Basic Information

Type: gene

Biological Identity

Species

rosa_roxburghii

Chromosome

GWHEROQ00000004

Orthogroup ID

OG0000314

Physical Location & Seq

Genomic Coordinates Forward (+)

65831454 .. 65832703

Gene Structure 1250 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Rroxscaffold_4G00331830.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 768 bp

ATGTTAGTCCACCAGGTGAATACGACTTTCTCGGTGATTTCATTTGCCTCGATCGATAATGAATGGTTTCTTGGGTGCCATTTCGAGTTTCTTAGTTATCGAGTTCCAAATTTCTTTCCAAAGAAATTTGTCTATGATGGTACTAAACAATCCATAGAGGCGTCTCAATATGATGCCCGGAAAGAGTATAGAGGCAAACAAATATTTGATATGCCTATCTTTAAAGAAGAGATCAATTCACCACTCTTTGGTGACTCTAATTATGATCTCGATGCGGAGCCAATCTATGATGAATATGGTGATAATTATTATTTGATTATCGGTTCCAAAAATCATATGAAGGAGTTCAAGTTCTTTGAAGCTCTTGATACGGAGAATTCGGACCAGCAAGTGGTCGAATGCAAAAGCCAATTCGTGGCTAATTCTACAAAGACCATGTTCTATGATATGGTAGTCGGCGACAAAGCCAATCTATGTTCATCCACATCTCCAAAGTTGCAATTGAAGATCATGTTTCGCCAACCAACAAGGATTCTTGGGGGACAAGGTTACTCCTCCTACGAGCCAAACTTCTTCCAAGTCTTTGACGTGAAGTATCCGTGTTCTTTTCCTGCAAGCTCTCACAAGAGGGGTTTTCATGCTATAAATTTTGATACATCAAAGCTTGGAGTGAAGCATAGTTGGCCTCCCCGTGATCTTGTAGAGGTTTTCGTAATTGGATTGTTCAAAAGTACCAGAGCAAACCGTCATCTACCGAGAGGAAGTTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003676 GO:0003723 GO:0003824 GO:0004652 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005829 GO:0006139 GO:0006276 GO:0006378 GO:0006396 GO:0006397 GO:0006725 GO:0006807 GO:0008150 GO:0008152 GO:0009451 GO:0009987 GO:0010467 GO:0016070 GO:0016071 GO:0016740 GO:0016772 GO:0016779 GO:0031123 GO:0031124 GO:0034641 GO:0043170 GO:0043412 GO:0043631 GO:0044237 GO:0044238 GO:0044424 GO:0044444 GO:0044464 GO:0046483 GO:0070566 GO:0071704 GO:0090304 GO:0097159 GO:1901360 GO:1901363

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

PolyA_pol PolyA_pol_RNAbd

Protein Analysis

255

Amino Acids

29.52

Weight (kDa)

6.66

Isoelectric Point (pI)

