Rroxscaffold_1G00016770

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_roxburghii
GWHEROQ00000001
OG0000314
Physical Location & Seq
Forward (+)
20784657 .. 20790139
5483 bp
Loading structure...
UTR
Exon/CDS
Intron
Rroxscaffold_1G00016770.1

Sequence Viewer

Length: 330 bp
ATGGGTCGGAAAGCTGATAATGGTGGGGAGGTTTTGGGTAATGAAGATGATGGGCCAGTACATGGTAATGAGGATGATAGGCCTCAAGCCCAACCTCGGAAGAATGTGCAGCCCCCAAGCTGCGACCCTATGAAGCCTCAAGCTGCTAATCTGTGCAGCCCCAAGCTACGACCCGGTGCAGCAACAAATGCCGAGAGGAAAATCTTTACCAAAAGAAATTCCGAAGTCATGGAGACGATAGAAGGCTATGTGCCCATTCCCATTCCGAGAGATGCGAGCATAGAAGAGCGGCTTGATATCCTTCAAAAAGAATTCTACCGCATACCATGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

109

Amino Acids

12.12

Weight (kDa)

5.44

Isoelectric Point (pI)

51.84

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0000314)

Species Orthologous Gene IDs
fragaria_vesca FvH4_1g02272 FvH4_1g22661 FvH4_2g10242 FvH4_2g34051 FvH4_3g19221 FvH4_3g29651 FvH4_3g30891 FvH4_4g11061 FvH4_5g09250 FvH4_5g15302 FvH4_5g15303 FvH4_5g15304 FvH4_5g28521 FvH4_6g23591 FvH4_7g05710 FvH4_7g19520
pyrus_communis pycom07g06330
rosa_chinensis RchiOBHm_Chr5g0027301 RchiOBHm_Chr6g0251451 RchiOBHm_Chr6g0274861
rosa_laevigata RLG00000007850
rosa_multiflora Rmu_co8230721.1_g000001 Rmu_sc0000271.1_g000027 Rmu_sc0000303.1_g000024 Rmu_sc0000368.1_g000024 Rmu_sc0000621.1_g000037 Rmu_sc0000693.1_g000081 Rmu_sc0001229.1_g000006 Rmu_sc0001373.1_g000003 Rmu_sc0001459.1_g000001 Rmu_sc0001744.1_g000002 Rmu_sc0001909.1_g000002 Rmu_sc0002053.1_g000012 Rmu_sc0002060.1_g000015 Rmu_sc0002119.1_g000036 Rmu_sc0002177.1_g000007 Rmu_sc0002822.1_g000024 Rmu_sc0002965.1_g000015 Rmu_sc0003363.1_g000051 Rmu_sc0003500.1_g000013 Rmu_sc0004191.1_g000020 Rmu_sc0004904.1_g000032 Rmu_sc0005325.1_g000008 Rmu_sc0005947.1_g000040 Rmu_sc0006475.1_g000001 Rmu_sc0006522.1_g000019 Rmu_sc0007102.1_g000005 Rmu_sc0007810.1_g000003 Rmu_sc0008339.1_g000025 Rmu_sc0008698.1_g000004 Rmu_sc0009313.1_g000006 Rmu_sc0009850.1_g000006 Rmu_sc0010598.1_g000003 Rmu_sc0011162.1_g000002 Rmu_sc0011824.1_g000004 Rmu_sc0011900.1_g000010 Rmu_sc0012291.1_g000006 Rmu_sc0012619.1_g000003 Rmu_sc0014679.1_g000001 Rmu_sc0019053.1_g000001 Rmu_sc0021462.1_g000003 Rmu_sc0024172.1_g000001 Rmu_sc0024173.1_g000001 Rmu_ssc0000052.1_g000016 Rmu_ssc0000392.1_g000010 Rmu_ssc0000421.1_g000062 Rmu_ssc0000479.1_g000006
rosa_roxburghii Rroxscaffold_153G00436600 Rroxscaffold_1G00008580 Rroxscaffold_1G00016770 Rroxscaffold_1G00029550 Rroxscaffold_1G00036450 Rroxscaffold_1G00040410 Rroxscaffold_1G00047110 Rroxscaffold_1G00060570 Rroxscaffold_2G00081500 Rroxscaffold_2G00081510 Rroxscaffold_2G00086080 Rroxscaffold_2G00099620 Rroxscaffold_2G00099630 Rroxscaffold_2G00099640 Rroxscaffold_2G00109170 Rroxscaffold_2G00127750 Rroxscaffold_2G00128590 Rroxscaffold_2G00130780 Rroxscaffold_2G00131040 Rroxscaffold_2G00143160 Rroxscaffold_3G00229280 Rroxscaffold_3G00229290 Rroxscaffold_3G00229970 Rroxscaffold_3G00242860 Rroxscaffold_3G00242890 Rroxscaffold_3G00242900 Rroxscaffold_3G00248200 Rroxscaffold_4G00284550 Rroxscaffold_4G00288780 Rroxscaffold_4G00298620 Rroxscaffold_4G00298630 Rroxscaffold_4G00312420 Rroxscaffold_4G00320310 Rroxscaffold_4G00322220 Rroxscaffold_4G00323600 Rroxscaffold_4G00331830 Rroxscaffold_4G00332010 Rroxscaffold_4G00332020 Rroxscaffold_5G00344470 Rroxscaffold_5G00345310 Rroxscaffold_5G00356120 Rroxscaffold_5G00368700 Rroxscaffold_5G00379820 Rroxscaffold_5G00382480 Rroxscaffold_6G00395080 Rroxscaffold_6G00405520 Rroxscaffold_6G00428210 Rroxscaffold_7G00193460
rosa_samantha Rh7CG413200 Rh7DG284900

