 174, 560
BstPAI GACNNNNGTC 1 cut(s) 211
BstSCI CCNGG 1 cut(s) 292
BstSFI CTRYAG 1 cut(s) 235
BstUI CGCG 6 cut(s) 13, 58, 99, 272, 352, 354
BstX2I RGATCY 1 cut(s) 60
BstXI CCANNNNNNTGG 1 cut(s) 537
BstYI RGATCY 1 cut(s) 60
Bsu15I ATCGAT 1 cut(s) 549
BsuRI GGCC 2 cut(s) 393, 427
BsuTUI ATCGAT 1 cut(s) 549
BtgZI GCGATG 1 cut(s) 25
BtsCI GGATG 1 cut(s) 394
BtuMI TCGCGA 2 cut(s) 13, 272
Cac8I GCNNGC 1 cut(s) 181
CfoI GCGC 3 cut(s) 168, 179, 354
Cfr10I RCCGGY 1 cut(s) 137
Cfr13I GGNCC 1 cut(s) 290
ClaI ATCGAT 1 cut(s) 549
CseI GACGC 2 cut(s) 64, 201
CviAII CATG 3 cut(s) 446, 555, 564
CviJI RGCY 9 cut(s) 51, 91, 183, 297, 339, 393, 427, 440, 529
CviKI_1 RGCY 9 cut(s) 51, 91, 183, 297, 339, 393, 427, 440, 529
DdeI CTNAG 1 cut(s) 369
DinI GGCGCC 1 cut(s) 167
DpnI GATC 3 cut(s) 16, 62, 524
DpnII GATC 3 cut(s) 14, 60, 522
EaeI YGGCCR 1 cut(s) 391
Eam1104I CTCTTC 1 cut(s) 351
EarI CTCTTC 1 cut(s) 351
Eco47I GGWCC 1 cut(s) 290
EcoO109I RGGNCCY 1 cut(s) 290
EcoT22I ATGCAT 1 cut(s) 556
EgeI GGCGCC 1 cut(s) 167
EheI GGCGCC 1 cut(s) 167
FaeI CATG 3 cut(s) 449, 558, 567
FaqI GGGAC 1 cut(s) 276
FatI CATG 3 cut(s) 445, 554, 563
Fnu4HI GCNGC 2 cut(s) 110, 196
FokI GGATG 1 cut(s) 401
Fsp4HI GCNGC 2 cut(s) 110, 196
GlaI GCGC 3 cut(s) 167, 178, 353
GluI GCNGC 2 cut(s) 110, 196
HaeII RGCGCY 1 cut(s) 169
HaeIII GGCC 2 cut(s) 393, 427
HapII CCGG 3 cut(s) 52, 138, 294
HgaI GACGC 2 cut(s) 64, 201
HhaI GCGC 3 cut(s) 168, 179, 354
Hin1I GRCGYC 1 cut(s) 166
Hin1II CATG 3 cut(s) 449, 558, 567
Hin6I GCGC 3 cut(s) 166, 177, 352
HinP1I GCGC 3 cut(s) 166, 177, 352
HincII GTYRAC 1 cut(s) 461
HindII GTYRAC 1 cut(s) 461
HinfI GANTC 2 cut(s) 118, 419
HpaII CCGG 3 cut(s) 52, 138, 294
Hpy166II GTNNAC 1 cut(s) 461
Hpy188I TCNGA 1 cut(s) 481
Hpy188III TCNNGA 3 cut(s) 12, 33, 271
Hpy8I GTNNAC 1 cut(s) 461
HpyAV CCTTC 2 cut(s) 167, 281
HpyCH4IV ACGT 1 cut(s) 536
HpyCH4V TGCA 3 cut(s) 282, 445, 554
HpyF10VI GCNNNNNNNGC 3 cut(s) 64, 174, 560
HpyF3I CTNAG 1 cut(s) 369
HpySE526I ACGT 1 cut(s) 536
Hsp92I GRCGYC 1 cut(s) 166
Hsp92II CATG 3 cut(s) 449, 558, 567
HspAI GCGC 3 cut(s) 166, 177, 352
KasI GGCGCC 1 cut(s) 165
Kzo9I GATC 3 cut(s) 14, 60, 522
LmnI GCTCC 1 cut(s) 96
LpnPI CCDG 3 cut(s) 65, 151, 307
LweI GCATC 1 cut(s) 541
MaeII ACGT 1 cut(s) 536
