FvH4_5g15302

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
fragaria_vesca
Fvb5
OG0000314
Physical Location & Seq
Reverse (-)
8662159 .. 8663389
1231 bp
Loading structure...
UTR
Exon/CDS
Intron
FvH4_5g15302.t1

Sequence Viewer

Length: 396 bp
ATGGTTCGCCATCGCCAAGAACTCAAGCTAAGGGCAATTTTGAATCCAGTCAAAGTGAACGTCTACTCAAGGTACATCCCTTCGAGCTACATCTATTCGAGGTACATCCCTTCGAGGTCAGACGATTCCTTTCCAAATACATCCACTCGAGCTACATCTCTTCGAAGACAGTATCTACTCAAGCTCGGGACAGAAGCAATACTTATCCTATATGCATGCGAAGAGGTTGCATGCGAGATGGTTGGCGGGCGAGCTGGACCAAGGGACTCGAGGTTGAATGCGAAGAAGTTTGTATGCGACGGAGTTCGCCTAAGAGATAGATACCAAGGGCCGCGAGCTGATTTGATGTTAATTAAAGGATGGCTCCGTGCATGTCAAGGAGTTTGCATTGGTTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

132

Amino Acids

14.97

Weight (kDa)

9.92

Isoelectric Point (pI)

56.93

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
Loading...
Style Settings
Image
Tree File
Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0000314)

Species Orthologous Gene IDs
fragaria_vesca FvH4_1g02272 FvH4_1g22661 FvH4_2g10242 FvH4_2g34051 FvH4_3g19221 FvH4_3g29651 FvH4_3g30891 FvH4_4g11061 FvH4_5g09250 FvH4_5g15302 FvH4_5g15303 FvH4_5g15304 FvH4_5g28521 FvH4_6g23591 FvH4_7g05710 FvH4_7g19520
pyrus_communis pycom07g06330
rosa_chinensis RchiOBHm_Chr5g0027301 RchiOBHm_Chr6g0251451 RchiOBHm_Chr6g0274861
rosa_laevigata RLG00000007850
rosa_multiflora Rmu_co8230721.1_g000001 Rmu_sc0000271.1_g000027 Rmu_sc0000303.1_g000024 Rmu_sc0000368.1_g000024 Rmu_sc0000621.1_g000037 Rmu_sc0000693.1_g000081 Rmu_sc0001229.1_g000006 Rmu_sc0001373.1_g000003 Rmu_sc0001459.1_g000001 Rmu_sc0001744.1_g000002 Rmu_sc0001909.1_g000002 Rmu_sc0002053.1_g000012 Rmu_sc0002060.1_g000015 Rmu_sc0002119.1_g000036 Rmu_sc0002177.1_g000007 Rmu_sc0002822.1_g000024 Rmu_sc0002965.1_g000015 Rmu_sc0003363.1_g000051 Rmu_sc0003500.1_g000013 Rmu_sc0004191.1_g000020 