Basic Information

Type: gene

Biological Identity

Species

rosa_roxburghii

Chromosome

GWHEROQ00000004

Orthogroup ID

OG0000314

Physical Location & Seq

Genomic Coordinates Reverse (-)

48953069 .. 48954718

Gene Structure 1650 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rroxscaffold_4G00320310.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1095 bp

ATGACGACATTACAACAAAAGAGGCTTTTGTTGAGAAGCCTATCCCGGAGGGAGCAACTTTCGATGAGACGATCGCGATCCTTAGGGAGAATATCGAGAACCATAGCAAGAAGCTGGACGCGGATCTCGCCGAGAAACTGCAAAGTCGAAAGGCTCCTCCGCGAGTTTGAGCAGCGTATGACTCTCTATGCGGAAAATACCAAGCAACAAAAACAAGTCATGGAGGCTAACGCGAACCAGAACAAGCATACCTCATTGGAGTTCGCGACCTTGCGCAAGGAAGGTCCCAACTTGACTACTCAAGTCGGTTCACGACAAGGCGAATTGGAAAGCCAAAAATCTTCGCGCCAAGAGGTTATTTCGAGGCGACCCAATTGTCGTTTACCGGGAAGAAAAGCCTCCGAAGAAACTTGTCAAGAAGGAGATGGCCTTGCTACTGGACATCGTCATGACCAAAGAGGTAATCAAAACCATGATCAACTTAATTGTCAATTAAGTTGCTATCTACCTACTGGGCTTCATCATAATCAAAAGCATGGTCAAAGTCATGGTCCAATCAGTCATCAACCAAGCCATTATATGGCTATTGGACGTCAACATGGTCAAAAAGTTGACCAATGCCATAATCAACTTAGTTATGAATTAAGTTGTGGTCTTGAAAAGCCAATCTGTGGCTTTATTAATCAATTCTACTTCAATTTCTTCATCAGTGCTTCAATGCCAAGCGGTGGCTTTGATATATGTGGAGGATACATCTGCAACCCACCTTGCAAGAATGGCCGAATAATTATTCTAGTGGCCAATTTGTACTTCGCGACTCAGTTCAAATTCCTTGAACAAGTGGTTAAATATAATAGCCAATCTGTGGCTTATTCTCAAGACACCATGTTCTATGACATGGTAGTTGGCGACAAAGCCGATCTTGGGACATTGTCATCTCCAAAATTGCAATTGAAGAACATGCTTCGTCAACCAACAAAGATACTTGGGGGCAATACTACTTCTTCTACGAGCCAAATTTCTTCCAAGTTTTCGACGCGAAGTATCTTTGTTATTTTCTTACAAGCTCCCGCAAGAGGGATTTTCATGCCATAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003676 GO:0003723 GO:0003824 GO:0004652 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005829 GO:0006139 GO:0006276 GO:0006378 GO:0006396 GO:0006397 GO:0006725 GO:0006807 GO:0008150 GO:0008152 GO:0009451 GO:0009987 GO:0010467 GO:0016070 GO:0016071 GO:0016740 GO:0016772 GO:0016779 GO:0031123 GO:0031124 GO:0034641 GO:0043170 GO:0043412 GO:0043631 GO:0044237 GO:0044238 GO:0044424 GO:0044444 GO:0044464 GO:0046483 GO:0070566 GO:0071704 GO:0090304 GO:0097159 GO:1901360 GO:1901363

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

PolyA_pol PolyA_pol_RNAbd

Protein Analysis

364

Amino Acids

41.33

Weight (kDa)

9.81

Isoelectric Point (pI)

