Rroxscaffold_5G00382480

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_roxburghii
GWHEROQ00000005
OG0000314
Physical Location & Seq
Reverse (-)
62308705 .. 62312347
3643 bp
Loading structure...
UTR
Exon/CDS
Intron
Rroxscaffold_5G00382480.1

Sequence Viewer

Length: 339 bp
ATGCATGTCCCTCGCAAGCGCGCTCGTGACTATGACCACGATGACTCTCTTACCGAGATCGACCCCGAGCTCCGCTATTGCTTCCACCGCGAAATCTTCTTGGATGGCTTCGTGCCCATTCCTATCCCACCGAATGCGAGCATAGAGGAGAGGCTTGCCATCTTCCGGCAGAACAATGCATTGTACTATGAAAAGACAAGCAAAGGGTTTGCGGAAGAGCGTCGAAAGATTGACGACCTTGTTAATCGTGTCCAAACCCTAGGGCAAGGATTGCAGCAAACACAGGGCGATTGGATAGCATGTCTCAACGAAGCCAAGCGAACCATGATCAGCTTGTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

112

Amino Acids

13.13

Weight (kDa)

5.9

Isoelectric Point (pI)

61.5

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0000314)

Species Orthologous Gene IDs
fragaria_vesca FvH4_1g02272 FvH4_1g22661 FvH4_2g10242 FvH4_2g34051 FvH4_3g19221 FvH4_3g29651 FvH4_3g30891 FvH4_4g11061 FvH4_5g09250 FvH4_5g15302 FvH4_5g15303 FvH4_5g15304 FvH4_5g28521 FvH4_6g23591 FvH4_7g05710 FvH4_7g19520
pyrus_communis pycom07g06330
rosa_chinensis RchiOBHm_Chr5g0027301 RchiOBHm_Chr6g0251451 RchiOBHm_Chr6g0274861
rosa_laevigata RLG00000007850
rosa_multiflora Rmu_co8230721.1_g000001 Rmu_sc0000271.1_g000027 Rmu_sc0000303.1_g000024 Rmu_sc0000368.1_g000024 Rmu_sc0000621.1_g000037 Rmu_sc0000693.1_g000081 Rmu_sc0001229.1_g000006 Rmu_sc0001373.1_g000003 Rmu_sc0001459.1_g000001 Rmu_sc0001744.1_g000002 Rmu_sc0001909.1_g000002 Rmu_sc0002053.1_g000012 Rmu_sc0002060.1_g000015 Rmu_sc0002119.1_g000036 Rmu_sc0002177.1_g000007 Rmu_sc0002822.1_g000024 Rmu_sc0002965.1_g000015 Rmu_sc0003363.1_g000051 Rmu_sc0003500.1_g000013 Rmu_sc0004191.1_g000020 Rmu_sc0004904.1_g000032 Rmu_sc0005325.1_g000008 Rmu_sc0005947.1_g000040 Rmu_sc0006475.1_g000001 Rmu_sc0006522.1_g000019 Rmu_sc0007102.1_g000005 Rmu_sc0007810.1_g000003 Rmu_sc0008339.1_g000025 Rmu_sc0008698.1_g000004 Rmu_sc0009313.1_g000006 Rmu_sc0009850.1_g000006 Rmu_sc0010598.1_g000003 Rmu_sc0011162.1_g000002 Rmu_sc0011824.1_g000004 Rmu_sc0011900.1_g000010 Rmu_sc0012291.1_g000006 Rmu_sc0012619.1_g000003 Rmu_sc0014679.1_g000001 Rmu_sc0019053.1_g000001 Rmu_sc0021462.1_g000003 Rmu_sc0024172.1_g000001 Rmu_sc0024173.1_g000001 Rmu_ssc0000052.1_g000016 Rmu_ssc0000392.1_g000010 Rmu_ssc0000421.1_g000062 Rmu_ssc0000479.1_g000006
rosa_roxburghii Rroxscaffold_153G00436600 Rroxscaffold_1G00008580 Rroxscaffold_1G00016770 Rroxscaffold_1G00029550 Rroxscaffold_1G00036450 Rroxscaffold_1G00040410 Rroxscaffold_1G00047110 Rroxscaffold_1G00060570 Rroxscaffold_2G00081500 Rroxscaffold_2G00081510 Rroxscaffold_2G00086080 Rroxscaffold_2G00099620 Rroxscaffold_2G00099630 Rroxscaffold_2G00099640 Rroxscaffold_2G00109170 Rroxscaffold_2G00127750 Rroxscaffold_2G00128590 Rroxscaffold_2G00130780 Rroxscaffold_2G00131040 Rroxscaffold_2G00143160 Rroxscaffold_3G00229280 Rroxscaffold_3G00229290 Rroxscaffold_3G00229970 Rroxscaffold_3G00242860 Rroxscaffold_3G00242890 Rroxscaffold_3G00242900 Rroxscaffold_3G00248200 Rroxscaffold_4G00284550 Rroxscaffold_4G00288780 Rroxscaffold_4G00298620 Rroxscaffold_4G00298630 Rroxscaffold_4G00312420 Rroxscaffold_4G00320310 Rroxscaffold_4G00322220 Rroxscaffold_4G00323600 Rroxscaffold_4G00331830 Rroxscaffold_4G00332010 Rroxscaffold_4G00332020 Rroxscaffold_5G00344470 Rroxscaffold_5G00345310 Rroxscaffold_5G00356120 Rroxscaffold_5G00368700 Rroxscaffold_5G00379820 Rroxscaffold_5G00382480 Rroxscaffold_6G00395080 Rroxscaffold_6G00405520 Rroxscaffold_6G00428210 Rroxscaffold_7G00193460
rosa_samantha Rh7CG413200 Rh7DG284900