Rmu_sc0004904.1_g000032 Rmu_sc0005325.1_g000008 Rmu_sc0005947.1_g000040 Rmu_sc0006475.1_g000001 Rmu_sc0006522.1_g000019 Rmu_sc0007102.1_g000005 Rmu_sc0007810.1_g000003 Rmu_sc0008339.1_g000025 Rmu_sc0008698.1_g000004 Rmu_sc0009313.1_g000006 Rmu_sc0009850.1_g000006 Rmu_sc0010598.1_g000003 Rmu_sc0011162.1_g000002 Rmu_sc0011824.1_g000004 Rmu_sc0011900.1_g000010 Rmu_sc0012291.1_g000006 Rmu_sc0012619.1_g000003 Rmu_sc0014679.1_g000001 Rmu_sc0019053.1_g000001 Rmu_sc0021462.1_g000003 Rmu_sc0024172.1_g000001 Rmu_sc0024173.1_g000001 Rmu_ssc0000052.1_g000016 Rmu_ssc0000392.1_g000010 Rmu_ssc0000421.1_g000062 Rmu_ssc0000479.1_g000006
rosa_roxburghii Rroxscaffold_153G00436600 Rroxscaffold_1G00008580 Rroxscaffold_1G00016770 Rroxscaffold_1G00029550 Rroxscaffold_1G00036450 Rroxscaffold_1G00040410 Rroxscaffold_1G00047110 Rroxscaffold_1G00060570 Rroxscaffold_2G00081500 Rroxscaffold_2G00081510 Rroxscaffold_2G00086080 Rroxscaffold_2G00099620 Rroxscaffold_2G00099630 Rroxscaffold_2G00099640 Rroxscaffold_2G00109170 Rroxscaffold_2G00127750 Rroxscaffold_2G00128590 Rroxscaffold_2G00130780 Rroxscaffold_2G00131040 Rroxscaffold_2G00143160 Rroxscaffold_3G00229280 Rroxscaffold_3G00229290 Rroxscaffold_3G00229970 Rroxscaffold_3G00242860 Rroxscaffold_3G00242890 Rroxscaffold_3G00242900 Rroxscaffold_3G00248200 Rroxscaffold_4G00284550 Rroxscaffold_4G00288780 Rroxscaffold_4G00298620 Rroxscaffold_4G00298630 Rroxscaffold_4G00312420 Rroxscaffold_4G00320310 Rroxscaffold_4G00322220 Rroxscaffold_4G00323600 Rroxscaffold_4G00331830 Rroxscaffold_4G00332010 Rroxscaffold_4G00332020 Rroxscaffold_5G00344470 Rroxscaffold_5G00345310 Rroxscaffold_5G00356120 Rroxscaffold_5G00368700 Rroxscaffold_5G00379820 Rroxscaffold_5G00382480 Rroxscaffold_6G00395080 Rroxscaffold_6G00405520 Rroxscaffold_6G00428210 Rroxscaffold_7G00193460
rosa_samantha Rh7CG413200 Rh7DG284900

