Basic Information

Type: gene

Biological Identity

Species

rosa_roxburghii

Chromosome

GWHEROQ00000005

Orthogroup ID

OG0000314

Physical Location & Seq

Genomic Coordinates Reverse (-)

60048802 .. 60054187

Gene Structure 5386 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Rroxscaffold_5G00379820.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1899 bp

ATGGAGTCGATGGAGTGGTCCGGTGTTGGATTGGCGGCGCAATGGCCGGGGTCGAGGACAAGGTCTGGTCCGGGTGCCCAGAGAGATTTTAGGTGCCCATCCGTGGATATGGACCCGGGCTTCTTTTTGTTTGGGCTATTCAAGATGGGTCTTTGTTTGGACGCTTCCAAGACATCTACAAAGCCATTATCCAAAGGCACCGATTCGGATGTCGAAGATGCATCCAAGACTTCTACAAAGTCATCGACAAAACCATCATCCAAAGGTGTTGGTTCTGATAATGAAGATGCATCCAAGACCTCTACAAAGTCATCCACAAAGCCGTCAACCAAAGGTGCCGATTCGGATGCTGCAGACGCATCCAAGACCTCTACGAAGTCATCGACAAAACCGTCATCCAAAGGTGCCGATTTAGATGCCGAAGACGCATCCAAGATGTCTACAAAGTCATCGACAAAACCACCATCCAAAGGTGCCGCTTCGGATGCCGAAGACGCATCTAAGACGTCTACAAAGTCATCGACAAAACCATCATCCAAAGGTGCCGCTTCGATGCCGAAAACCCATCCAAGACCTCTACAAAGTCATCAACAAAGCTGTCATCCAAAAGTGCCGATTCGGATGCCGAAGACGCATCCAAGGCGTCTACAAAGTCATCGCCAAAACCATCATCCAAAGGTGCTAATTCGGATAATGAAGATGCATCCAAGACATCTACAAAGTCATCGACAAAGCCATCATCCAAAGGAGCTGGTTCGGATAATGAAGATGGTCAAACCAAGATGTCCACAAAGTCATCGACAAAACCATCCTCCAAAGGTACCGGTTCGGATGATGAAGCCAAGACATCCACAAAGTCATCAACAAAGCCGTCATCTCGTGGCGCTAAAGATACCGCAAAGTCAACAAAGAAAGTCGTCATCCGGCGGTGGTGGTAAGGAGTCGACAAAGTCGAAATCGGTGAGAAGAAAGGTGCAAGTCGTCGTGAGGGGCCCACTCGAGAATAAGGACGAGGTGCCATCGACTAAAGAGATCATGAGCAGCGCGAAGTTGGTGGCGTCGGCGGCGCAGGGGGAGAATGTGGAGAAGACCGAGTTAGCGGGGCCGCGAGCAACCTTCTCGGCGCAGCCAATCACTACGGCAAGCTTCGAGCAATCGGGGTTTGGCAAGTATCCGGATAAGGCCGAGGATATGCTCCGTAAGATGGCCAAGAAGTCCGATTCGAGTCCCAAGACCGGTGACGATAAGACTAAGAAGTCTAGCGCCGGTGACAAGAAGACTAAGAAGTCCGGCGCGGTGACAAGAAGACTAAGAAGTCTAGTGCTAATGACGGTGAAGGTGATGAGGACAAGCCGAAGAAAAAATCGAGAAGAAGCCACCGCCAAAGATGATGAGGAAGAAGGTGGTGGTGGTGGGTTTGGAGATATCTTGAAGATGGCTAAAGGTTTCTTGAAGGAGGCATCTCAATATGATGCCTGGAAAGAAAATAGAGGCAAACAAATATATGCTATGCCTATTTTCGAAGAAGAGATCAATTCACCACCCTTTGGTGACTCTAAATATGATCTCAATGCAGAGCCAATCTATGATGAATATGATGAATATGATGATTATTATAATTTAATTATTGGTTCCAAGAATCATATGCAGGAGTTCAAGTCCTTTGAAGCTCTTGATATGGAGAATTTAGACCAACAAGTGGTCAAATATAATAGCCAATCCGTAGCTTATTCTAGAGAGGCCATGTTCTATGACATGGTGGTTGGCGACAAAACCGATCGTGGAACACCGTCATCTCCAAAATTGCAATTGAAGGTCATGCTCCGTCAACCAACAAAGATACTTGGGGGCAATATTACTCCTCATATGAGCCAAATTTCTTCCAAGTCGTCGATATGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003676 GO:0003723 GO:0003824 GO:0004652 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005829 GO:0006139 GO:0006276 GO:0006378 GO:0006396 GO:0006397 GO:0006725 GO:0006807 GO:0008150 GO:0008152 GO:0009451 GO:0009987 GO:0010467 GO:0016070 GO:0016071 GO:0016740 GO:0016772 GO:0016779 GO:0031123 GO:0031124 GO:0034641 GO:0043170 GO:0043412 GO:0043631 GO:0044237 GO:0044238 GO:0044424 GO:0044444 GO:0044464 GO:0046483 GO:0070566 GO:0071704 GO:0090304 GO:0097159 GO:1901360 GO:1901363