56.63

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0000314)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_1g02272 FvH4_1g22661 FvH4_2g10242 FvH4_2g34051 FvH4_3g19221 FvH4_3g29651 FvH4_3g30891 FvH4_4g11061 FvH4_5g09250 FvH4_5g15302 FvH4_5g15303 FvH4_5g15304 FvH4_5g28521 FvH4_6g23591 FvH4_7g05710 FvH4_7g19520
pyrus_communis	pycom07g06330
rosa_chinensis	RchiOBHm_Chr5g0027301 RchiOBHm_Chr6g0251451 RchiOBHm_Chr6g0274861
rosa_laevigata	RLG00000007850
rosa_multiflora	Rmu_co8230721.1_g000001 Rmu_sc0000271.1_g000027 Rmu_sc0000303.1_g000024 Rmu_sc0000368.1_g000024 Rmu_sc0000621.1_g000037 Rmu_sc0000693.1_g000081 Rmu_sc0001229.1_g000006 Rmu_sc0001373.1_g000003 Rmu_sc0001459.1_g000001 Rmu_sc0001744.1_g000002 Rmu_sc0001909.1_g000002 Rmu_sc0002053.1_g000012 Rmu_sc0002060.1_g000015 Rmu_sc0002119.1_g000036 Rmu_sc0002177.1_g000007 Rmu_sc0002822.1_g000024 Rmu_sc0002965.1_g000015 Rmu_sc0003363.1_g000051 Rmu_sc0003500.1_g000013 Rmu_sc0004191.1_g000020 Rmu_sc0004904.1_g000032 Rmu_sc0005325.1_g000008 Rmu_sc0005947.1_g000040 Rmu_sc0006475.1_g000001 Rmu_sc0006522.1_g000019 Rmu_sc0007102.1_g000005 Rmu_sc0007810.1_g000003 Rmu_sc0008339.1_g000025 Rmu_sc0008698.1_g000004 Rmu_sc0009313.1_g000006 Rmu_sc0009850.1_g000006 Rmu_sc0010598.1_g000003 Rmu_sc0011162.1_g000002 Rmu_sc0011824.1_g000004 Rmu_sc0011900.1_g000010 Rmu_sc0012291.1_g000006 Rmu_sc0012619.1_g000003 Rmu_sc0014679.1_g000001 Rmu_sc0019053.1_g000001 Rmu_sc0021462.1_g000003 Rmu_sc0024172.1_g000001 Rmu_sc0024173.1_g000001 Rmu_ssc0000052.1_g000016 Rmu_ssc0000392.1_g000010 Rmu_ssc0000421.1_g000062 Rmu_ssc0000479.1_g000006
rosa_roxburghii	Rroxscaffold_153G00436600 Rroxscaffold_1G00008580 Rroxscaffold_1G00016770 Rroxscaffold_1G00029550 Rroxscaffold_1G00036450 Rroxscaffold_1G00040410 Rroxscaffold_1G00047110 Rroxscaffold_1G00060570 Rroxscaffold_2G00081500 Rroxscaffold_2G00081510 Rroxscaffold_2G00086080 Rroxscaffold_2G00099620 Rroxscaffold_2G00099630 Rroxscaffold_2G00099640 Rroxscaffold_2G00109170 Rroxscaffold_2G00127750 Rroxscaffold_2G00128590 Rroxscaffold_2G00130780 Rroxscaffold_2G00131040 Rroxscaffold_2G00143160 Rroxscaffold_3G00229280 Rroxscaffold_3G00229290 Rroxscaffold_3G00229970 Rroxscaffold_3G00242860 Rroxscaffold_3G00242890 Rroxscaffold_3G00242900 Rroxscaffold_3G00248200 Rroxscaffold_4G00284550 Rroxscaffold_4G00288780 Rroxscaffold_4G00298620 Rroxscaffold_4G00298630 Rroxscaffold_4G00312420 Rroxscaffold_4G00320310 Rroxscaffold_4G00322220 Rroxscaffold_4G00323600 Rroxscaffold_4G00331830 Rroxscaffold_4G00332010 Rroxscaffold_4G00332020 Rroxscaffold_5G00344470 Rroxscaffold_5G00345310 Rroxscaffold_5G00356120 Rroxscaffold_5G00368700 Rroxscaffold_5G00379820 Rroxscaffold_5G00382480 Rroxscaffold_6G00395080 Rroxscaffold_6G00405520 Rroxscaffold_6G00428210 Rroxscaffold_7G00193460
rosa_samantha	Rh7CG413200 Rh7DG284900

