Rroxscaffold_3G00229290

Belongs to the tRNA nucleotidyltransferase poly(A) polymerase family

Basic Information

Type: gene
Biological Identity
rosa_roxburghii
GWHEROQ00000003
Physical Location & Seq
Forward (+)
13785208 .. 13785871
664 bp
Loading structure...
UTR
Exon/CDS
Intron
Rroxscaffold_3G00229290.1

Sequence Viewer

Length: 360 bp
ATGGCCCACCTTGCTATCATCAATCTAGCTTTGGCCATGCTACTGGACGTCATGGTGAAGTCCATAGAGGCATCTCAATATGATGCCTGGACAATGGATAGAGGCAAACAAATACTTGATATGCCTATCTTTGAAGAGGAGATCAATTCATCAAATTTTGGTGATTCTAAATATGATCTCGATGGCGAGCCAATATATGATGAATATGATGATAATTACAATCGATTATTGGTTCCAAAATCGTATGCGGAGTACAAGTCTTTTGAAGTTCTTGATATGGAGAATTTTAACCAACAAGTGGTTAAATGCAAAAGCCAATCTGTGGCTTCTTCGAAGACACCATGTTCTATGACATGGTAG

Protein Analysis

119

Amino Acids

13.68

Weight (kDa)

4.33

Isoelectric Point (pI)

43.91

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready

Orthologous Genes (Group: OG0000314)

Species Orthologous Gene IDs
fragaria_vesca FvH4_1g02272 FvH4_1g22661 FvH4_2g10242 FvH4_2g34051 FvH4_3g19221 FvH4_3g29651 FvH4_3g30891 FvH4_4g11061 FvH4_5g09250 FvH4_5g15302 FvH4_5g15303 FvH4_5g15304 FvH4_5g28521 FvH4_6g23591 FvH4_7g05710 FvH4_7g19520
pyrus_communis pycom07g06330
rosa_chinensis RchiOBHm_Chr5g0027301 RchiOBHm_Chr6g0251451 RchiOBHm_Chr6g0274861
rosa_laevigata RLG00000007850
rosa_multiflora Rmu_co8230721.1_g000001 Rmu_sc0000271.1_g000027 Rmu_sc0000303.1_g000024 Rmu_sc0000368.1_g000024 Rmu_sc0000621.1_g000037 Rmu_sc0000693.1_g000081 Rmu_sc0001229.1_g000006 Rmu_sc0001373.1_g000003 Rmu_sc0001459.1_g000001 Rmu_sc0001744.1_g000002 Rmu_sc0001909.1_g000002 Rmu_sc0002053.1_g000012 Rmu_sc0002060.1_g000015 Rmu_sc0002119.1_g000036 Rmu_sc0002177.1_g000007 Rmu_sc0002822.1_g000024 Rmu_sc0002965.1_g000015 Rmu_sc0003363.1_g000051 Rmu_sc0003500.1_g000013 Rmu_sc0004191.1_g000020 Rmu_sc0004904.1_g000032 Rmu_sc0005325.1_g000008 Rmu_sc0005947.1_g000040 Rmu_sc0006475.1_g000001 Rmu_sc0006522.1_g000019 Rmu_sc0007102.1_g000005 Rmu_sc0007810.1_g000003 Rmu_sc0008339.1_g000025 Rmu_sc0008698.1_g000004 Rmu_sc0009313.1_g000006 Rmu_sc0009850.1_g000006 Rmu_sc0010598.1_g000003 Rmu_sc0011162.1_g000002 Rmu_sc0011824.1_g000004 Rmu_sc0011900.1_g000010 Rmu_sc0012291.1_g000006 Rmu_sc0012619.1_g000003 Rmu_sc0014679.1_g000001 Rmu_sc0019053.1_g000001 Rmu_sc0021462.1_g000003 Rmu_sc0024172.1_g000001 Rmu_sc0024173.1_g000001 Rmu_ssc0000052.1_g000016 Rmu_ssc0000392.1_g000010 Rmu_ssc0000421.1_g000062 Rmu_ssc0000479.1_g000006
rosa_roxburghii Rroxscaffold_153G00436600 Rroxscaffold_1G00008580 Rroxscaffold_1G00016770 Rroxscaffold_1G00029550 Rroxscaffold_1G00036450 Rroxscaffold_1G00040410 Rroxscaffold_1G00047110 Rroxscaffold_1G00060570 Rroxscaffold_2G00081500 Rroxscaffold_2G00081510 Rroxscaffold_2G00086080 Rroxscaffold_2G00099620 Rroxscaffold_2G00099630 Rroxscaffold_2G00099640 Rroxscaffold_2G00109170 Rroxscaffold_2G00127750 Rroxscaffold_2G00128590 Rroxscaffold_2G00130780 Rroxscaffold_2G00131040 Rroxscaffold_2G00143160 Rroxscaffold_3G00229280 Rroxscaffold_3G00229290 Rroxscaffold_3G00229970 Rroxscaffold_3G00242860 Rroxscaffold_3G00242890 Rroxscaffold_3G00242900 Rroxscaffold_3G00248200 Rroxscaffold_4G00284550 Rroxscaffold_4G00288780 Rroxscaffold_4G00298620 Rroxscaffold_4G00298630 Rroxscaffold_4G00312420 Rroxscaffold_4G00320310 Rroxscaffold_4G00322220 Rroxscaffold_4G00323600 Rroxscaffold_4G00331830 Rroxscaffold_4G00332010 Rroxscaffold_4G00332020 Rroxscaffold_5G00344470 Rroxscaffold_5G00345310 Rroxscaffold_5G00356120 Rroxscaffold_5G00368700 Rroxscaffold_5G00379820 Rroxscaffold_5G00382480 Rroxscaffold_6G00395080 Rroxscaffold_6G00405520 Rroxscaffold_6G00428210 Rroxscaffold_7G00193460
rosa_samantha Rh7CG413200 Rh7DG284900