38.48

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0000314)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_1g02272 FvH4_1g22661 FvH4_2g10242 FvH4_2g34051 FvH4_3g19221 FvH4_3g29651 FvH4_3g30891 FvH4_4g11061 FvH4_5g09250 FvH4_5g15302 FvH4_5g15303 FvH4_5g15304 FvH4_5g28521 FvH4_6g23591 FvH4_7g05710 FvH4_7g19520
pyrus_communis	pycom07g06330
rosa_chinensis	RchiOBHm_Chr5g0027301 RchiOBHm_Chr6g0251451 RchiOBHm_Chr6g0274861
rosa_laevigata	RLG00000007850
rosa_multiflora	Rmu_co8230721.1_g000001 Rmu_sc0000271.1_g000027 Rmu_sc0000303.1_g000024 Rmu_sc0000368.1_g000024 Rmu_sc0000621.1_g000037 Rmu_sc0000693.1_g000081 Rmu_sc0001229.1_g000006 Rmu_sc0001373.1_g000003 Rmu_sc0001459.1_g000001 Rmu_sc0001744.1_g000002 Rmu_sc0001909.1_g000002 Rmu_sc0002053.1_g000012 Rmu_sc0002060.1_g000015 Rmu_sc0002119.1_g000036 Rmu_sc0002177.1_g000007 Rmu_sc0002822.1_g000024 Rmu_sc0002965.1_g000015 Rmu_sc0003363.1_g000051 Rmu_sc0003500.1_g000013 Rmu_sc0004191.1_g000020 Rmu_sc0004904.1_g000032 Rmu_sc0005325.1_g000008 Rmu_sc0005947.1_g000040 Rmu_sc0006475.1_g000001 Rmu_sc0006522.1_g000019 Rmu_sc0007102.1_g000005 Rmu_sc0007810.1_g000003 Rmu_sc0008339.1_g000025 Rmu_sc0008698.1_g000004 Rmu_sc0009313.1_g000006 Rmu_sc0009850.1_g000006 Rmu_sc0010598.1_g000003 Rmu_sc0011162.1_g000002 Rmu_sc0011824.1_g000004 Rmu_sc0011900.1_g000010 Rmu_sc0012291.1_g000006 Rmu_sc0012619.1_g000003 Rmu_sc0014679.1_g000001 Rmu_sc0019053.1_g000001 Rmu_sc0021462.1_g000003 Rmu_sc0024172.1_g000001 Rmu_sc0024173.1_g000001 Rmu_ssc0000052.1_g000016 Rmu_ssc0000392.1_g000010 Rmu_ssc0000421.1_g000062 Rmu_ssc0000479.1_g000006
rosa_roxburghii	Rroxscaffold_153G00436600 Rroxscaffold_1G00008580 Rroxscaffold_1G00016770 Rroxscaffold_1G00029550 Rroxscaffold_1G00036450 Rroxscaffold_1G00040410 Rroxscaffold_1G00047110 Rroxscaffold_1G00060570 Rroxscaffold_2G00081500 Rroxscaffold_2G00081510 Rroxscaffold_2G00086080 Rroxscaffold_2G00099620 Rroxscaffold_2G00099630 Rroxscaffold_2G00099640 Rroxscaffold_2G00109170 Rroxscaffold_2G00127750 Rroxscaffold_2G00128590 Rroxscaffold_2G00130780 Rroxscaffold_2G00131040 Rroxscaffold_2G00143160 Rroxscaffold_3G00229280 Rroxscaffold_3G00229290 Rroxscaffold_3G00229970 Rroxscaffold_3G00242860 Rroxscaffold_3G00242890 Rroxscaffold_3G00242900 Rroxscaffold_3G00248200 Rroxscaffold_4G00284550 Rroxscaffold_4G00288780 Rroxscaffold_4G00298620 Rroxscaffold_4G00298630 Rroxscaffold_4G00312420 Rroxscaffold_4G00320310 Rroxscaffold_4G00322220 Rroxscaffold_4G00323600 Rroxscaffold_4G00331830 Rroxscaffold_4G00332010 Rroxscaffold_4G00332020 Rroxscaffold_5G00344470 Rroxscaffold_5G00345310 Rroxscaffold_5G00356120 Rroxscaffold_5G00368700 Rroxscaffold_5G00379820 Rroxscaffold_5G00382480 Rroxscaffold_6G00395080 Rroxscaffold_6G00405520 Rroxscaffold_6G00428210 Rroxscaffold_7G00193460
rosa_samantha	Rh7CG413200 Rh7DG284900