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AasI	GACNNNNNNGTC	1 cut(s)	375
AatII	GACGTC	1 cut(s)	595
Acc16I	TGCGCA	1 cut(s)	275
AccB7I	CCANNNNNTGG	4 cut(s)	580, 671, 728, 865
AccII	CGCG	8 cut(s)	76, 121, 162, 233, 266, 346, 815, 1039
AciI	CCGC	5 cut(s)	121, 160, 191, 726, 1071
AclWI	GGATC	2 cut(s)	72, 131
AcoI	YGGCCR	2 cut(s)	778, 798
AcsI	RAATTY	2 cut(s)	827, 1017
AcyI	GRCGYC	1 cut(s)	592
AfaI	GTAC	1 cut(s)	809
AfiI	CCNNNNNNNGG	7 cut(s)	580, 671, 728, 865, 924, 1076, 1077
AgsI	TTSAA	6 cut(s)	659, 697, 717, 826, 836, 955
AjuI	GAANNNNNNNTTGG	2 cut(s)	794, 826
AluBI	AGCT	2 cut(s)	114, 1067
AluI	AGCT	2 cut(s)	114, 1067
Alw26I	GTCTC	1 cut(s)	61
AlwI	GGATC	2 cut(s)	72, 131
AoxI	GGCC	3 cut(s)	427, 778, 798
ApeKI	GCWGC	1 cut(s)	172
ApoI	RAATTY	2 cut(s)	827, 1017
ArsI	GACNNNNNNTTYG	4 cut(s)	523, 535, 555, 567
AseI	ATTAAT	1 cut(s)	681
AspLEI	GCGC	2 cut(s)	276, 348
AspS9I	GGNCC	2 cut(s)	284, 551
AsuC2I	CCSGG	2 cut(s)	46, 387
AvaII	GGWCC	2 cut(s)	284, 551
AxyI	CCTNAGG	1 cut(s)	82
BalI	TGGCCA	1 cut(s)	800
BbvI	GCAGC	1 cut(s)	184
BccI	CCATC	1 cut(s)	419
BciVI	GTATCC	1 cut(s)	743
BclI	TGATCA	1 cut(s)	475
BcnI	CCSGG	2 cut(s)	46, 387
BcoDI	GTCTC	1 cut(s)	61
BfaI	CTAG	1 cut(s)	794
BfuI	GTATCC	1 cut(s)	743
BisI	GCNGC	1 cut(s)	173
BlsI	GCNGC	1 cut(s)	174
Bme1390I	CCNGG	2 cut(s)	46, 387
Bme18I	GGWCC	2 cut(s)	284, 551
BmgT120I	GGNCC	2 cut(s)	284, 551
BmiI	GGNNCC	2 cut(s)	155, 286
BmrFI	CCNGG	2 cut(s)	46, 387
BmrI	ACTGGG	1 cut(s)	522
BmuI	ACTGGG	1 cut(s)	522
BpuEI	CTTGAG	2 cut(s)	285, 861
BpuMI	CCSGG	2 cut(s)	46, 387
BsaBI	GATNNNNATC	1 cut(s)	76
BsaHI	GRCGYC	1 cut(s)	592
Bsc4I	CCNNNNNNNGG	7 cut(s)	580, 671, 728, 865, 924, 1076, 1077
Bse1I	ACTGG	2 cut(s)	442, 517
Bse21I	CCTNAGG	1 cut(s)	82
Bse8I	GATNNNNATC	1 cut(s)	76
BseJI	GATNNNNATC	1 cut(s)	76
BseLI	CCNNNNNNNGG	7 cut(s)	580, 671, 728, 865, 924, 1076, 1077
BseMII	CTCAG	1 cut(s)	833
BseNI	ACTGG	2 cut(s)	442, 517
BseRI	GAGGAG	1 cut(s)	146