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccI GTMKAC 1 cut(s) 63
AccII CGCG 1 cut(s) 334
AciI CCGC 2 cut(s) 246, 332
AfaI GTAC 2 cut(s) 74, 104
AgsI TTSAA 2 cut(s) 43, 277
AluBI AGCT 6 cut(s) 28, 87, 152, 184, 254, 338
AluI AGCT 6 cut(s) 28, 87, 152, 184, 254, 338
Ama87I CYCGRG 3 cut(s) 147, 185, 268
AoxI GGCC 1 cut(s) 329
ArsI GACNNNNNNTTYG 2 cut(s) 45, 77
AspS9I GGNCC 2 cut(s) 257, 329
AsuII TTCGAA 1 cut(s) 163
AvaI CYCGRG 3 cut(s) 147, 185, 268
AvaII GGWCC 1 cut(s) 257
BbsI GAAGAC 1 cut(s) 172
BccI CCATC 3 cut(s) 18, 232, 354
BcgI CGANNNNNNTGC 2 cut(s) 209, 243
BisI GCNGC 1 cut(s) 332
BlsI GCNGC 1 cut(s) 333
Bme18I GGWCC 1 cut(s) 257
BmeT110I CYCGRG 3 cut(s) 147, 185, 268
BmgT120I GGNCC 2 cut(s) 257, 329
BmiI GGNNCC 1 cut(s) 365
BpiI GAAGAC 1 cut(s) 172
Bpu10I CCTNAGC 1 cut(s) 29
Bpu14I TTCGAA 1 cut(s) 163
BpuEI CTTGAG 3 cut(s) 8, 52, 164
BsaJI CCNNGG 2 cut(s) 260, 325
Bse1I ACTGG 1 cut(s) 47
BseDI CCNNGG 2 cut(s) 260, 325
BseGI GGATG 4 cut(s) 75, 105, 140, 365
BseNI ACTGG 1 cut(s) 47
Bsh1236I CGCG 1 cut(s) 334
BshFI GGCC 1 cut(s) 331
BsiHKCI CYCGRG 3 cut(s) 147, 185, 268
BslFI GGGAC 2 cut(s) 202, 278
BsmFI GGGAC 2 cut(s) 202, 278
BsmI GAATGC 1 cut(s) 283
BsnI GGCC 1 cut(s) 331
BsoBI CYCGRG 3 cut(s) 147, 185, 268
Bsp119I TTCGAA 1 cut(s) 163
BspACI CCGC 2 cut(s) 246, 332
BspANI GGCC 1 cut(s) 331
BspFNI CGCG 1 cut(s) 334
BspLI GGNNCC 1 cut(s) 365
BspT104I TTCGAA 1 cut(s) 163
BsrI ACTGG 1 cut(s) 47
BssECI CCNNGG 2 cut(s) 260, 325
BssT1I CCWWGG 2 cut(s) 260, 325
Bst4CI ACNGT 1 cut(s) 171
Bst6I CTCTTC 2 cut(s) 165, 216
BstBI TTCGAA 1 cut(s) 163
BstC8I GCNNGC 5 cut(s) 217, 232, 248, 252, 336
BstDEI CTNAG 2 cut(s) 29, 311
BstF5I GGATG 4 cut(s) 75, 105, 140, 365
BstFNI CGCG 1 cut(s) 334
BstNSI RCATGY 3 cut(s) 219, 234, 375
BstUI CGCG 1 cut(s) 334
BstV2I GAAGAC 1 cut(s) 172
BsuRI GGCC 1 cut(s) 331
BtsCI GGATG 4 cut(s) 75, 105, 140, 365
Cac8I GCNNGC 5 cut(s) 217, 232, 248, 252, 336
Cfr13I GGNCC 2 cut(s) 257, 329
Csp6I GTAC 2 cut(s) 73, 103
CviAII CATG 3 cut(s) 216, 231, 372
CviJI RGCY 8 cut(s) 28, 87, 152, 184, 254, 331, 338, 364
CviKI_1 RGCY 8 cut(s) 28, 87, 152, 184, 254, 331, 338, 364
CviQI GTAC 2 cut(s) 73, 103
DdeI CTNAG 2 cut(s) 29, 311
Eam1104I CTCTTC 2 cut(s) 165, 216
EarI CTCTTC 2 cut(s) 165, 216
Eco130I CCWWGG 2 cut(s) 260, 325
Eco47I GGWCC 1 cut(s) 257
Eco88I CYCGRG 3 cut(s) 147, 185, 268
EcoT14I CCWWGG 2 cut(s) 260, 325
EcoT22I ATGCAT 1 cut(s) 217
ErhI CCWWGG 2 cut(s) 260, 325
FaeI CATG 3 cut(s) 219, 234, 375