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccII CGCG 2 cut(s) 21, 90
AciI CCGC 3 cut(s) 73, 88, 212
AfaI GTAC 1 cut(s) 185
AfiI CCNNNNNNNGG 1 cut(s) 165
AluBI AGCT 2 cut(s) 70, 333
AluI AGCT 2 cut(s) 70, 333
Alw21I GWGCWC 1 cut(s) 72
Alw26I GTCTC 1 cut(s) 308
Ama87I CYCGRG 1 cut(s) 65
ApeKI GCWGC 1 cut(s) 274
AspA2I CCTAGG 1 cut(s) 259
AspLEI GCGC 2 cut(s) 21, 23
AvaI CYCGRG 1 cut(s) 65
AvrII CCTAGG 1 cut(s) 259
BaeGI GKGCMC 1 cut(s) 117
BanII GRGCYC 1 cut(s) 72
BauI CACGAG 1 cut(s) 24
Bbv12I GWGCWC 1 cut(s) 72
BbvI GCAGC 1 cut(s) 286
BccI CCATC 2 cut(s) 98, 167
BcgI CGANNNNNNTGC 1 cut(s) 27
BclI TGATCA 1 cut(s) 327
BcoDI GTCTC 1 cut(s) 308
BfaI CTAG 1 cut(s) 260
BisI GCNGC 1 cut(s) 275
BlnI CCTAGG 1 cut(s) 259
BlsI GCNGC 1 cut(s) 276
BmeT110I CYCGRG 1 cut(s) 65
BsaJI CCNNGG 1 cut(s) 259
Bsc4I CCNNNNNNNGG 1 cut(s) 165
BseDI CCNNGG 1 cut(s) 259
BseGI GGATG 1 cut(s) 109
BseLI CCNNNNNNNGG 1 cut(s) 165
BsePI GCGCGC 1 cut(s) 19
BseRI GAGGAG 1 cut(s) 161
BseSI GKGCMC 1 cut(s) 117
BseXI GCAGC 1 cut(s) 286
Bsh1236I CGCG 2 cut(s) 21, 90
BsiHKAI GWGCWC 1 cut(s) 72
BsiHKCI CYCGRG 1 cut(s) 65
BsiSI CCGG 1 cut(s) 166
BslI CCNNNNNNNGG 1 cut(s) 165
BsmAI GTCTC 1 cut(s) 308
BsmI GAATGC 1 cut(s) 139
BsoBI CYCGRG 1 cut(s) 65
Bsp1286I GDGCHC 2 cut(s) 72, 117
Bsp143I GATC 2 cut(s) 57, 327
BspACI CCGC 3 cut(s) 73, 88, 212
BspFNI CGCG 2 cut(s) 21, 90
BspQI GCTCTTC 1 cut(s) 210
BssECI CCNNGG 1 cut(s) 259
BssHII GCGCGC 1 cut(s) 19
BssMI GATC 2 cut(s) 57, 327
BssSI CACGAG 1 cut(s) 24
BssT1I CCWWGG 1 cut(s) 259
Bst2BI CACGAG 1 cut(s) 24
Bst6I CTCTTC 1 cut(s) 210
BstAPI GCANNNNNTGC 1 cut(s) 271
BstC8I GCNNGC 4 cut(s) 17, 21, 139, 156