BseXI	GCAGC	1 cut(s)	184
Bsh1236I	CGCG	8 cut(s)	76, 121, 162, 233, 266, 346, 815, 1039
Bsh1285I	CGRYCG	1 cut(s)	74
BshFI	GGCC	3 cut(s)	429, 780, 800
BsiEI	CGRYCG	1 cut(s)	74
BsiSI	CCGG	2 cut(s)	46, 386
BslFI	GGGAC	2 cut(s)	270, 940
BslI	CCNNNNNNNGG	7 cut(s)	580, 671, 728, 865, 924, 1076, 1077
BsmAI	GTCTC	1 cut(s)	61
BsmBI	CGTCTC	1 cut(s)	61
BsmFI	GGGAC	2 cut(s)	270, 940
BsnI	GGCC	3 cut(s)	429, 780, 800
Bsp143I	GATC	5 cut(s)	71, 77, 123, 475, 919
Bsp68I	TCGCGA	3 cut(s)	76, 266, 815
BspACI	CCGC	5 cut(s)	121, 160, 191, 726, 1071
BspANI	GGCC	3 cut(s)	429, 780, 800
BspCNI	CTCAG	1 cut(s)	832
BspFNI	CGCG	8 cut(s)	76, 121, 162, 233, 266, 346, 815, 1039
BspHI	TCATGA	1 cut(s)	448
BspLI	GGNNCC	2 cut(s)	155, 286
BspPI	GGATC	2 cut(s)	72, 131
BsrI	ACTGG	2 cut(s)	442, 517
BssMI	GATC	5 cut(s)	71, 77, 123, 475, 919
BssNI	GRCGYC	1 cut(s)	592
BstACI	GRCGYC	1 cut(s)	592
BstDEI	CTNAG	3 cut(s)	82, 632, 819
BstFNI	CGCG	8 cut(s)	76, 121, 162, 233, 266, 346, 815, 1039
BstHHI	GCGC	2 cut(s)	276, 348
BstKTI	GATC	5 cut(s)	74, 80, 126, 478, 922
BstMAI	GTCTC	1 cut(s)	61
BstMBI	GATC	5 cut(s)	71, 77, 123, 475, 919
BstMCI	CGRYCG	1 cut(s)	74
BstMWI	GCNNNNNNNGC	2 cut(s)	127, 777
BstNSI	RCATGY	1 cut(s)	964
BstSCI	CCNGG	2 cut(s)	44, 385
BstUI	CGCG	8 cut(s)	76, 121, 162, 233, 266, 346, 815, 1039
BstV1I	GCAGC	1 cut(s)	184
BstX2I	RGATCY	1 cut(s)	123
BstYI	RGATCY	1 cut(s)	123
Bsu36I	CCTNAGG	1 cut(s)	82
BsuI	GTATCC	1 cut(s)	743
BsuRI	GGCC	3 cut(s)	429, 780, 800
BtsIMutI	CAGTG	1 cut(s)	715
BtuMI	TCGCGA	3 cut(s)	76, 266, 815
CciI	TCATGA	1 cut(s)	448
CfoI	GCGC	2 cut(s)	276, 348
Cfr13I	GGNCC	2 cut(s)	284, 551
CseI	GACGC	2 cut(s)	127, 1045
Csp6I	GTAC	1 cut(s)	808
CviQI	GTAC	1 cut(s)	808
DdeI	CTNAG	3 cut(s)	82, 632, 819
DpnI	GATC	5 cut(s)	73, 79, 125, 477, 921
DpnII	GATC	5 cut(s)	71, 77, 123, 475, 919
DrdI	GACNNNNNNGTC	1 cut(s)	375
DseDI	GACNNNNNNGTC	1 cut(s)	375
EaeI	YGGCCR	2 cut(s)	778, 798
Eco47I	GGWCC	2 cut(s)	284, 551
