Rh7DG284900

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr7D
OG0000314
Physical Location & Seq
Forward (+)
31389438 .. 31389916
479 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh7DG284900.1

Sequence Viewer

Length: 345 bp
ATGCAGCAGCACCAGCTGCCTTTCCCTTCTTCCTCTGGAGTTTCTTCATGTAAAACTCTAATTCTTTCCCCTCCAAAATGTACCTGTTATACAAGTTCAAAAGTTATATATATGAACTTGAATAAGATTCCAAGGTTAGCATTAAAGAAACAATGGTCATCATGCTTACCCATCAGATCTTCCACATTGGCCTGGGCGGGAAGAAATGCAAGCCAACAACCTACCACCACTAAACTGCTCTTCGATGTGGGAATCAAGAGTACGATCTTTCTGGCGCTTCTCAAGCTTCCTCAGGAGATTGCTGCTCTTTTTGGTTTCTTCTGTGGTGCCATCTGCCTCCTATAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

114

Amino Acids

12.51

Weight (kDa)

9.74

Isoelectric Point (pI)

64.14

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
Loading...
Style Settings
Image
Tree File
Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0000314)

Species Orthologous Gene IDs
fragaria_vesca FvH4_1g02272 FvH4_1g22661 FvH4_2g10242 FvH4_2g34051 FvH4_3g19221 FvH4_3g29651 FvH4_3g30891 FvH4_4g11061 FvH4_5g09250 FvH4_5g15302 FvH4_5g15303 FvH4_5g15304 FvH4_5g28521 FvH4_6g23591 FvH4_7g05710 FvH4_7g19520
pyrus_communis pycom07g06330
rosa_chinensis RchiOBHm_Chr5g0027301 RchiOBHm_Chr6g0251451 RchiOBHm_Chr6g0274861
rosa_laevigata RLG00000007850
rosa_multiflora Rmu_co8230721.1_g000001 Rmu_sc0000271.1_g000027 Rmu_sc0000303.1_g000024 Rmu_sc0000368.1_g000024 Rmu_sc0000621.1_g000037 Rmu_sc0000693.1_g000081 Rmu_sc0001229.1_g000006 Rmu_sc0001373.1_g000003 Rmu_sc0001459.1_g000001 Rmu_sc0001744.1_g000002 Rmu_sc0001909.1_g000002 Rmu_sc0002053.1_g000012 Rmu_sc0002060.1_g000015 Rmu_sc0002119.1_g000036 Rmu_sc0002177.1_g000007 Rmu_sc0002822.1_g000024 Rmu_sc0002965.1_g000015 Rmu_sc0003363.1_g000051 Rmu_sc0003500.1_g000013 Rmu_sc0004191.1_g000020 Rmu_sc0004904.1_g000032 Rmu_sc0005325.1_g000008 Rmu_sc0005947.1_g000040 Rmu_sc0006475.1_g000001 Rmu_sc0006522.1_g000019 Rmu_sc0007102.1_g000005 Rmu_sc0007810.1_g000003 Rmu_sc0008339.1_g000025 Rmu_sc0008698.1_g000004 Rmu_sc0009313.1_g000006 Rmu_sc0009850.1_g000006 Rmu_sc0010598.1_g000003 Rmu_sc0011162.1_g000002 Rmu_sc0011824.1_g000004 Rmu_sc0011900.1_g000010 Rmu_sc0012291.1_g000006 Rmu_sc0012619.1_g000003 Rmu_sc0014679.1_g000001 Rmu_sc0019053.1_g000001 Rmu_sc0021462.1_g000003 Rmu_sc0024172.1_g000001 Rmu_sc0024173.1_g000001 Rmu_ssc0000052.1_g000016 Rmu_ssc0000392.1_g000010 Rmu_ssc0000421.1_g000062 Rmu_ssc0000479.1_g000006
rosa_roxburghii Rroxscaffold_153G00436600 Rroxscaffold_1G00008580 Rroxscaffold_1G00016770 Rroxscaffold_1G00029550 Rroxscaffold_1G00036450 Rroxscaffold_1G00040410 Rroxscaffold_1G00047110 Rroxscaffold_1G00060570 Rroxscaffold_2G00081500 Rroxscaffold_2G00081510 Rroxscaffold_2G00086080 Rroxscaffold_2G00099620 Rroxscaffold_2G00099630 Rroxscaffold_2G00099640 Rroxscaffold_2G00109170 Rroxscaffold_2G00127750 Rroxscaffold_2G00128590 Rroxscaffold_2G00130780 Rroxscaffold_2G00131040 Rroxscaffold_2G00143160 Rroxscaffold_3G00229280 Rroxscaffold_3G00229290 Rroxscaffold_3G00229970 Rroxscaffold_3G00242860 Rroxscaffold_3G00242890 Rroxscaffold_3G00242900 Rroxscaffold_3G00248200 Rroxscaffold_4G00284550 Rroxscaffold_4G00288780 Rroxscaffold_4G00298620 Rroxscaffold_4G00298630 Rroxscaffold_4G00312420 Rroxscaffold_4G00320310 Rroxscaffold_4G00322220 Rroxscaffold_4G00323600 Rroxscaffold_4G00331830 Rroxscaffold_4G00332010 Rroxscaffold_4G00332020 Rroxscaffold_5G00344470 Rroxscaffold_5G00345310 Rroxscaffold_5G00356120 Rroxscaffold_5G00368700 Rroxscaffold_5G00379820 Rroxscaffold_5G00382480 Rroxscaffold_6G00395080 Rroxscaffold_6G00405520 Rroxscaffold_6G00428210 Rroxscaffold_7G00193460
rosa_samantha Rh7CG413200 Rh7DG284900