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB1I	GGYRCC	1 cut(s)	75
AccB7I	CCANNNNNTGG	3 cut(s)	248, 391, 415
AciI	CCGC	1 cut(s)	275
AcsI	RAATTY	4 cut(s)	109, 125, 376, 646
AcyI	GRCGYC	1 cut(s)	161
AdeI	CACNNNGTG	1 cut(s)	16
AfaI	GTAC	2 cut(s)	142, 733
AfiI	CCNNNNNNNGG	3 cut(s)	248, 391, 415
AgsI	TTSAA	4 cut(s)	349, 359, 505, 727
AjiI	CACGTC	1 cut(s)	589
AjnI	CCWGG	1 cut(s)	12
AjuI	GAANNNNNNNTTGG	2 cut(s)	54, 86
AloI	GAACNNNNNNTCC	2 cut(s)	335, 367
AluBI	AGCT	3 cut(s)	362, 618, 664
AluI	AGCT	3 cut(s)	362, 618, 664
Alw26I	GTCTC	1 cut(s)	168
AoxI	GGCC	1 cut(s)	683
ApoI	RAATTY	4 cut(s)	109, 125, 376, 646
Asp700I	GAANNNNTTC	2 cut(s)	66, 344
AspS9I	GGNCC	1 cut(s)	382
AsuC2I	CCSGG	1 cut(s)	178
AsuHPI	GGTGA	5 cut(s)	28, 46, 231, 263, 311
AvaII	GGWCC	1 cut(s)	382
BanI	GGYRCC	1 cut(s)	75
BccI	CCATC	1 cut(s)	131
BciT130I	CCWGG	1 cut(s)	14
BciVI	GTATCC	1 cut(s)	606
BcnI	CCSGG	1 cut(s)	178
BcoDI	GTCTC	1 cut(s)	168
BfuI	GTATCC	1 cut(s)	606
Bme1390I	CCNGG	2 cut(s)	14, 178
Bme18I	GGWCC	1 cut(s)	382
BmgBI	CACGTC	1 cut(s)	589
BmgT120I	GGNCC	1 cut(s)	382
BmiI	GGNNCC	3 cut(s)	77, 279, 325
BmrFI	CCNGG	2 cut(s)	14, 178
BmsI	GCATC	2 cut(s)	163, 262
BpuMI	CCSGG	1 cut(s)	178
Bsa29I	ATCGAT	1 cut(s)	54
BsaHI	GRCGYC	1 cut(s)	161
BsaXI	ACNNNNNCTCC	2 cut(s)	335, 365
Bsc4I	CCNNNNNNNGG	3 cut(s)	248, 391, 415
BseBI	CCWGG	1 cut(s)	14
BseCI	ATCGAT	1 cut(s)	54
BseGI	GGATG	1 cut(s)	479
BseLI	CCNNNNNNNGG	3 cut(s)	248, 391, 415
BseRI	GAGGAG	1 cut(s)	544
Bsh1285I	CGRYCG	1 cut(s)	54
BshFI	GGCC	1 cut(s)	685
BshNI	GGYRCC	1 cut(s)	75
BshVI	ATCGAT	1 cut(s)	54
BsiEI	CGRYCG	1 cut(s)	54
BsiSI	CCGG	1 cut(s)	178
BslFI	GGGAC	1 cut(s)	555
BslI	CCNNNNNNNGG	3 cut(s)	248, 391, 415
BsmAI	GTCTC	1 cut(s)	168
BsmBI	CGTCTC	1 cut(s)	168
BsmFI	GGGAC	1 cut(s)	555
BsmI	GAATGC	1 cut(s)	404
BsnI	GGCC	1 cut(s)	685
Bsp143I	GATC	5 cut(s)	51, 231, 265, 507, 694
BspACI	CCGC	1 cut(s)	275
BspANI	GGCC	1 cut(s)	685
BspDI	ATCGAT	1 cut(s)	54
BspLI	GGNNCC	3 cut(s)	77, 279, 325
BspT107I	GGYRCC	1 cut(s)	75
BssMI	GATC	5 cut(s)	51, 231, 265, 507, 694
BssNI	GRCGYC	1 cut(s)	161