BstF5I GGATG 1 cut(s) 109
BstFNI CGCG 2 cut(s) 21, 90
BstHHI GCGC 2 cut(s) 21, 23
BstKTI GATC 2 cut(s) 60, 330
BstMAI GTCTC 1 cut(s) 308
BstMBI GATC 2 cut(s) 57, 327
BstMWI GCNNNNNNNGC 2 cut(s) 87, 271
BstNSI RCATGY 2 cut(s) 8, 303
BstSLI GKGCMC 1 cut(s) 117
BstUI CGCG 2 cut(s) 21, 90
BstV1I GCAGC 1 cut(s) 286
BtsCI GGATG 1 cut(s) 109
Cac8I GCNNGC 4 cut(s) 17, 21, 139, 156
CfoI GCGC 2 cut(s) 21, 23
CseI GACGC 1 cut(s) 209
Csp6I GTAC 1 cut(s) 184
CviAII CATG 3 cut(s) 5, 300, 325
CviJI RGCY 5 cut(s) 70, 108, 154, 314, 333
CviKI_1 RGCY 5 cut(s) 70, 108, 154, 314, 333
CviQI GTAC 1 cut(s) 184
DpnI GATC 2 cut(s) 59, 329
DpnII GATC 2 cut(s) 57, 327
Eam1104I CTCTTC 1 cut(s) 210
EarI CTCTTC 1 cut(s) 210
Ecl136II GAGCTC 1 cut(s) 70
Eco130I CCWWGG 1 cut(s) 259
Eco24I GRGCYC 1 cut(s) 72
Eco53kI GAGCTC 1 cut(s) 70
Eco88I CYCGRG 1 cut(s) 65
EcoICRI GAGCTC 1 cut(s) 70
EcoT14I CCWWGG 1 cut(s) 259
EcoT22I ATGCAT 2 cut(s) 6, 181
EcoT38I GRGCYC 1 cut(s) 72
ErhI CCWWGG 1 cut(s) 259
FaeI CATG 3 cut(s) 8, 303, 328
FaiI YATR 6 cut(s) 6, 33, 143, 189, 301, 326
FatI CATG 3 cut(s) 4, 299, 324
FbaI TGATCA 1 cut(s) 327
Fnu4HI GCNGC 1 cut(s) 275
FokI GGATG 1 cut(s) 116
FriOI GRGCYC 1 cut(s) 72
Fsp4HI GCNGC 1 cut(s) 275
FspBI CTAG 1 cut(s) 260
GlaI GCGC 2 cut(s) 20, 22
GluI GCNGC 1 cut(s) 275
HapII CCGG 1 cut(s) 166
HgaI GACGC 1 cut(s) 209
HhaI GCGC 2 cut(s) 21, 23
Hin1II CATG 3 cut(s) 8, 303, 328
Hin6I GCGC 2 cut(s) 19, 21
HinP1I GCGC 2 cut(s) 19, 21
HinfI GANTC 1 cut(s) 44
HpaII CCGG 1 cut(s) 166
Hpy188III TCNNGA 1 cut(s) 26
Hpy99I CGWCG 1 cut(s) 225
HpyCH4V TGCA 3 cut(s) 4, 179, 274
HpyF10VI GCNNNNNNNGC 2 cut(s) 87, 271
Hsp92II CATG 3 cut(s) 8, 303, 328