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

PolyA_pol PolyA_pol_RNAbd

Protein Analysis

632

Amino Acids

69.56

Weight (kDa)

9.78

Isoelectric Point (pI)

59.91

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0000314)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_1g02272 FvH4_1g22661 FvH4_2g10242 FvH4_2g34051 FvH4_3g19221 FvH4_3g29651 FvH4_3g30891 FvH4_4g11061 FvH4_5g09250 FvH4_5g15302 FvH4_5g15303 FvH4_5g15304 FvH4_5g28521 FvH4_6g23591 FvH4_7g05710 FvH4_7g19520
pyrus_communis	pycom07g06330
rosa_chinensis	RchiOBHm_Chr5g0027301 RchiOBHm_Chr6g0251451 RchiOBHm_Chr6g0274861
rosa_laevigata	RLG00000007850
rosa_multiflora	Rmu_co8230721.1_g000001 Rmu_sc0000271.1_g000027 Rmu_sc0000303.1_g000024 Rmu_sc0000368.1_g000024 Rmu_sc0000621.1_g000037 Rmu_sc0000693.1_g000081 Rmu_sc0001229.1_g000006 Rmu_sc0001373.1_g000003 Rmu_sc0001459.1_g000001 Rmu_sc0001744.1_g000002 Rmu_sc0001909.1_g000002 Rmu_sc0002053.1_g000012 Rmu_sc0002060.1_g000015 Rmu_sc0002119.1_g000036 Rmu_sc0002177.1_g000007 Rmu_sc0002822.1_g000024 Rmu_sc0002965.1_g000015 Rmu_sc0003363.1_g000051 Rmu_sc0003500.1_g000013 Rmu_sc0004191.1_g000020 Rmu_sc0004904.1_g000032 Rmu_sc0005325.1_g000008 Rmu_sc0005947.1_g000040 Rmu_sc0006475.1_g000001 Rmu_sc0006522.1_g000019 Rmu_sc0007102.1_g000005 Rmu_sc0007810.1_g000003 Rmu_sc0008339.1_g000025 Rmu_sc0008698.1_g000004 Rmu_sc0009313.1_g000006 Rmu_sc0009850.1_g000006 Rmu_sc0010598.1_g000003 Rmu_sc0011162.1_g000002 Rmu_sc0011824.1_g000004 Rmu_sc0011900.1_g000010 Rmu_sc0012291.1_g000006 Rmu_sc0012619.1_g000003 Rmu_sc0014679.1_g000001 Rmu_sc0019053.1_g000001 Rmu_sc0021462.1_g000003 Rmu_sc0024172.1_g000001 Rmu_sc0024173.1_g000001 Rmu_ssc0000052.1_g000016 Rmu_ssc0000392.1_g000010 Rmu_ssc0000421.1_g000062 Rmu_ssc0000479.1_g000006
rosa_roxburghii	Rroxscaffold_153G00436600 Rroxscaffold_1G00008580 Rroxscaffold_1G00016770 Rroxscaffold_1G00029550 Rroxscaffold_1G00036450 Rroxscaffold_1G00040410 Rroxscaffold_1G00047110 Rroxscaffold_1G00060570 Rroxscaffold_2G00081500 Rroxscaffold_2G00081510 Rroxscaffold_2G00086080 Rroxscaffold_2G00099620 Rroxscaffold_2G00099630 Rroxscaffold_2G00099640 Rroxscaffold_2G00109170 Rroxscaffold_2G00127750 Rroxscaffold_2G00128590 Rroxscaffold_2G00130780 Rroxscaffold_2G00131040 Rroxscaffold_2G00143160 Rroxscaffold_3G00229280 Rroxscaffold_3G00229290 Rroxscaffold_3G00229970 Rroxscaffold_3G00242860 Rroxscaffold_3G00242890 Rroxscaffold_3G00242900 Rroxscaffold_3G00248200 Rroxscaffold_4G00284550 Rroxscaffold_4G00288780 Rroxscaffold_4G00298620 Rroxscaffold_4G00298630 Rroxscaffold_4G00312420 Rroxscaffold_4G00320310 Rroxscaffold_4G00322220 Rroxscaffold_4G00323600 Rroxscaffold_4G00331830 Rroxscaffold_4G00332010 Rroxscaffold_4G00332020 Rroxscaffold_5G00344470 Rroxscaffold_5G00345310 Rroxscaffold_5G00356120 Rroxscaffold_5G00368700 Rroxscaffold_5G00379820 Rroxscaffold_5G00382480 Rroxscaffold_6G00395080 Rroxscaffold_6G00405520 Rroxscaffold_6G00428210 Rroxscaffold_7G00193460
rosa_samantha	Rh7CG413200 Rh7DG284900