Bst2UI	CCWGG	1 cut(s)	14
Bst4CI	ACNGT	1 cut(s)	746
Bst6I	CTCTTC	1 cut(s)	222
BstACI	GRCGYC	1 cut(s)	161
BstC8I	GCNNGC	1 cut(s)	616
BstDEI	CTNAG	1 cut(s)	92
BstF5I	GGATG	1 cut(s)	479
BstKTI	GATC	5 cut(s)	54, 234, 268, 510, 697
BstMAI	GTCTC	1 cut(s)	168
BstMBI	GATC	5 cut(s)	51, 231, 265, 507, 694
BstMCI	CGRYCG	1 cut(s)	54
BstMWI	GCNNNNNNNGC	1 cut(s)	682
BstNI	CCWGG	1 cut(s)	14
BstSCI	CCNGG	2 cut(s)	12, 176
Bsu15I	ATCGAT	1 cut(s)	54
BsuI	GTATCC	1 cut(s)	606
BsuRI	GGCC	1 cut(s)	685
BsuTUI	ATCGAT	1 cut(s)	54
BtrI	CACGTC	1 cut(s)	589
BtsCI	GGATG	1 cut(s)	479
Cac8I	GCNNGC	1 cut(s)	616
Cfr13I	GGNCC	1 cut(s)	382
ClaI	ATCGAT	1 cut(s)	54
CseI	GACGC	1 cut(s)	150
CsiI	ACCWGGT	1 cut(s)	12
Csp6I	GTAC	2 cut(s)	141, 732
CviAII	CATG	3 cut(s)	436, 511, 638
CviJI	RGCY	9 cut(s)	280, 362, 408, 419, 467, 565, 618, 664, 685
CviKI_1	RGCY	9 cut(s)	280, 362, 408, 419, 467, 565, 618, 664, 685
CviQI	GTAC	2 cut(s)	141, 732
DdeI	CTNAG	1 cut(s)	92
DpnI	GATC	5 cut(s)	53, 233, 267, 509, 696
DpnII	GATC	5 cut(s)	51, 231, 265, 507, 694
DraI	TTTAAA	1 cut(s)	223
DraIII	CACNNNGTG	1 cut(s)	16
Eam1104I	CTCTTC	1 cut(s)	222
EarI	CTCTTC	1 cut(s)	222
Eco47I	GGWCC	1 cut(s)	382
EcoRI	GAATTC	1 cut(s)	376
EcoRII	CCWGG	1 cut(s)	12
Esp3I	CGTCTC	1 cut(s)	168
FaeI	CATG	3 cut(s)	439, 514, 641
FaqI	GGGAC	1 cut(s)	555
FatI	CATG	3 cut(s)	435, 510, 637
FauNDI	CATATG	1 cut(s)	336
FokI	GGATG	1 cut(s)	466
HaeIII	GGCC	1 cut(s)	685
HapII	CCGG	1 cut(s)	178
HgaI	GACGC	1 cut(s)	150
Hin1I	GRCGYC	1 cut(s)	161
Hin1II	CATG	3 cut(s)	439, 514, 641
HindIII	AAGCTT	1 cut(s)	662
HinfI	GANTC	2 cut(s)	254, 532
HpaII	CCGG	1 cut(s)	178
HphI	GGTGA	5 cut(s)	28, 46, 231, 263, 311
Hpy166II	GTNNAC	1 cut(s)	10
Hpy188I	TCNGA	1 cut(s)	382
Hpy188III	TCNNGA	2 cut(s)	269, 365
Hpy8I	GTNNAC	1 cut(s)	10
HpyAV	CCTTC	1 cut(s)	334
HpyCH4III	ACNGT	1 cut(s)	746
HpyCH4IV	ACGT	1 cut(s)	588
HpyCH4V	TGCA	3 cut(s)	402, 499, 614
HpyF10VI	GCNNNNNNNGC	1 cut(s)	682
HpyF3I	CTNAG	1 cut(s)	92
HpySE526I	ACGT	1 cut(s)	588
Hsp92I	GRCGYC	1 cut(s)	161
Hsp92II	CATG	3 cut(s)	439, 514, 641
Kzo9I	GATC	5 cut(s)	51, 231, 265, 507, 694