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AatII GACGTC 1 cut(s) 51
AccB7I CCANNNNNTGG 2 cut(s) 298, 322
AciI CCGC 1 cut(s) 248
AcoI YGGCCR 1 cut(s) 33
AcsI RAATTY 2 cut(s) 154, 283
AcyI GRCGYC 1 cut(s) 48
AfaI GTAC 1 cut(s) 254
AfiI CCNNNNNNNGG 2 cut(s) 298, 322
AgsI TTSAA 2 cut(s) 134, 266
AjnI CCWGG 1 cut(s) 86
AluBI AGCT 1 cut(s) 29
AluI AGCT 1 cut(s) 29
AoxI GGCC 2 cut(s) 3, 33
ApoI RAATTY 2 cut(s) 154, 283
AspS9I GGNCC 1 cut(s) 4
AsuHPI GGTGA 2 cut(s) 67, 173
AsuII TTCGAA 1 cut(s) 332
BalI TGGCCA 1 cut(s) 35
BbsI GAAGAC 1 cut(s) 341
BccI CCATC 1 cut(s) 176
BciT130I CCWGG 1 cut(s) 88
BfaI CTAG 1 cut(s) 26
Bme1390I CCNGG 1 cut(s) 88
BmgT120I GGNCC 1 cut(s) 4
BmiI GGNNCC 1 cut(s) 234
BmrFI CCNGG 1 cut(s) 88
BmsI GCATC 2 cut(s) 73, 80
BpiI GAAGAC 1 cut(s) 341
Bpu14I TTCGAA 1 cut(s) 332
Bsa29I ATCGAT 1 cut(s) 223
BsaHI GRCGYC 1 cut(s) 48
BsaXI ACNNNNNCTCC 2 cut(s) 242, 272
Bsc4I CCNNNNNNNGG 2 cut(s) 298, 322
Bse1I ACTGG 1 cut(s) 48
BseBI CCWGG 1 cut(s) 88
BseCI ATCGAT 1 cut(s) 223
BseLI CCNNNNNNNGG 2 cut(s) 298, 322
BseNI ACTGG 1 cut(s) 48
BseRI GAGGAG 1 cut(s) 152
BshFI GGCC 2 cut(s) 5, 35
BshVI ATCGAT 1 cut(s) 223
BslI CCNNNNNNNGG 2 cut(s) 298, 322
BsnI GGCC 2 cut(s) 5, 35
Bsp119I TTCGAA 1 cut(s) 332
Bsp143I GATC 2 cut(s) 141, 175
BspACI CCGC 1 cut(s) 248
BspANI GGCC 2 cut(s) 5, 35
BspDI ATCGAT 1 cut(s) 223
BspLI GGNNCC 1 cut(s) 234
BspT104I TTCGAA 1 cut(s) 332
BsrI ACTGG 1 cut(s) 48
BssMI GATC 2 cut(s) 141, 175
BssNI GRCGYC 1 cut(s) 48
Bst2UI CCWGG 1 cut(s) 88
Bst6I CTCTTC 1 cut(s) 129
BstACI GRCGYC 1 cut(s) 48
BstBI TTCGAA 1 cut(s) 332
BstC8I GCNNGC 1 cut(s) 188
BstKTI GATC 2 cut(s) 144, 178
BstMBI GATC 2 cut(s) 141, 175
BstMWI GCNNNNNNNGC 1 cut(s) 11
BstNI CCWGG 1 cut(s) 88
BstSCI CCNGG 1 cut(s) 86
BstV2I GAAGAC 1 cut(s) 341
BstXI CCANNNNNNTGG 1 cut(s) 43
Bsu15I ATCGAT 1 cut(s) 223
BsuRI GGCC 2 cut(s) 5, 35
BsuTUI ATCGAT 1 cut(s) 223
Cac8I GCNNGC 1 cut(s) 188
Cfr13I GGNCC 1 cut(s) 4
ClaI ATCGAT 1 cut(s) 223
Csp6I GTAC 1 cut(s) 253
CviAII CATG 4 cut(s) 37, 52, 342, 354
CviJI RGCY 6 cut(s) 5, 29, 35, 190, 315, 326
CviKI_1 RGCY 6 cut(s) 5, 29, 35, 190, 315, 326
CviQI GTAC 1 cut(s) 253