MaeIII GTNAC 2 cut(s) 148, 420
MalI GATC 3 cut(s) 16, 62, 524
MbiI CCGCTC 1 cut(s) 109
MboI GATC 3 cut(s) 14, 60, 522
MboII GAAGA 3 cut(s) 339, 368, 464
MflI RGATCY 1 cut(s) 60
MlsI TGGCCA 1 cut(s) 393
MluCI AATT 6 cut(s) 223, 313, 329, 377, 469, 489
MluNI TGGCCA 1 cut(s) 393
Mly113I GGCGCC 1 cut(s) 166
MlyI GAGTC 2 cut(s) 112, 428
MmeI TCCRAC 1 cut(s) 504
MnlI CCTC 7 cut(s) 104, 155, 269, 352, 419, 430, 487
Mox20I TGGCCA 1 cut(s) 393
Mph1103I ATGCAT 1 cut(s) 556
MscI TGGCCA 1 cut(s) 393
MseI TTAA 1 cut(s) 545
Msp20I TGGCCA 1 cut(s) 393
MspI CCGG 3 cut(s) 52, 138, 294
MspR9I CCNGG 1 cut(s) 294
MvnI CGCG 6 cut(s) 13, 58, 99, 272, 352, 354
MwoI GCNNNNNNNGC 3 cut(s) 64, 174, 560
NarI GGCGCC 1 cut(s) 166
NciI CCSGG 1 cut(s) 294
NdeII GATC 3 cut(s) 14, 60, 522
NlaIII CATG 3 cut(s) 449, 558, 567
NlaIV GGNNCC 3 cut(s) 92, 167, 292
NmeAIII GCCGAG 1 cut(s) 93
NmuCI GTSAC 1 cut(s) 420
NruI TCGCGA 2 cut(s) 13, 272
NsiI ATGCAT 1 cut(s) 556
NspV TTCGAA 1 cut(s) 497
PkrI GCNGC 2 cut(s) 111, 197
PleI GAGTC 2 cut(s) 112, 427
PluTI GGCGCC 1 cut(s) 169
PpsI GAGTC 2 cut(s) 112, 427
Ppu21I YACGTR 1 cut(s) 537
PpuMI RGGWCCY 1 cut(s) 290
PshAI GACNNNNGTC 1 cut(s) 211
Psp5II RGGWCCY 1 cut(s) 290
PspN4I GGNNCC 3 cut(s) 92, 167, 292
PspPI GGNCC 1 cut(s) 290
PspPPI RGGWCCY 1 cut(s) 290
PsuI RGATCY 1 cut(s) 60
RruI TCGCGA 2 cut(s) 13, 272
SaqAI TTAA 1 cut(s) 545
SatI GCNGC 2 cut(s) 110, 196
Sau3AI GATC 3 cut(s) 14, 60, 522
Sau96I GGNCC 1 cut(s) 290
SchI GAGTC 2 cut(s) 112, 428
ScrFI CCNGG 1 cut(s) 294
SetI ASST 8 cut(s) 185, 261, 278, 292, 363, 375, 403, 539
SfaNI GCATC 1 cut(s) 541
SfcI CTRYAG 1 cut(s) 235
SfoI GGCGCC 1 cut(s) 167
SfuI TTCGAA 1 cut(s) 497
SinI GGWCC 1 cut(s) 290
SmlI CTYRAG 1 cut(s) 306
SmoI CTYRAG 1 cut(s) 306
Sse9I AATT 6 cut(s) 223, 313, 329, 377, 469, 489
SsiI CCGC 7 cut(s) 58, 76, 97, 109, 128, 196, 240
SspDI GGCGCC 1 cut(s) 165
StyD4I CCNGG 1 cut(s) 292
TaiI ACGT 1 cut(s) 539
TaqI TCGA 5 cut(s) 32, 84, 264, 497, 549
TasI AATT 6 cut(s) 223, 313, 329, 377, 469, 489
TauI GCSGC 2 cut(s) 112, 198
Tru1I TTAA 1 cut(s) 545
Tru9I TTAA 1 cut(s) 545
TseFI GTSAC 1 cut(s) 420
Tsp45I GTSAC 1 cut(s) 420
TspGWI ACGGA 2 cut(s) 169, 401
VpaK11BI GGWCC 1 cut(s) 290
Zsp2I ATGCAT 1 cut(s) 556
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.