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	1 cut(s)	1617
AasI	GACNNNNNNGTC	4 cut(s)	391, 1255, 1285, 1314
AatII	GACGTC	1 cut(s)	509
Acc65I	GGTACC	1 cut(s)	820
AccB1I	GGYRCC	9 cut(s)	74, 93, 197, 335, 404, 473, 542, 820, 1015
AccB7I	CCANNNNNTGG	2 cut(s)	1547, 1699
AccI	GTMKAC	4 cut(s)	440, 509, 646, 944
AccII	CGCG	3 cut(s)	1046, 1108, 1295
AccIII	TCCGGA	1 cut(s)	1174
AcoI	YGGCCR	2 cut(s)	44, 1206
AcsI	RAATTY	2 cut(s)	1684, 1875
AcyI	GRCGYC	3 cut(s)	506, 643, 1058
AfaI	GTAC	1 cut(s)	822
AfiI	CCNNNNNNNGG	6 cut(s)	103, 470, 1204, 1235, 1547, 1699
AgeI	ACCGGT	2 cut(s)	823, 1235
AgsI	TTSAA	6 cut(s)	142, 1432, 1453, 1657, 1667, 1813
AjnI	CCWGG	1 cut(s)	1475
AluBI	AGCT	5 cut(s)	597, 751, 1146, 1670, 1727
AluI	AGCT	5 cut(s)	597, 751, 1146, 1670, 1727
Ama87I	CYCGRG	2 cut(s)	115, 998
Aor13HI	TCCGGA	1 cut(s)	1174
AoxI	GGCC	6 cut(s)	44, 991, 1103, 1182, 1206, 1740
ApaI	GGGCCC	1 cut(s)	995
ApeKI	GCWGC	3 cut(s)	350, 1041, 1126
ApoI	RAATTY	2 cut(s)	1684, 1875
AsiGI	ACCGGT	2 cut(s)	823, 1235
Asp718I	GGTACC	1 cut(s)	820
AspLEI	GCGC	7 cut(s)	40, 886, 1046, 1069, 1126, 1265, 1295
AspS9I	GGNCC	6 cut(s)	18, 68, 112, 991, 992, 1103
AsuC2I	CCSGG	4 cut(s)	48, 72, 116, 117
AsuHPI	GGTGA	8 cut(s)	973, 1250, 1280, 1309, 1345, 1351, 1530, 1562
AsuII	TTCGAA	1 cut(s)	1521
AvaI	CYCGRG	2 cut(s)	115, 998
AvaII	GGWCC	3 cut(s)	18, 68, 112
BaeGI	GKGCMC	3 cut(s)	79, 98, 995
BalI	TGGCCA	1 cut(s)	1208
BanI	GGYRCC	9 cut(s)	74, 93, 197, 335, 404, 473, 542, 820, 1015
BanII	GRGCYC	1 cut(s)	995
BauI	CACGAG	1 cut(s)	878
BbsI	GAAGAC	6 cut(s)	429, 498, 635, 1094, 1283, 1312
BbvI	GCAGC	3 cut(s)	337, 1053, 1138
BceAI	ACGGC	3 cut(s)	307, 855, 1155
BcgI	CGANNNNNNTGC	8 cut(s)	329, 363, 398, 432, 604, 638, 1101, 1135
BciT130I	CCWGG	1 cut(s)	1477
BciVI	GTATCC	1 cut(s)	1182
BcnI	CCSGG	4 cut(s)	48, 72, 116, 117
BfaI	CTAG	3 cut(s)	1260, 1319, 1734
BfmI	CTRYAG	1 cut(s)	351
BfoI	RGCGCY	2 cut(s)	887, 1266
BfuI	GTATCC	1 cut(s)	1182
BisI	GCNGC	8 cut(s)	36, 351, 477, 546, 1042, 1065, 1106, 1127