DpnI GATC 2 cut(s) 143, 177
DpnII GATC 2 cut(s) 141, 175
EaeI YGGCCR 1 cut(s) 33
Eam1104I CTCTTC 1 cut(s) 129
EarI CTCTTC 1 cut(s) 129
EcoRII CCWGG 1 cut(s) 86
FaeI CATG 4 cut(s) 40, 55, 345, 357
FatI CATG 4 cut(s) 36, 51, 341, 353
FspBI CTAG 1 cut(s) 26
HaeIII GGCC 2 cut(s) 5, 35
Hin1I GRCGYC 1 cut(s) 48
Hin1II CATG 4 cut(s) 40, 55, 345, 357
HinfI GANTC 1 cut(s) 164
HphI GGTGA 2 cut(s) 67, 173
Hpy188III TCNNGA 2 cut(s) 179, 272
HpyCH4IV ACGT 1 cut(s) 48
HpyCH4V TGCA 1 cut(s) 309
HpyF10VI GCNNNNNNNGC 1 cut(s) 11
HpySE526I ACGT 1 cut(s) 48
Hsp92I GRCGYC 1 cut(s) 48
Hsp92II CATG 4 cut(s) 40, 55, 345, 357
Kzo9I GATC 2 cut(s) 141, 175
LpnPI CCDG 3 cut(s) 29, 73, 100
LweI GCATC 2 cut(s) 73, 80
MaeI CTAG 1 cut(s) 26
MaeII ACGT 1 cut(s) 48
MalI GATC 2 cut(s) 143, 177
MboI GATC 2 cut(s) 141, 175
MboII GAAGA 3 cut(s) 146, 321, 346
MlsI TGGCCA 1 cut(s) 35
MluCI AATT 4 cut(s) 145, 154, 214, 283
MluNI TGGCCA 1 cut(s) 35
MnlI CCTC 3 cut(s) 61, 95, 130
Mox20I TGGCCA 1 cut(s) 35
MscI TGGCCA 1 cut(s) 35
MseI TTAA 2 cut(s) 288, 303
Msp20I TGGCCA 1 cut(s) 35
MspR9I CCNGG 1 cut(s) 88
MvaI CCWGG 1 cut(s) 88
MwoI GCNNNNNNNGC 1 cut(s) 11
NdeII GATC 2 cut(s) 141, 175
NlaIII CATG 4 cut(s) 40, 55, 345, 357
NlaIV GGNNCC 1 cut(s) 234
NspV TTCGAA 1 cut(s) 332
PfeI GAWTC 1 cut(s) 164
PflMI CCANNNNNTGG 2 cut(s) 298, 322
Psp6I CCWGG 1 cut(s) 86
PspGI CCWGG 1 cut(s) 86
PspN4I GGNNCC 1 cut(s) 234
PspPI GGNCC 1 cut(s) 4
RsaI GTAC 1 cut(s) 254
RsaNI GTAC 1 cut(s) 253
SaqAI TTAA 2 cut(s) 288, 303
Sau3AI GATC 2 cut(s) 141, 175
Sau96I GGNCC 1 cut(s) 4
ScrFI CCNGG 1 cut(s) 88
SetI ASST 3 cut(s) 12, 31, 51
SfaNI GCATC 2 cut(s) 73, 80
SfuI TTCGAA 1 cut(s) 332
Sse9I AATT 4 cut(s) 145, 154, 214, 283
SsiI CCGC 1 cut(s) 248
SspMI CTAG 1 cut(s) 26
StyD4I CCNGG 1 cut(s) 86
TaiI ACGT 1 cut(s) 51
TaqI TCGA 3 cut(s) 180, 223, 332
TasI AATT 4 cut(s) 145, 154, 214, 283
TatI WGTACW 1 cut(s) 252
TfiI GAWTC 1 cut(s) 164
Tru1I TTAA 2 cut(s) 288, 303
Tru9I TTAA 2 cut(s) 288, 303
TspDTI ATGAA 2 cut(s) 138, 216
Van91I CCANNNNNTGG 2 cut(s) 298, 322
XapI RAATTY 2 cut(s) 154, 283
XspI CTAG 1 cut(s) 26
ZraI GACGTC 1 cut(s) 49
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.