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB1I GGYRCC 1 cut(s) 326
AciI CCGC 1 cut(s) 197
AfaI GTAC 2 cut(s) 82, 262
AgsI TTSAA 2 cut(s) 99, 121
AjnI CCWGG 1 cut(s) 191
AluBI AGCT 2 cut(s) 16, 286
AluI AGCT 2 cut(s) 16, 286
AoxI GGCC 1 cut(s) 189
ApeKI GCWGC 4 cut(s) 4, 7, 16, 302
AspLEI GCGC 1 cut(s) 277
AxyI CCTNAGG 1 cut(s) 291
BanI GGYRCC 1 cut(s) 326
BbvI GCAGC 4 cut(s) 3, 16, 19, 289
BccI CCATC 2 cut(s) 179, 338
BciT130I CCWGG 1 cut(s) 193
BfoI RGCGCY 1 cut(s) 278
BglII AGATCT 1 cut(s) 176
BisI GCNGC 4 cut(s) 5, 8, 17, 303
BlsI GCNGC 4 cut(s) 6, 9, 18, 304
Bme1390I CCNGG 1 cut(s) 193
BmiI GGNNCC 1 cut(s) 328
BmrFI CCNGG 1 cut(s) 193
BpmI CTGGAG 1 cut(s) 57
BpuEI CTTGAG 1 cut(s) 266
BsaJI CCNNGG 2 cut(s) 131, 192
Bse21I CCTNAGG 1 cut(s) 291
BseBI CCWGG 1 cut(s) 193
BseDI CCNNGG 2 cut(s) 131, 192
BseMII CTCAG 1 cut(s) 305
BseXI GCAGC 4 cut(s) 3, 16, 19, 289
BshFI GGCC 1 cut(s) 191
BshNI GGYRCC 1 cut(s) 326
BsnI GGCC 1 cut(s) 191
Bsp143I GATC 2 cut(s) 176, 264
BspACI CCGC 1 cut(s) 197
BspANI GGCC 1 cut(s) 191
BspCNI CTCAG 1 cut(s) 304
BspLI GGNNCC 1 cut(s) 328
BspQI GCTCTTC 1 cut(s) 245
BspT107I GGYRCC 1 cut(s) 326
BssECI CCNNGG 2 cut(s) 131, 192
BssMI GATC 2 cut(s) 176, 264
BssT1I CCWWGG 1 cut(s) 131
Bst2UI CCWGG 1 cut(s) 193
Bst6I CTCTTC 1 cut(s) 245
BstAPI GCANNNNNTGC 1 cut(s) 16
BstC8I GCNNGC 1 cut(s) 211
BstDEI CTNAG 1 cut(s) 291
BstH2I RGCGCY 1 cut(s) 278
BstHHI GCGC 1 cut(s) 277
BstKTI GATC 2 cut(s) 179, 267
BstMBI GATC 2 cut(s) 176, 264
BstMWI GCNNNNNNNGC 3 cut(s) 13, 16, 283
BstNI CCWGG 1 cut(s) 193
BstSCI CCNGG 1 cut(s) 191
BstV1I GCAGC 4 cut(s) 3, 16, 19, 289
BstX2I RGATCY 1 cut(s) 176
BstYI RGATCY 1 cut(s) 176
Bsu36I CCTNAGG 1 cut(s) 291
BsuRI GGCC 1 cut(s) 191
Cac8I GCNNGC 1 cut(s) 211
CfoI GCGC 1 cut(s) 277
Csp6I GTAC 2 cut(s) 81, 261
CviAII CATG 2 cut(s) 48, 162
CviJI RGCY 4 cut(s) 16, 191, 213, 286
CviKI_1 RGCY 4 cut(s) 16, 191, 213, 286
CviQI GTAC 2 cut(s) 81, 261
DdeI CTNAG 1 cut(s) 291
DpnI GATC 2 cut(s) 178, 266
DpnII GATC 2 cut(s) 176, 264
Eam1104I CTCTTC 1 cut(s) 245
EarI CTCTTC 1 cut(s) 245
Eco130I CCWWGG 1 cut(s) 131
Eco81I CCTNAGG 1 cut(s) 291
EcoRII CCWGG 1 cut(s) 191
EcoT14I CCWWGG 1 cut(s) 131