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB7I CCANNNNNTGG 1 cut(s) 62
AccBSI CCGCTC 1 cut(s) 289
AciI CCGC 2 cut(s) 289, 319
AcsI RAATTY 2 cut(s) 217, 311
AfaI GTAC 1 cut(s) 60
AfiI CCNNNNNNNGG 2 cut(s) 62, 96
AgsI TTSAA 1 cut(s) 305
AluBI AGCT 4 cut(s) 14, 120, 143, 166
AluI AGCT 4 cut(s) 14, 120, 143, 166
Alw26I GTCTC 1 cut(s) 227
AoxI GGCC 2 cut(s) 53, 80
ApeKI GCWGC 5 cut(s) 109, 120, 143, 156, 179
ApoI RAATTY 2 cut(s) 217, 311
AspS9I GGNCC 1 cut(s) 53
AsuC2I CCSGG 1 cut(s) 174
BaeGI GKGCMC 1 cut(s) 255
BbvI GCAGC 5 cut(s) 107, 121, 130, 168, 191
BccI CCATC 1 cut(s) 44
BcnI CCSGG 1 cut(s) 174
BcoDI GTCTC 1 cut(s) 227
BisI GCNGC 6 cut(s) 110, 121, 144, 157, 180, 290
BlsI GCNGC 6 cut(s) 111, 122, 145, 158, 181, 291
Bme1390I CCNGG 1 cut(s) 174
BmgT120I GGNCC 1 cut(s) 53
BmrFI CCNGG 1 cut(s) 174
BmsI GCATC 1 cut(s) 262
BpuEI CTTGAG 2 cut(s) 69, 123
BpuMI CCSGG 1 cut(s) 174
BsaJI CCNNGG 1 cut(s) 95
Bsc4I CCNNNNNNNGG 2 cut(s) 62, 96
Bse1I ACTGG 1 cut(s) 56
BseDI CCNNGG 1 cut(s) 95
BseGI GGATG 1 cut(s) 79
BseLI CCNNNNNNNGG 2 cut(s) 62, 96
BseNI ACTGG 1 cut(s) 56
BseSI GKGCMC 1 cut(s) 255
BseXI GCAGC 5 cut(s) 107, 121, 130, 168, 191
BsgI GTGCAG 3 cut(s) 128, 175, 198
BshFI GGCC 2 cut(s) 55, 82
BsiSI CCGG 1 cut(s) 174
BslI CCNNNNNNNGG 2 cut(s) 62, 96
BsmAI GTCTC 1 cut(s) 227
BsmBI CGTCTC 1 cut(s) 227
BsnI GGCC 2 cut(s) 55, 82
Bsp1286I GDGCHC 1 cut(s) 255
BspACI CCGC 2 cut(s) 289, 319
BspANI GGCC 2 cut(s) 55, 82
BspQI GCTCTTC 1 cut(s) 279
BsrBI CCGCTC 1 cut(s) 289
BsrI ACTGG 1 cut(s) 56
BssECI CCNNGG 1 cut(s) 95
Bst6I CTCTTC 1 cut(s) 279
BstAPI GCANNNNNTGC 1 cut(s) 188
BstC8I GCNNGC 1 cut(s) 277
BstF5I GGATG 1 cut(s) 79
BstMAI GTCTC 1 cut(s) 227
BstMWI GCNNNNNNNGC 1 cut(s) 188
BstSCI CCNGG 1 cut(s) 172
BstSLI GKGCMC 1 cut(s) 255
BstV1I GCAGC 5 cut(s) 107, 121, 130, 168, 191
BsuRI GGCC 2 cut(s) 55, 82
BtsCI GGATG 1 cut(s) 79
Cac8I GCNNGC 1 cut(s) 277
Cfr13I GGNCC 1 cut(s) 53
Csp6I GTAC 1 cut(s) 59
CviAII CATG 3 cut(s) 62, 229, 327
CviQI GTAC 1 cut(s) 59
Eam1104I CTCTTC 1 cut(s) 279
EarI CTCTTC 1 cut(s) 279
Eco147I AGGCCT 1 cut(s) 82
Eco32I GATATC 1 cut(s) 298