BlsI	GCNGC	8 cut(s)	37, 352, 478, 547, 1043, 1066, 1107, 1128
Bme1390I	CCNGG	5 cut(s)	48, 72, 116, 117, 1477
Bme18I	GGWCC	3 cut(s)	18, 68, 112
BmeT110I	CYCGRG	2 cut(s)	115, 998
BmgT120I	GGNCC	6 cut(s)	18, 68, 112, 991, 992, 1103
BmrFI	CCNGG	5 cut(s)	48, 72, 116, 117, 1477
BpiI	GAAGAC	6 cut(s)	429, 498, 635, 1094, 1283, 1312
Bpu14I	TTCGAA	1 cut(s)	1521
BpuMI	CCSGG	4 cut(s)	48, 72, 116, 117
BsaHI	GRCGYC	3 cut(s)	506, 643, 1058
BsaJI	CCNNGG	5 cut(s)	47, 102, 115, 638, 1185
BsaWI	WCCGGW	4 cut(s)	20, 823, 1174, 1235
BsaXI	ACNNNNNCTCC	2 cut(s)	1643, 1673
Bsc4I	CCNNNNNNNGG	6 cut(s)	103, 470, 1204, 1235, 1547, 1699
Bse118I	RCCGGY	3 cut(s)	823, 1235, 1265
Bse3DI	GCAATG	1 cut(s)	47
BseAI	TCCGGA	1 cut(s)	1174
BseBI	CCWGG	1 cut(s)	1477
BseDI	CCNNGG	5 cut(s)	47, 102, 115, 638, 1185
BseLI	CCNNNNNNNGG	6 cut(s)	103, 470, 1204, 1235, 1547, 1699
BseMI	GCAATG	1 cut(s)	47
BseRI	GAGGAG	1 cut(s)	1851
BseSI	GKGCMC	3 cut(s)	79, 98, 995
BseXI	GCAGC	3 cut(s)	337, 1053, 1138
Bsh1236I	CGCG	3 cut(s)	1046, 1108, 1295
Bsh1285I	CGRYCG	1 cut(s)	1780
BshFI	GGCC	6 cut(s)	46, 993, 1105, 1184, 1208, 1742
BshNI	GGYRCC	9 cut(s)	74, 93, 197, 335, 404, 473, 542, 820, 1015
BshTI	ACCGGT	2 cut(s)	823, 1235
BsiEI	CGRYCG	1 cut(s)	1780
BsiHKCI	CYCGRG	2 cut(s)	115, 998
BslFI	GGGAC	1 cut(s)	1212
BslI	CCNNNNNNNGG	6 cut(s)	103, 470, 1204, 1235, 1547, 1699
BsmFI	GGGAC	1 cut(s)	1212
BsnI	GGCC	6 cut(s)	46, 993, 1105, 1184, 1208, 1742
BsoBI	CYCGRG	2 cut(s)	115, 998
Bsp119I	TTCGAA	1 cut(s)	1521
Bsp120I	GGGCCC	1 cut(s)	991
Bsp1286I	GDGCHC	3 cut(s)	79, 98, 995
Bsp13I	TCCGGA	1 cut(s)	1174
Bsp143I	GATC	4 cut(s)	1032, 1530, 1564, 1777
BspANI	GGCC	6 cut(s)	46, 993, 1105, 1184, 1208, 1742
BspEI	TCCGGA	1 cut(s)	1174
BspFNI	CGCG	3 cut(s)	1046, 1108, 1295
BspHI	TCATGA	1 cut(s)	1035
BspMAI	CTGCAG	1 cut(s)	355
BspT104I	TTCGAA	1 cut(s)	1521
BspT107I	GGYRCC	9 cut(s)	74, 93, 197, 335, 404, 473, 542, 820, 1015
BsrDI	GCAATG	1 cut(s)	47
BsrFI	RCCGGY	3 cut(s)	823, 1235, 1265