ErhI CCWWGG 1 cut(s) 131
FaeI CATG 2 cut(s) 51, 165
FaiI YATR 8 cut(s) 49, 90, 107, 109, 111, 113, 163, 343
FatI CATG 2 cut(s) 47, 161
FauI CCCGC 1 cut(s) 190
Fnu4HI GCNGC 4 cut(s) 5, 8, 17, 303
Fsp4HI GCNGC 4 cut(s) 5, 8, 17, 303
GlaI GCGC 1 cut(s) 276
GluI GCNGC 4 cut(s) 5, 8, 17, 303
GsuI CTGGAG 1 cut(s) 57
HaeII RGCGCY 1 cut(s) 278
HaeIII GGCC 1 cut(s) 191
HhaI GCGC 1 cut(s) 277
Hin1II CATG 2 cut(s) 51, 165
Hin6I GCGC 1 cut(s) 275
HinP1I GCGC 1 cut(s) 275
HindIII AAGCTT 1 cut(s) 284
HinfI GANTC 2 cut(s) 127, 252
Hpy188I TCNGA 1 cut(s) 176
Hpy188III TCNNGA 3 cut(s) 36, 256, 293
HpyAV CCTTC 1 cut(s) 36
HpyCH4V TGCA 2 cut(s) 4, 209
HpyF10VI GCNNNNNNNGC 3 cut(s) 13, 16, 283
HpyF3I CTNAG 1 cut(s) 291
Hsp92II CATG 2 cut(s) 51, 165
HspAI GCGC 1 cut(s) 275
Kzo9I GATC 2 cut(s) 176, 264
LguI GCTCTTC 1 cut(s) 245
LpnPI CCDG 7 cut(s) 21, 26, 97, 178, 205, 257, 278
Lsp1109I GCAGC 4 cut(s) 3, 16, 19, 289
MalI GATC 2 cut(s) 178, 266
MboI GATC 2 cut(s) 176, 264
MboII GAAGA 6 cut(s) 21, 36, 171, 213, 232, 310
MflI RGATCY 1 cut(s) 176
MluCI AATT 1 cut(s) 60
MnlI CCTC 3 cut(s) 43, 81, 300
MseI TTAA 1 cut(s) 143
MspA1I CMGCKG 1 cut(s) 16
MspR9I CCNGG 1 cut(s) 193
MvaI CCWGG 1 cut(s) 193
MwoI GCNNNNNNNGC 3 cut(s) 13, 16, 283
NdeII GATC 2 cut(s) 176, 264
NlaIII CATG 2 cut(s) 51, 165
NlaIV GGNNCC 1 cut(s) 328
PciSI GCTCTTC 1 cut(s) 245
PfeI GAWTC 2 cut(s) 127, 252
PkrI GCNGC 4 cut(s) 6, 9, 18, 304
Psp6I CCWGG 1 cut(s) 191
PspGI CCWGG 1 cut(s) 191
PspN4I GGNNCC 1 cut(s) 328
PsuI RGATCY 1 cut(s) 176
PvuII CAGCTG 1 cut(s) 16
RsaI GTAC 2 cut(s) 82, 262
RsaNI GTAC 2 cut(s) 81, 261
SapI GCTCTTC 1 cut(s) 245
SaqAI TTAA 1 cut(s) 143
SatI GCNGC 4 cut(s) 5, 8, 17, 303
Sau3AI GATC 2 cut(s) 176, 264
ScrFI CCNGG 1 cut(s) 193
SetI ASST 5 cut(s) 18, 86, 137, 223, 288
SmlI CTYRAG 1 cut(s) 281
SmoI CTYRAG 1 cut(s) 281
Sse9I AATT 1 cut(s) 60
SsiI CCGC 1 cut(s) 197
StyD4I CCNGG 1 cut(s) 191
StyI CCWWGG 1 cut(s) 131
TaqI TCGA 1 cut(s) 243
TasI AATT 1 cut(s) 60
TfiI GAWTC 2 cut(s) 127, 252
Tru1I TTAA 1 cut(s) 143
Tru9I TTAA 1 cut(s) 143
TseI GCWGC 4 cut(s) 4, 7, 16, 302
TspDTI ATGAA 2 cut(s) 36, 128
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.