HspAI GCGC 2 cut(s) 19, 21
Ksp22I TGATCA 1 cut(s) 327
Kzo9I GATC 2 cut(s) 57, 327
LguI GCTCTTC 1 cut(s) 210
LmnI GCTCC 1 cut(s) 75
LpnPI CCDG 2 cut(s) 179, 269
Lsp1109I GCAGC 1 cut(s) 286
MaeI CTAG 1 cut(s) 260
MaeIII GTNAC 1 cut(s) 26
MalI GATC 2 cut(s) 59, 329
MboI GATC 2 cut(s) 57, 327
MboII GAAGA 3 cut(s) 88, 154, 227
MhlI GDGCHC 2 cut(s) 72, 117
MlyI GAGTC 1 cut(s) 38
MnlI CCTC 3 cut(s) 21, 139, 144
Mph1103I ATGCAT 2 cut(s) 6, 181
MseI TTAA 1 cut(s) 243
MspI CCGG 1 cut(s) 166
Mva1269I GAATGC 1 cut(s) 139
MvnI CGCG 2 cut(s) 21, 90
MwoI GCNNNNNNNGC 2 cut(s) 87, 271
NdeII GATC 2 cut(s) 57, 327
NlaIII CATG 3 cut(s) 8, 303, 328
NmuCI GTSAC 1 cut(s) 26
NsiI ATGCAT 2 cut(s) 6, 181
NspI RCATGY 2 cut(s) 8, 303
PauI GCGCGC 1 cut(s) 19
PciSI GCTCTTC 1 cut(s) 210
PctI GAATGC 1 cut(s) 139
PkrI GCNGC 1 cut(s) 276
PleI GAGTC 1 cut(s) 38
PpsI GAGTC 1 cut(s) 38
Psp124BI GAGCTC 1 cut(s) 72
PteI GCGCGC 1 cut(s) 19
RsaI GTAC 1 cut(s) 185
RsaNI GTAC 1 cut(s) 184
SacI GAGCTC 1 cut(s) 72
SapI GCTCTTC 1 cut(s) 210
SaqAI TTAA 1 cut(s) 243
SatI GCNGC 1 cut(s) 275
Sau3AI GATC 2 cut(s) 57, 327
SchI GAGTC 1 cut(s) 38
SduI GDGCHC 2 cut(s) 72, 117
SetI ASST 3 cut(s) 72, 240, 335
SsiI CCGC 3 cut(s) 73, 88, 212
SspMI CTAG 1 cut(s) 260
SstI GAGCTC 1 cut(s) 72
StyI CCWWGG 1 cut(s) 259
TaqI TCGA 2 cut(s) 60, 223
TatI WGTACW 1 cut(s) 183
Tru1I TTAA 1 cut(s) 243
Tru9I TTAA 1 cut(s) 243
TseFI GTSAC 1 cut(s) 26
TseI GCWGC 1 cut(s) 274
Tsp45I GTSAC 1 cut(s) 26
TspDTI ATGAA 1 cut(s) 204
XceI RCATGY 2 cut(s) 8, 303
XmaJI CCTAGG 1 cut(s) 259
XspI CTAG 1 cut(s) 260
Zsp2I ATGCAT 2 cut(s) 6, 181
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.