BssAI	RCCGGY	3 cut(s)	823, 1235, 1265
BssECI	CCNNGG	5 cut(s)	47, 102, 115, 638, 1185
BssMI	GATC	4 cut(s)	1032, 1530, 1564, 1777
BssNI	GRCGYC	3 cut(s)	506, 643, 1058
BssSI	CACGAG	1 cut(s)	878
BssT1I	CCWWGG	1 cut(s)	638
Bst2BI	CACGAG	1 cut(s)	878
Bst2UI	CCWGG	1 cut(s)	1477
Bst4CI	ACNGT	3 cut(s)	393, 1333, 1791
Bst6I	CTCTTC	1 cut(s)	1521
BstACI	GRCGYC	3 cut(s)	506, 643, 1058
BstBI	TTCGAA	1 cut(s)	1521
BstC8I	GCNNGC	2 cut(s)	1110, 1144
BstDEI	CTNAG	4 cut(s)	501, 1251, 1281, 1310
BstDSI	CCRYGG	1 cut(s)	102
BstFNI	CGCG	3 cut(s)	1046, 1108, 1295
BstH2I	RGCGCY	2 cut(s)	887, 1266
BstHHI	GCGC	7 cut(s)	40, 886, 1046, 1069, 1126, 1265, 1295
BstKTI	GATC	4 cut(s)	1035, 1533, 1567, 1780
BstMBI	GATC	4 cut(s)	1032, 1530, 1564, 1777
BstMCI	CGRYCG	1 cut(s)	1780
BstMWI	GCNNNNNNNGC	7 cut(s)	356, 425, 485, 494, 631, 640, 1064
BstNI	CCWGG	1 cut(s)	1477
BstSCI	CCNGG	5 cut(s)	46, 70, 114, 115, 1475
BstSFI	CTRYAG	1 cut(s)	351
BstSLI	GKGCMC	3 cut(s)	79, 98, 995
BstUI	CGCG	3 cut(s)	1046, 1108, 1295
BstV1I	GCAGC	3 cut(s)	337, 1053, 1138
BstV2I	GAAGAC	6 cut(s)	429, 498, 635, 1094, 1283, 1312
BsuI	GTATCC	1 cut(s)	1182
BsuRI	GGCC	6 cut(s)	46, 993, 1105, 1184, 1208, 1742
BtgI	CCRYGG	1 cut(s)	102
BtgZI	GCGATG	1 cut(s)	641
Cac8I	GCNNGC	2 cut(s)	1110, 1144
CciI	TCATGA	1 cut(s)	1035
CfoI	GCGC	7 cut(s)	40, 886, 1046, 1069, 1126, 1265, 1295
Cfr10I	RCCGGY	3 cut(s)	823, 1235, 1265
Cfr13I	GGNCC	6 cut(s)	18, 68, 112, 991, 992, 1103
Cfr9I	CCCGGG	1 cut(s)	115
CseI	GACGC	7 cut(s)	170, 365, 434, 503, 632, 640, 1047
Csp6I	GTAC	1 cut(s)	821
CspAI	ACCGGT	2 cut(s)	823, 1235
CviAII	CATG	4 cut(s)	1036, 1744, 1756, 1819
CviQI	GTAC	1 cut(s)	821
DdeI	CTNAG	4 cut(s)	501, 1251, 1281, 1310
DpnI	GATC	4 cut(s)	1034, 1532, 1566, 1779
DpnII	GATC	4 cut(s)	1032, 1530, 1564, 1777
DrdI	GACNNNNNNGTC	4 cut(s)	391, 1255, 1285, 1314
DseDI	GACNNNNNNGTC	4 cut(s)	391, 1255, 1285, 1314
EaeI	YGGCCR	2 cut(s)	44, 1206
Eam1104I	CTCTTC	1 cut(s)	1521
EarI	CTCTTC	1 cut(s)	1521
Eco130I	CCWWGG	1 cut(s)	638