FaiI YATR 6 cut(s) 211, 213, 217, 232, 295, 373
FalI AAGNNNNNCTT 2 cut(s) 186, 218
FaqI GGGAC 2 cut(s) 202, 278
FatI CATG 3 cut(s) 215, 230, 371
FauI CCCGC 1 cut(s) 239
FblI GTMKAC 1 cut(s) 63
Fnu4HI GCNGC 1 cut(s) 332
FokI GGATG 4 cut(s) 62, 92, 127, 372
Fsp4HI GCNGC 1 cut(s) 332
GluI GCNGC 1 cut(s) 332
HaeIII GGCC 1 cut(s) 331
Hin1II CATG 3 cut(s) 219, 234, 375
HinfI GANTC 3 cut(s) 43, 125, 266
Hpy166II GTNNAC 2 cut(s) 58, 64
Hpy188I TCNGA 1 cut(s) 121
Hpy188III TCNNGA 1 cut(s) 187
Hpy8I GTNNAC 2 cut(s) 58, 64
Hpy99I CGWCG 1 cut(s) 302
HpyAV CCTTC 2 cut(s) 90, 120
HpyCH4III ACNGT 1 cut(s) 171
HpyCH4IV ACGT 1 cut(s) 60
HpyCH4V TGCA 4 cut(s) 215, 230, 371, 387
HpyF3I CTNAG 2 cut(s) 29, 311
HpySE526I ACGT 1 cut(s) 60
Hsp92II CATG 3 cut(s) 219, 234, 375
LmnI GCTCC 1 cut(s) 369
LpnPI CCDG 2 cut(s) 60, 240
MaeII ACGT 1 cut(s) 60
MboII GAAGA 4 cut(s) 152, 177, 233, 295
MluCI AATT 2 cut(s) 36, 351
MlyI GAGTC 1 cut(s) 260
MnlI CCTC 4 cut(s) 93, 108, 217, 264
Mph1103I ATGCAT 1 cut(s) 217
MseI TTAA 3 cut(s) 350, 354, 394
Mva1269I GAATGC 1 cut(s) 283
MvnI CGCG 1 cut(s) 334
NlaIII CATG 3 cut(s) 219, 234, 375
NlaIV GGNNCC 1 cut(s) 365
NsiI ATGCAT 1 cut(s) 217
NspI RCATGY 3 cut(s) 219, 234, 375
NspV TTCGAA 1 cut(s) 163
PacI TTAATTAA 1 cut(s) 354
PaeI GCATGC 2 cut(s) 219, 234
PaeR7I CTCGAG 2 cut(s) 147, 268
PctI GAATGC 1 cut(s) 283
PfeI GAWTC 2 cut(s) 43, 125
PkrI GCNGC 1 cut(s) 333
PleI GAGTC 1 cut(s) 260
PpsI GAGTC 1 cut(s) 260
PspN4I GGNNCC 1 cut(s) 365
PspPI GGNCC 2 cut(s) 257, 329
PspXI VCTCGAGB 2 cut(s) 147, 268
RsaI GTAC 2 cut(s) 74, 104
RsaNI GTAC 2 cut(s) 73, 103
SaqAI TTAA 3 cut(s) 350, 354, 394
SatI GCNGC 1 cut(s) 332
Sau96I GGNCC 2 cut(s) 257, 329
SchI GAGTC 1 cut(s) 260
Sfr274I CTCGAG 2 cut(s) 147, 268
SfuI TTCGAA 1 cut(s) 163
SinI GGWCC 1 cut(s) 257
SlaI CTCGAG 2 cut(s) 147, 268
SmlI CTYRAG 5 cut(s) 23, 67, 147, 179, 268
SmoI CTYRAG 5 cut(s) 23, 67, 147, 179, 268
SphI GCATGC 2 cut(s) 219, 234
Sse9I AATT 2 cut(s) 36, 351
SsiI CCGC 2 cut(s) 246, 332
StyI CCWWGG 2 cut(s) 260, 325
TaaI ACNGT 1 cut(s) 171
TaiI ACGT 1 cut(s) 63
TaqI TCGA 6 cut(s) 83, 98, 113, 148, 163, 269
TasI AATT 2 cut(s) 36, 351
TauI GCSGC 1 cut(s) 334
TfiI GAWTC 2 cut(s) 43, 125
Tru1I TTAA 3 cut(s) 350, 354, 394
Tru9I TTAA 3 cut(s) 350, 354, 394
TspGWI ACGGA 2 cut(s) 315, 356
VpaK11BI GGWCC 1 cut(s) 257
XceI RCATGY 3 cut(s) 219, 234, 375
XhoI CTCGAG 2 cut(s) 147, 268
XmiI GTMKAC 1 cut(s) 63
Zsp2I ATGCAT 1 cut(s) 217
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.