Eco81I	CCTNAGG	1 cut(s)	82
EcoO109I	RGGNCCY	1 cut(s)	284
Esp3I	CGTCTC	1 cut(s)	61
FalI	AAGNNNNNCTT	2 cut(s)	906, 938
FaqI	GGGAC	2 cut(s)	270, 940
FauI	CCCGC	1 cut(s)	1078
FbaI	TGATCA	1 cut(s)	475
Fnu4HI	GCNGC	1 cut(s)	173
Fsp4HI	GCNGC	1 cut(s)	173
FspBI	CTAG	1 cut(s)	794
FspI	TGCGCA	1 cut(s)	275
GlaI	GCGC	2 cut(s)	275, 347
GluI	GCNGC	1 cut(s)	173
HaeIII	GGCC	3 cut(s)	429, 780, 800
HapII	CCGG	2 cut(s)	46, 386
HgaI	GACGC	2 cut(s)	127, 1045
HhaI	GCGC	2 cut(s)	276, 348
Hin1I	GRCGYC	1 cut(s)	592
Hin6I	GCGC	2 cut(s)	274, 346
HinP1I	GCGC	2 cut(s)	274, 346
HincII	GTYRAC	3 cut(s)	596, 613, 971
HindII	GTYRAC	3 cut(s)	596, 613, 971
HinfI	GANTC	2 cut(s)	181, 817
HpaII	CCGG	2 cut(s)	46, 386
Hpy166II	GTNNAC	5 cut(s)	311, 383, 596, 613, 971
Hpy188I	TCNGA	1 cut(s)	403
Hpy188III	TCNNGA	9 cut(s)	75, 96, 265, 312, 416, 449, 656, 814, 878
Hpy8I	GTNNAC	5 cut(s)	311, 383, 596, 613, 971
Hpy99I	CGWCG	1 cut(s)	1039
HpyAV	CCTTC	2 cut(s)	275, 413
HpyCH4IV	ACGT	1 cut(s)	592
HpyCH4V	TGCA	4 cut(s)	141, 759, 771, 949
HpyF10VI	GCNNNNNNNGC	2 cut(s)	127, 777
HpyF3I	CTNAG	3 cut(s)	82, 632, 819
HpySE526I	ACGT	1 cut(s)	592
Hsp92I	GRCGYC	1 cut(s)	592
HspAI	GCGC	2 cut(s)	274, 346
Ksp22I	TGATCA	1 cut(s)	475
Kzo9I	GATC	5 cut(s)	71, 77, 123, 475, 919
LmnI	GCTCC	3 cut(s)	52, 159, 1072
LpnPI	CCDG	6 cut(s)	59, 100, 251, 399, 423, 498
Lsp1109I	GCAGC	1 cut(s)	184
MaeI	CTAG	1 cut(s)	794
MaeII	ACGT	1 cut(s)	592
MalI	GATC	5 cut(s)	73, 79, 125, 477, 921
MboI	GATC	5 cut(s)	71, 77, 123, 475, 919
MboII	GAAGA	7 cut(s)	333, 402, 416, 694, 967, 996, 1014
MfeI	CAATTG	2 cut(s)	373, 950
MflI	RGATCY	1 cut(s)	123
MlsI	TGGCCA	1 cut(s)	800
MluNI	TGGCCA	1 cut(s)	800
MlyI	GAGTC	2 cut(s)	175, 811
Mox20I	TGGCCA	1 cut(s)	800
MscI	TGGCCA	1 cut(s)	800
MseI	TTAA	5 cut(s)	483, 494, 644, 681, 846
MslI	CAYNNNNRTG	1 cut(s)	447
Msp20I	TGGCCA	1 cut(s)	800
MspI	CCGG	2 cut(s)	46, 386
MspR9I	CCNGG	2 cut(s)	46, 387
MunI	CAATTG	2 cut(s)	373, 950