Eco24I	GRGCYC	1 cut(s)	995
Eco32I	GATATC	1 cut(s)	1426
Eco47I	GGWCC	3 cut(s)	18, 68, 112
Eco88I	CYCGRG	2 cut(s)	115, 998
EcoO109I	RGGNCCY	1 cut(s)	991
EcoRII	CCWGG	1 cut(s)	1475
EcoRV	GATATC	1 cut(s)	1426
EcoT14I	CCWWGG	1 cut(s)	638
EcoT22I	ATGCAT	3 cut(s)	223, 292, 705
EcoT38I	GRGCYC	1 cut(s)	995
ErhI	CCWWGG	1 cut(s)	638
FaeI	CATG	4 cut(s)	1039, 1747, 1759, 1822
FaqI	GGGAC	1 cut(s)	1212
FatI	CATG	4 cut(s)	1035, 1743, 1755, 1818
FauI	CCCGC	1 cut(s)	1093
FauNDI	CATATG	2 cut(s)	1644, 1866
FblI	GTMKAC	4 cut(s)	440, 509, 646, 944
Fnu4HI	GCNGC	8 cut(s)	36, 351, 477, 546, 1042, 1065, 1106, 1127
FriOI	GRGCYC	1 cut(s)	995
Fsp4HI	GCNGC	8 cut(s)	36, 351, 477, 546, 1042, 1065, 1106, 1127
FspBI	CTAG	3 cut(s)	1260, 1319, 1734
GlaI	GCGC	7 cut(s)	39, 885, 1045, 1068, 1125, 1264, 1294
GluI	GCNGC	8 cut(s)	36, 351, 477, 546, 1042, 1065, 1106, 1127
HaeII	RGCGCY	2 cut(s)	887, 1266
HaeIII	GGCC	6 cut(s)	46, 993, 1105, 1184, 1208, 1742
HgaI	GACGC	7 cut(s)	170, 365, 434, 503, 632, 640, 1047
HhaI	GCGC	7 cut(s)	40, 886, 1046, 1069, 1126, 1265, 1295
Hin1I	GRCGYC	3 cut(s)	506, 643, 1058
Hin1II	CATG	4 cut(s)	1039, 1747, 1759, 1822
Hin6I	GCGC	7 cut(s)	38, 884, 1044, 1067, 1124, 1263, 1293
HinP1I	GCGC	7 cut(s)	38, 884, 1044, 1067, 1124, 1263, 1293
HincII	GTYRAC	4 cut(s)	327, 905, 945, 1829
HindII	GTYRAC	4 cut(s)	327, 905, 945, 1829
HindIII	AAGCTT	1 cut(s)	1144
HinfI	GANTC	9 cut(s)	5, 203, 341, 616, 941, 1220, 1225, 1553, 1639
HphI	GGTGA	8 cut(s)	973, 1250, 1280, 1309, 1345, 1351, 1530, 1562
Hpy166II	GTNNAC	8 cut(s)	327, 441, 510, 647, 788, 905, 945, 1829
Hpy188I	TCNGA	9 cut(s)	208, 277, 346, 484, 621, 690, 759, 831, 1219
Hpy8I	GTNNAC	8 cut(s)	327, 441, 510, 647, 788, 905, 945, 1829
Hpy99I	CGWCG	3 cut(s)	986, 1063, 1894
HpyAV	CCTTC	5 cut(s)	1126, 1330, 1394, 1447, 1807
HpyCH4III	ACNGT	3 cut(s)	393, 1333, 1791
HpyCH4IV	ACGT	1 cut(s)	506
HpyCH4V	TGCA	8 cut(s)	221, 290, 353, 703, 976, 1574, 1648, 1807
HpyF10VI	GCNNNNNNNGC	7 cut(s)	356, 425, 485, 494, 631, 640, 1064