EcoRI GAATTC 1 cut(s) 311
EcoRV GATATC 1 cut(s) 298
Esp3I CGTCTC 1 cut(s) 227
FaeI CATG 3 cut(s) 65, 232, 330
FaiI YATR 7 cut(s) 63, 131, 230, 249, 281, 323, 328
FalI AAGNNNNNCTT 2 cut(s) 276, 308
FatI CATG 3 cut(s) 61, 228, 326
Fnu4HI GCNGC 6 cut(s) 110, 121, 144, 157, 180, 290
FokI GGATG 1 cut(s) 86
Fsp4HI GCNGC 6 cut(s) 110, 121, 144, 157, 180, 290
GluI GCNGC 6 cut(s) 110, 121, 144, 157, 180, 290
HaeIII GGCC 2 cut(s) 55, 82
HapII CCGG 1 cut(s) 174
Hin1II CATG 3 cut(s) 65, 232, 330
HpaII CCGG 1 cut(s) 174
Hpy188I TCNGA 4 cut(s) 9, 99, 223, 267
HpyAV CCTTC 2 cut(s) 236, 311
HpyCH4V TGCA 3 cut(s) 109, 156, 179
HpyF10VI GCNNNNNNNGC 1 cut(s) 188
Hsp92II CATG 3 cut(s) 65, 232, 330
LguI GCTCTTC 1 cut(s) 279
LpnPI CCDG 2 cut(s) 69, 187
Lsp1109I GCAGC 5 cut(s) 107, 121, 130, 168, 191
LweI GCATC 1 cut(s) 262
MbiI CCGCTC 1 cut(s) 289
MboII GAAGA 3 cut(s) 56, 112, 296
MhlI GDGCHC 1 cut(s) 255
MluCI AATT 2 cut(s) 217, 311
MnlI CCTC 6 cut(s) 22, 64, 93, 105, 147, 189
MslI CAYNNNNRTG 1 cut(s) 66
MspI CCGG 1 cut(s) 174
MspR9I CCNGG 1 cut(s) 174
MwoI GCNNNNNNNGC 1 cut(s) 188
NciI CCSGG 1 cut(s) 174
NlaIII CATG 3 cut(s) 65, 232, 330
NmeAIII GCCGAG 1 cut(s) 217
PceI AGGCCT 1 cut(s) 82
PciSI GCTCTTC 1 cut(s) 279
PflMI CCANNNNNTGG 1 cut(s) 62
PkrI GCNGC 6 cut(s) 111, 122, 145, 158, 181, 291
PspPI GGNCC 1 cut(s) 53
RsaI GTAC 1 cut(s) 60
RsaNI GTAC 1 cut(s) 59
RseI CAYNNNNRTG 1 cut(s) 66
SapI GCTCTTC 1 cut(s) 279
SatI GCNGC 6 cut(s) 110, 121, 144, 157, 180, 290
Sau96I GGNCC 1 cut(s) 53
ScrFI CCNGG 1 cut(s) 174
SduI GDGCHC 1 cut(s) 255
SetI ASST 6 cut(s) 16, 33, 97, 122, 145, 168
SfaNI GCATC 1 cut(s) 262
SmiMI CAYNNNNRTG 1 cut(s) 66
SmlI CTYRAG 2 cut(s) 84, 138
SmoI CTYRAG 2 cut(s) 84, 138
Sse9I AATT 2 cut(s) 217, 311
SseBI AGGCCT 1 cut(s) 82
SsiI CCGC 2 cut(s) 289, 319
StuI AGGCCT 1 cut(s) 82
StyD4I CCNGG 1 cut(s) 172
TasI AATT 2 cut(s) 217, 311
TatI WGTACW 1 cut(s) 58
TauI GCSGC 1 cut(s) 292
TseI GCWGC 5 cut(s) 109, 120, 143, 156, 179
TspDTI ATGAA 2 cut(s) 57, 146
Van91I CCANNNNNTGG 1 cut(s) 62
XapI RAATTY 2 cut(s) 217, 311
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.