MvnI	CGCG	8 cut(s)	76, 121, 162, 233, 266, 346, 815, 1039
MwoI	GCNNNNNNNGC	2 cut(s)	127, 777
NciI	CCSGG	2 cut(s)	46, 387
NdeII	GATC	5 cut(s)	71, 77, 123, 475, 919
NlaIV	GGNNCC	2 cut(s)	155, 286
NmeAIII	GCCGAG	1 cut(s)	156
NruI	TCGCGA	3 cut(s)	76, 266, 815
NsbI	TGCGCA	1 cut(s)	275
NspI	RCATGY	1 cut(s)	964
PagI	TCATGA	1 cut(s)	448
PflFI	GACNNNGTC	2 cut(s)	444, 931
PflMI	CCANNNNNTGG	4 cut(s)	580, 671, 728, 865
PfoI	TCCNGGA	1 cut(s)	44
PkrI	GCNGC	1 cut(s)	174
Ple19I	CGATCG	1 cut(s)	74
PleI	GAGTC	2 cut(s)	175, 811
PpsI	GAGTC	2 cut(s)	175, 811
PpuMI	RGGWCCY	1 cut(s)	284
PshBI	ATTAAT	1 cut(s)	681
Psp5II	RGGWCCY	1 cut(s)	284
PspN4I	GGNNCC	2 cut(s)	155, 286
PspPI	GGNCC	2 cut(s)	284, 551
PspPPI	RGGWCCY	1 cut(s)	284
PsuI	RGATCY	1 cut(s)	123
PsyI	GACNNNGTC	2 cut(s)	444, 931
PvuI	CGATCG	1 cut(s)	74
RruI	TCGCGA	3 cut(s)	76, 266, 815
RsaI	GTAC	1 cut(s)	809
RsaNI	GTAC	1 cut(s)	808
RseI	CAYNNNNRTG	1 cut(s)	447
SaqAI	TTAA	5 cut(s)	483, 494, 644, 681, 846
SatI	GCNGC	1 cut(s)	173
Sau3AI	GATC	5 cut(s)	71, 77, 123, 475, 919
Sau96I	GGNCC	2 cut(s)	284, 551
SchI	GAGTC	2 cut(s)	175, 811
ScrFI	CCNGG	2 cut(s)	46, 387
SinI	GGWCC	2 cut(s)	284, 551
SmiMI	CAYNNNNRTG	1 cut(s)	447
SmlI	CTYRAG	2 cut(s)	300, 876
SmoI	CTYRAG	2 cut(s)	300, 876
SsiI	CCGC	5 cut(s)	121, 160, 191, 726, 1071
SspMI	CTAG	1 cut(s)	794
StyD4I	CCNGG	2 cut(s)	44, 385
TaiI	ACGT	1 cut(s)	595
TaqI	TCGA	5 cut(s)	62, 95, 147, 362, 1034
TatI	WGTACW	1 cut(s)	807
Tru1I	TTAA	5 cut(s)	483, 494, 644, 681, 846
Tru9I	TTAA	5 cut(s)	483, 494, 644, 681, 846
TscAI	CASTG	1 cut(s)	715
TseI	GCWGC	1 cut(s)	172
TspDTI	ATGAA	4 cut(s)	509, 654, 694, 1075
TspRI	CASTG	1 cut(s)	715
Tth111I	GACNNNGTC	2 cut(s)	444, 931
Van91I	CCANNNNNTGG	4 cut(s)	580, 671, 728, 865
VpaK11BI	GGWCC	2 cut(s)	284, 551
VspI	ATTAAT	1 cut(s)	681
XapI	RAATTY	2 cut(s)	827, 1017
XceI	RCATGY	1 cut(s)	964
XspI	CTAG	1 cut(s)	794
ZraI	GACGTC	1 cut(s)	593

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.