HpyF3I	CTNAG	4 cut(s)	501, 1251, 1281, 1310
HpySE526I	ACGT	1 cut(s)	506
Hsp92I	GRCGYC	3 cut(s)	506, 643, 1058
Hsp92II	CATG	4 cut(s)	1039, 1747, 1759, 1822
HspAI	GCGC	7 cut(s)	38, 884, 1044, 1067, 1124, 1263, 1293
Kpn2I	TCCGGA	1 cut(s)	1174
KpnI	GGTACC	1 cut(s)	824
Kzo9I	GATC	4 cut(s)	1032, 1530, 1564, 1777
LmnI	GCTCC	3 cut(s)	748, 1200, 1827
Lsp1109I	GCAGC	3 cut(s)	337, 1053, 1138
MaeI	CTAG	3 cut(s)	1260, 1319, 1734
MaeII	ACGT	1 cut(s)	506
MaeIII	GTNAC	4 cut(s)	1238, 1268, 1297, 1550
MalI	GATC	4 cut(s)	1034, 1532, 1566, 1779
MboI	GATC	4 cut(s)	1032, 1530, 1564, 1777
MfeI	CAATTG	1 cut(s)	1808
MhlI	GDGCHC	3 cut(s)	79, 98, 995
MlsI	TGGCCA	1 cut(s)	1208
MluCI	AATT	8 cut(s)	684, 1534, 1618, 1623, 1684, 1802, 1808, 1875
MluNI	TGGCCA	1 cut(s)	1208
MlyI	GAGTC	4 cut(s)	14, 950, 1234, 1547
MmeI	TCCRAC	1 cut(s)	7
Mox20I	TGGCCA	1 cut(s)	1208
Mph1103I	ATGCAT	3 cut(s)	223, 292, 705
MroI	TCCGGA	1 cut(s)	1174
MscI	TGGCCA	1 cut(s)	1208
MseI	TTAA	1 cut(s)	1622
Msp20I	TGGCCA	1 cut(s)	1208
MspR9I	CCNGG	5 cut(s)	48, 72, 116, 117, 1477
MunI	CAATTG	1 cut(s)	1808
MvaI	CCWGG	1 cut(s)	1477
MvnI	CGCG	3 cut(s)	1046, 1108, 1295
MwoI	GCNNNNNNNGC	7 cut(s)	356, 425, 485, 494, 631, 640, 1064
NciI	CCSGG	4 cut(s)	48, 72, 116, 117
NdeI	CATATG	2 cut(s)	1644, 1866
NdeII	GATC	4 cut(s)	1032, 1530, 1564, 1777
NlaIII	CATG	4 cut(s)	1039, 1747, 1759, 1822
NmeAIII	GCCGAG	2 cut(s)	1100, 1210
NmuCI	GTSAC	4 cut(s)	1238, 1268, 1297, 1550
NsiI	ATGCAT	3 cut(s)	223, 292, 705
NspV	TTCGAA	1 cut(s)	1521
PaeR7I	CTCGAG	1 cut(s)	998
PagI	TCATGA	1 cut(s)	1035
PcsI	WCGNNNNNNNCGW	3 cut(s)	380, 389, 950
PfeI	GAWTC	5 cut(s)	203, 341, 616, 1220, 1639
PflFI	GACNNNGTC	2 cut(s)	61, 949
PflMI	CCANNNNNTGG	2 cut(s)	1547, 1699
PinAI	ACCGGT	2 cut(s)	823, 1235
PkrI	GCNGC	8 cut(s)	37, 352, 478, 547, 1043, 1066, 1107, 1128
Ple19I	CGATCG	1 cut(s)	1780
PleI	GAGTC	4 cut(s)	13, 949, 1233, 1547
PpsI	GAGTC	4 cut(s)	13, 949, 1233, 1547
PsiI	TTATAA	1 cut(s)	1617
Psp6I	CCWGG	1 cut(s)	1475