LmnI	GCTCC	1 cut(s)	277
LpnPI	CCDG	5 cut(s)	26, 191, 398, 624, 748
LweI	GCATC	2 cut(s)	163, 262
MabI	ACCWGGT	1 cut(s)	12
MaeII	ACGT	1 cut(s)	588
MaeIII	GTNAC	2 cut(s)	251, 548
MalI	GATC	5 cut(s)	53, 233, 267, 509, 696
MboI	GATC	5 cut(s)	51, 231, 265, 507, 694
MboII	GAAGA	3 cut(s)	239, 517, 565
MfeI	CAATTG	1 cut(s)	500
MlyI	GAGTC	1 cut(s)	248
MnlI	CCTC	8 cut(s)	58, 151, 185, 565, 621, 696, 697, 752
MroXI	GAANNNNTTC	2 cut(s)	66, 344
MseI	TTAA	1 cut(s)	222
MspI	CCGG	1 cut(s)	178
MspR9I	CCNGG	2 cut(s)	14, 178
MunI	CAATTG	1 cut(s)	500
Mva1269I	GAATGC	1 cut(s)	404
MvaI	CCWGG	1 cut(s)	14
MwoI	GCNNNNNNNGC	1 cut(s)	682
NciI	CCSGG	1 cut(s)	178
NdeI	CATATG	1 cut(s)	336
NdeII	GATC	5 cut(s)	51, 231, 265, 507, 694
NlaIII	CATG	3 cut(s)	439, 514, 641
NlaIV	GGNNCC	3 cut(s)	77, 279, 325
NmuCI	GTSAC	1 cut(s)	251
PctI	GAATGC	1 cut(s)	404
PdmI	GAANNNNTTC	2 cut(s)	66, 344
PfeI	GAWTC	1 cut(s)	532
PflMI	CCANNNNNTGG	3 cut(s)	248, 391, 415
Ple19I	CGATCG	1 cut(s)	54
PleI	GAGTC	1 cut(s)	248
PpsI	GAGTC	1 cut(s)	248
Psp6I	CCWGG	1 cut(s)	12
PspGI	CCWGG	1 cut(s)	12
PspN4I	GGNNCC	3 cut(s)	77, 279, 325
PspPI	GGNCC	1 cut(s)	382
PvuI	CGATCG	1 cut(s)	54
RsaI	GTAC	2 cut(s)	142, 733
RsaNI	GTAC	2 cut(s)	141, 732
SaqAI	TTAA	1 cut(s)	222
Sau3AI	GATC	5 cut(s)	51, 231, 265, 507, 694
Sau96I	GGNCC	1 cut(s)	382
SchI	GAGTC	1 cut(s)	248
ScrFI	CCNGG	2 cut(s)	14, 178
SetI	ASST	7 cut(s)	18, 364, 550, 591, 620, 666, 708
SexAI	ACCWGGT	1 cut(s)	12
SfaNI	GCATC	2 cut(s)	163, 262
SinI	GGWCC	1 cut(s)	382
SsiI	CCGC	1 cut(s)	275
SspI	AATATT	1 cut(s)	204
StyD4I	CCNGG	2 cut(s)	12, 176
TaaI	ACNGT	1 cut(s)	746
TaiI	ACGT	1 cut(s)	591
TaqI	TCGA	6 cut(s)	50, 54, 84, 100, 270, 396
TfiI	GAWTC	1 cut(s)	532
Tru1I	TTAA	1 cut(s)	222
Tru9I	TTAA	1 cut(s)	222
TseFI	GTSAC	1 cut(s)	251
Tsp45I	GTSAC	1 cut(s)	251
TspDTI	ATGAA	6 cut(s)	30, 75, 306, 353, 468, 626
TspGWI	ACGGA	2 cut(s)	386, 588
Van91I	CCANNNNNTGG	3 cut(s)	248, 391, 415
VpaK11BI	GGWCC	1 cut(s)	382
XapI	RAATTY	4 cut(s)	109, 125, 376, 646
XmnI	GAANNNNTTC	2 cut(s)	66, 344

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.