PspGI	CCWGG	1 cut(s)	1475
PspOMI	GGGCCC	1 cut(s)	991
PspPI	GGNCC	6 cut(s)	18, 68, 112, 991, 992, 1103
PstI	CTGCAG	1 cut(s)	355
PsyI	GACNNNGTC	2 cut(s)	61, 949
PvuI	CGATCG	1 cut(s)	1780
RsaI	GTAC	1 cut(s)	822
RsaNI	GTAC	1 cut(s)	821
SalI	GTCGAC	1 cut(s)	943
SaqAI	TTAA	1 cut(s)	1622
SatI	GCNGC	8 cut(s)	36, 351, 477, 546, 1042, 1065, 1106, 1127
Sau3AI	GATC	4 cut(s)	1032, 1530, 1564, 1777
Sau96I	GGNCC	6 cut(s)	18, 68, 112, 991, 992, 1103
SchI	GAGTC	4 cut(s)	14, 950, 1234, 1547
ScrFI	CCNGG	5 cut(s)	48, 72, 116, 117, 1477
SduI	GDGCHC	3 cut(s)	79, 98, 995
SfcI	CTRYAG	1 cut(s)	351
Sfr274I	CTCGAG	1 cut(s)	998
SfuI	TTCGAA	1 cut(s)	1521
SgrAI	CRCCGGYG	1 cut(s)	1265
SinI	GGWCC	3 cut(s)	18, 68, 112
SlaI	CTCGAG	1 cut(s)	998
SmaI	CCCGGG	1 cut(s)	117
SmlI	CTYRAG	1 cut(s)	998
SmoI	CTYRAG	1 cut(s)	998
Sse9I	AATT	8 cut(s)	684, 1534, 1618, 1623, 1684, 1802, 1808, 1875
SspI	AATATT	1 cut(s)	1855
SspMI	CTAG	3 cut(s)	1260, 1319, 1734
StyD4I	CCNGG	5 cut(s)	46, 70, 114, 115, 1475
StyI	CCWWGG	1 cut(s)	638
TaaI	ACNGT	3 cut(s)	393, 1333, 1791
TaiI	ACGT	1 cut(s)	509
TaqII	GACCGA	1 cut(s)	1106
TasI	AATT	8 cut(s)	684, 1534, 1618, 1623, 1684, 1802, 1808, 1875
TauI	GCSGC	5 cut(s)	38, 479, 548, 1067, 1108
TfiI	GAWTC	5 cut(s)	203, 341, 616, 1220, 1639
Tru1I	TTAA	1 cut(s)	1622
Tru9I	TTAA	1 cut(s)	1622
TseFI	GTSAC	4 cut(s)	1238, 1268, 1297, 1550
TseI	GCWGC	3 cut(s)	350, 1041, 1126
Tsp45I	GTSAC	4 cut(s)	1238, 1268, 1297, 1550
TspDTI	ATGAA	6 cut(s)	297, 710, 779, 851, 1605, 1614
TspGWI	ACGGA	4 cut(s)	91, 1187, 1711, 1814
TspMI	CCCGGG	1 cut(s)	115
Tth111I	GACNNNGTC	2 cut(s)	61, 949
Van91I	CCANNNNNTGG	2 cut(s)	1547, 1699
VpaK11BI	GGWCC	3 cut(s)	18, 68, 112
XapI	RAATTY	2 cut(s)	1684, 1875
XbaI	TCTAGA	1 cut(s)	1733
XhoI	CTCGAG	1 cut(s)	998
XmaI	CCCGGG	1 cut(s)	115
XmiI	GTMKAC	4 cut(s)	440, 509, 646, 944
XspI	CTAG	3 cut(s)	1260, 1319, 1734
ZraI	GACGTC	1 cut(s)	507
Zsp2I	ATGCAT	3 cut(s)	223, 292, 705

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.